Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sesamum_20indicum_20[refseq_20GCF_5F000512975.1_202014-01-06] 16,236 sequences; 275,059,498 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq11 95.1 9e-15 seq5 95.1 9e-15 >seq11 Length=15446199 Score = 95.1 bits (104), Expect = 9e-15 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 43912 CACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTC 43971 ||||||||| || || || ||||||||||| || ||| || | |||| || Sbjct 13442063 CACCAAATGAAGAGTCGATTCCTTTTGAATATTGTAGTCGGCTAGAGTTCTACCATCCTC 13442004 Query 43972 CAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGA 44031 || ||||||||| || || ||||||| |||||| || | |||| ||||| || || Sbjct 13442003 CAGTTGTTTTCCGGCGAAGATCAACCTTTGCTGATCGGGCGGTATCCCTTCCTTGTCCTG 13441944 Query 44032 AATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTT 44091 |||||| ||||| | | | || |||| |||||| |||| || |||||||| Sbjct 13441943 AATTTTAGCCTTGACGTTGTCTATGGTGTCTGAGCTCTCCACCTCGAGGGTGATTGTTTT 13441884 Query 44092 ACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 ||||| | ||| || ||||| || ||||| Sbjct 13441883 GCCGGTCAGAGTTTTTACAAAGATCTGCAT 13441854 Score = 93.3 bits (102), Expect = 3e-14 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 ||||| ||||| | || |||| ||| || || ||| ||||| || || || || | Sbjct 13253395 CCTCCCCTCAAGCGCAAGACCAGATGGAGAGTTGACTCCTTTTGGATGTTGTAGTC-TGC 13253453 Query 43955 AATTGACGCT--CATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAG 44012 || || | || |||| || | ||||| || ||||| ||||| ||||||||||| ||| Sbjct 13253454 AAGTGTC-CTACCATCCTCAAGCTGTTTACCAGCAAAGATCAATCGTTGCTGGTCTGGAG 13253512 Query 44013 GTACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCA 44072 | | ||||||||| || ||||||| ||||| | | | ||||| | ||| | Sbjct 13253513 GAATACCTTCTTTGTCCTGAATTTTTGCCTTGACGTTGTCTATTGTATCCGAACTCTCAA 13253572 Query 44073 CATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 | || | ||||| || || || || || ||||| ||||| || ||||| Sbjct 13253573 CCTCCAAAGTAATGGTCTTCCCAGTCAAGGTCTTGACAAAGATCTGCAT 13253621 Score = 86.0 bits (94), Expect = 4e-12 Identities = 113/157 (72%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 43965 CATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTT 44024 |||| || | ||| ||||| ||||| ||||| | ||||| || |||| | ||||| | Sbjct 11224989 CATCTTCAAGTTGCTTTCCAGCAAAGATCAATCTCTGCTGATCAGGAGGAATTCCTTCCT 11224930 Query 44025 TATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAA 44084 ||||| ||| || ||||| | ||| |||||| | ||| || |||| || | Sbjct 11224929 TATCTTGAATCTTGGCCTTGACATTGTCAATAGTATCAGAGCTCTCAACCTCGAGAGTGA 11224870 Query 44085 TTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 | ||||| || |||| |||||||||||| || ||||| Sbjct 11224869 TGGTTTTGCCAGTTAGAGTCTTCACAAAGATCTGCAT 11224833 Score = 86.0 bits (94), Expect = 4e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 43930 CTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAA 43989 |||||| || |||||||||||| | | ||| |||| || | || || || ||||| Sbjct 11226164 CTCTTTCTGGATATTATAATCGGCAAGTGTACGGCCATCCTCAAGCTGCTTCCCAGCAAA 11226105 Query 43990 TATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCAT 44049 || | |||||| || || | || | || || || ||| ||| ||| || || | Sbjct 11226104 GATGAGCCGTTGTTGATCTGGTGGAATCCCCTCCTTGTCTTGAATCTTTGCCTTCACATT 11226045 Query 44050 AGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCAC 44109 | ||| ||||||| |||||| || | || |||||||| || || || ||||| || Sbjct 11226044 ATCAATTGTATCTGAACTCTCCACCTCCAGAGTGATTGTTTTTCCAGTCAAGGTCTTAAC 11225985 Query 44110 AAATATTTGCAT 44121 ||| |||||||| Sbjct 11225984 AAAAATTTGCAT 11225973 Score = 84.2 bits (92), Expect = 2e-11 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 |||||||||| ||| ||||||| || || || ||| |||||||||||||| || Sbjct 13253623 CCTCCTCTCAGTCTCAACACCAGGTGGAGAGTCGACTCCTTTTGAATATTATAGTC-AGC 13253681 Query 43955 AATTGAC--GCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAG 44012 || | | || | || || | || || || ||||| ||||| || ||||||||| ||| Sbjct 13253682 AAGGGTCCTGC-CGTCCTCAAGCTGCTTACCAGCAAAGATCAAACGCTGCTGGTCCGGAG 13253740 Query 44013 GTACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCA 44072 | | ||||| || ||| ||| ||| || || | | | ||||| | ||| | Sbjct 13253741 GAATGCCTTCCTTGTCTTGAATCTTTGCCTTCACATTGTCTATTGTATCCGAACTCTCAA 13253800 Query 44073 CATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 | || | || ||||| || || || || ||||| ||||| || ||||| Sbjct 13253801 CCTCCAAAGTGATTGTCTTCCCAGTCAAGGTCTTGACAAAGATCTGCAT 13253849 Score = 84.2 bits (92), Expect = 2e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 43976 TGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATT 44035 || ||||| ||||| ||||| | |||||| || |||| | |||||||||||| ||| Sbjct 13254388 TGCTTTCCAGCAAAAATCAATCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATC 13254447 Query 44036 TTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCG 44095 || ||| || || ||| |||||| | ||| || |||| || || || || ||| Sbjct 13254448 TTAGCTTTTACATTATCAATAGTATCGGAACTCTCGACCTCGAGAGTTATGGTCTTGCCG 13254507 Query 44096 GTTAAAGTCTTCACAAATATTTGCAT 44121 || | ||||| ||||| |||||||| Sbjct 13254508 GTCAGGGTCTTTACAAAGATTTGCAT 13254533 Score = 82.4 bits (90), Expect = 5e-11 Identities = 160/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 ||||| |||| | || || | ||| || || ||| ||||| || |||||||| Sbjct 11225971 CCTCCCCTCAGCCGCAAGACAAGATGAAGAGTTGACTCCTTTTGGATGTTATAATCAGCA 11225912 Query 43955 A-ATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 | | | || |||| || | || || || ||||| ||||| || ||||||||| |||| Sbjct 11225911 AGAGTTCTGC-CATCTTCAAGCTGCTTACCAGCAAAGATCAAGCGCTGCTGGTCCGGAGG 11225853 Query 44014 TACACCTTCTTTATC-TGAAATTTTTTGTTTGACCATAG-CAACAGTATCTGCCGGCTCC 44071 | |||||||||||| |||| | || | | | ||| | ||| ||||| | ||| Sbjct 11225852 AATACCTTCTTTATCCTGAA--TCTTCGCCTTAACATTGTCAATTGTATCCGAACTCTCA 11225795 Query 44072 ACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || || | || || || || || || ||||| || |||||||||||||| Sbjct 11225794 ACCTCTAAAGTGATGGTCTTTCCAGTCAAAGTTTTGACAAATATTTGCAT 11225745 >seq5 Length=18898134 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 || || ||||||| | ||| | ||| || || || || |||||||| ||||| Sbjct 2599105 CCACCCCTCAATCGCAGCACAAGATGGAGGGTCGATTCCTTCTGAATATTGTAATCTGCC 2599164 Query 43955 AATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGT 44014 || | |||| || | |||||| || ||||| ||||| | |||||||| |||| Sbjct 2599165 AAGGTCCTTCCATCCTCAAGTTGTTTGCCAGCAAAGATCAATCTCTGCTGGTCTGGAGGA 2599224 Query 44015 ACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACA 44074 | || || || || ||||||| |||||| | ||| || |||| || || Sbjct 2599225 ATCCCCTCCTTGTCCTGAATTTTTGCTTTGACATTGTCAATTGTGTCTGAGCTTTCAACT 2599284 Query 44075 TCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | ||||| |||||||| || | ||||||||||||||||||||| Sbjct 2599285 TCCAGGGTAATAGTTTTACCAGTAAGAGTCTTCACAAATATTTGCAT 2599331 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354707397938928