Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sesamum_20indicum_20[refseq_20GCF_5F000512975.1_202014-01-06] 16,236 sequences; 275,059,498 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq14 95.1 1e-14 seq11 89.7 4e-13 >seq14 Length=4882680 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 || || || | ||| | |||| ||||| |||||||| || ||||| |||||||||||| Sbjct 1410737 CCACCACGGAGCCTCAGAACCAAGTGCAGGGTAGACTCTTTCTGAATGTTGTAATCCGCC 1410796 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | || | | ||||||| ||| || || ||| ||||||| |||||||| || || Sbjct 1410797 AAGGTGCGGCCATCCTCCAACTGCTTTCCAGCAAAAATAAGCCTCTGCTGGTCTGGTGGG 1410856 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994 | ||||| || || ||| || || || | | ||| |||||| ||| | Sbjct 1410857 ATCCCCTCCTTATCTTGAATCTTGGCCTTCACATTGTCGATGGTATCGGAGCTCTCAACT 1410916 Query 18995 TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || | ||| ||||| || || || | || |||||||| || ||||| Sbjct 1410917 TCAAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACAAAGATCTGCAT 1410963 >seq11 Length=15446199 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/201 (71%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904 || || ||||| |||||||||||||| || | ||| || | ||||||| |||||| || Sbjct 13445122 GTGGATTCCTTCTGAATATTGTAATCGGCTAGGGTTCTGCCATCCTCCAACTGTTTCCCA 13445063 Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964 || |||| || | |||||||||| || | || || ||||| || || || Sbjct 13445062 GCGAAAATCAGACGCTGCTGATCCGGTGGAATTCCTTCCTTGTCCTGGATCTTGGCCTTA 13445003 Query 18965 ACCTGGCCGACAGTATCGCCAGGCTCCG-TTTCGACGGTAATGGTTTTACCTGTTAAAGT 19023 || | | ||| || || ||| | || ||||| ||||| ||||| || |||| || Sbjct 13445002 ACATTGTCGATGGTGTC-TGAGGTTTCGACTTCGAGAGTAATTGTTTTGCCAGTTAGGGT 13444944 Query 19024 TTTGACAAAAATTTGCATTTT 19044 ||| ||||| |||||||| || Sbjct 13444943 TTTCACAAAGATTTGCATCTT 13444923 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 ||||||| || || ||||||| ||| | || ||||||||||||||||| || || || Sbjct 13253623 CCTCCTCTCAGTCTCAACACCAGGTGGAGAGTCGACTCCTTTTGAATATTATAGTCAGCA 13253682 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | || || ||||||| ||||| ||||| ||| | || | | |||||| ||| || Sbjct 13253683 AGGGTCCTGCCGTCCTCAAGCTGCTTACCAGCAAAGATCAAACGCTGCTGGTCCGGAGGA 13253742 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994 | ||| || ||||| ||| || || || | | | | ||||| | ||| Sbjct 13253743 ATGCCTTCCTTGTCTTGAATCTTTGCCTTCACATTGTCTATTGTATCCGAACTCTCAACC 13253802 Query 18995 TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || | || || || || || || || || |||||||| || ||||| Sbjct 13253803 TCCAAAGTGATTGTCTTCCCAGTCAAGGTCTTGACAAAGATCTGCAT 13253849 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 ||||||| || || ||||||| ||||| || ||||||||||||||||| || || || Sbjct 13253851 CCTCCTCTCAGTCTCAACACCAGGTGCAGTGTCGACTCCTTTTGAATATTATAGTCAGCG 13253910 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | || || | ||||| ||||| ||||| ||| |||| | | ||| ||||| ||| Sbjct 13253911 AGGGTCCTGCCATCCTCGAGCTGCTTACCAGCAAAAATCAAACGCTGTTGATCAGGGGGA 13253970 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAG-GCTCCGT 18993 | || || || || ||||| || || | | | | ||| || | || ||| Sbjct 13253971 ATCCCTTCCTTATCTTGGATTTTGGCCTTAACATTGTCAATAGTGTC-CGAGCTCTCAAC 13254029 Query 18994 TTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || | || ||||| || || || || || || |||||||| ||||| Sbjct 13254030 CTCCAATGTTATGGTCTTCCCCGTCAAGGTCTTAACAAAAATCTGCAT 13254077 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414490765888984