Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sesamum_20indicum_20[refseq_20GCF_5F000512975.1_202014-01-06] 16,236 sequences; 275,059,498 total letters Query= NC_005137.2 Length=131160 Score E Sequences producing significant alignments: (Bits) Value seq11 116 3e-21 seq1 84.2 2e-11 seq6 82.4 6e-11 >seq11 Length=15446199 Score = 116 bits (128), Expect = 3e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 || || || | ||||| |||||||| | || || || || || || || |||||| || Sbjct 13442308 CCACCGCGCAGCCTCAGGACCAAATGCAAAGTCGACTCCTTCTGAATATTATAATCGGCC 13442249 Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGC 20101 | ||| | ||||||||| || ||||| || |||| |||||||||||||| || Sbjct 13442248 AGAGTCCTTCCATCTTCCAACTGCTTGCCAGCGAAAATCAGCCTCTGTTGATCTGGTGGA 13442189 Query 20102 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGT-TCCGT 20160 | ||||||||||| ||||||| ||| || | | ||| | ||| || | || Sbjct 13442188 ATTCCTTCTTTGTCCTGAATTTTTGCTTTTACATTGTCAATTGTATC-AGAGCTCTCAAC 13442130 Query 20161 TTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 ||||| |||||| || ||||| |||| ||||| |||||||| ||||| Sbjct 13442129 TTCCAGGGTAATAGTCTTGCCCGTCAGGGTTTTTACAAAAATCTGCAT 13442082 >seq1 Length=18577331 Score = 84.2 bits (92), Expect = 2e-11 Identities = 107/146 (73%), Gaps = 1/146 (1%) Strand=Plus/Minus Query 19971 TTTATCATTTTCC-TCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATG 20029 || |||||| ||| ||| | | ||||| || | || ||||| ||||||||||| || Sbjct 937623 TTGATCATTGTCCCTCCCCTGAGTCTCAAAACAAGGTGAAGTGTTGATTCTTTTTGAATA 937564 Query 20030 TTGTAATCGCCCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGT 20089 |||||||| | | ||| | ||||||||| ||||| || ||| |||| |||||||| Sbjct 937563 TTGTAATCTGCAAGGGTTCTGCCATCTTCCAACTGTTTACCAGCAAAAATGAGCCTCTGC 937504 Query 20090 TGATCGACGGGCACGCCTTCTTTGTC 20115 || || || | ||||||||||| Sbjct 937503 TGGTCAGGAGGTATACCTTCTTTGTC 937478 >seq6 Length=25289714 Score = 82.4 bits (90), Expect = 6e-11 Identities = 84/110 (76%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 20006 TGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCCAATTGT 20065 || ||||| ||||||||||| || |||||||| ||| ||| | ||||||||| ||| Sbjct 18207737 TGAAGTGTGGATTCTTTTTGGATATTGTAATCCGCCAGGGTTCTGCCATCTTCCAACTGT 18207796 Query 20066 TTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTC 20115 || || ||| | || |||||||| || || || | |||||||||||| Sbjct 18207797 TTACCAGCAAATATTAGCCTCTGCTGGTCTGGAGGTATGCCTTCTTTGTC 18207846 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419504173658316