Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sesamum_20indicum_20[refseq_20GCF_5F000512975.1_202014-01-06] 16,236 sequences; 275,059,498 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq13 107 2e-18 >seq13 Length=5050363 Score = 107 bits (118), Expect = 2e-18 Identities = 537/845 (64%), Gaps = 19/845 (2%) Strand=Plus/Minus Query 12860 TTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTT 12919 || |||||||| | ||| || || ||||| ||||||||||| |||| || ||| | Sbjct 3176510 TTCTGATATTCCCCAACCCTCTTCTCAAAGAAGTTTGTTTTCCCTTGCAAACTAATCAAT 3176451 Query 12920 TCCATAAAATCGAAAGGATTTTTCGAACAATAGTATTTTTTACACCCTAATTCTAGTAAC 12979 ||||| |||| || ||||| | | | || | ||| | | || || | ||| Sbjct 3176450 TCCATCCAATCAAATGGATTCTGCACATGGTACAACTTTCCATAGCCCAAAGCATTCAAC 3176391 Query 12980 AATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATTAAT 13039 | ||| ||||| ||||| || |||||||| |||| ||||| | ||||| || | | Sbjct 3176390 AGTCTATCAGCCACAAATTCAATGTACTGGCTCATCAAATCTCCATTCATCCCCACCAGC 3176331 Query 13040 TTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCTTCGATAACTATG 13099 ||||| || || | ||| | | ||||||| ||||| || ||||| Sbjct 3176330 GCGCAAGGCAGCGCATCACACACAAACTCCCTCTCTATATTCACTGCGTCCGCCACTAT- 3176272 Query 13100 TCTCTTATTACGTTCTC-TAATGGAGG---ATTTGATAGATGCTTAAACATCATACATGC 13155 || | | || ||||| | | || |||| | | || || | || || || Sbjct 3176271 --TCCTTTCACTTTCTCCTCACTCAGCTTCATTTTCAACAAACTGTAA-AGCAGGCACGC 3176215 Query 13156 AAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGG 13215 ||||||||| ||||| |||||||||| |||| || || || || || | ||||| Sbjct 3176214 AAAATCACAATGCAAACCTTCATCTCGCGAAATTAATTCATTGGAGAAAGTCAAGCCCGG 3176155 Query 13216 CATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCA-AACGAACCCGaaaaaaaTATTC 13274 ||| | ||| || ||||| | ||||||||| || ||| || ||||| |||||||| | Sbjct 3176154 CATCATCCCGCGCTTTTTCAACCAAAATATGGC-GCAGAAGCTCCCCGAGAAAAATATCC 3176096 Query 13275 CTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTACTATTTTTA-CTCTCTATC 13333 | ||||| ||||| || | |||| ||| || | | ||| | | || ||| Sbjct 3176095 CCTCAACACAAGCAAAGGCGACTAACCGCTCAGCAAAGG----ATTCAGAGCCATCAATC 3176040 Query 13334 CACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTCTATTGCGTTAAAT 13393 || ||||||| || || || | || ||||| | | || |||||| || Sbjct 3176039 CAGCGCATGGCCCACTTGGCCTTCTTTTCCACGCAAGGAACGGTCTCAATTGCGCGGAAG 3175980 Query 13394 AAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAGCTATACATTTCT 13453 | | ||||| || |||| || |||| || | || | || ||||| || Sbjct 3175979 AGGTGGTTTTTCTCGGCCGAGTCTTTGATGTAAGACTCAAGCAGAAGACTGTACATCTCG 3175920 Query 13454 GAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGATACCTGA 13513 |||||||| || || || || |||||||| || || || | ||||| || | ||| Sbjct 3175919 GAATGAATGTTCTCAATGGCAATTTGGAAGCCGTAGAAGGCACGGGCCTCGGAGATCTGG 3175860 Query 13514 ACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAGCAGCaaaa 13573 || || || | | | || | ||||| ||| || || || |||||||| Sbjct 3175859 ACCTCTTTCATGAAGCGTCCAGCGAGATTTTCCAAAACGATACCATCGGAGGCAGCAAAG 3175800 Query 13574 aaaGCAAGTATGTGCTTAATAAAttttttttCGT--TTTCTGACAACTTTAACCAATCTG 13631 || || || | ||| || | || | || |||| ||| ||| ||||| Sbjct 3175799 AAGGCGAGGACGTGTTTGACGAAATGCTTCTCGTCGGAGGTGAGGGCTT--CCCAATGGC 3175742 Query 13632 GAAAATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAGCAACAGCCTTCTTAT 13691 | | || | |||||||| || ||||| ||||||| || ||||| | || || || | Sbjct 3175741 GGAGGTCCTGAGATAAATCAACTTCCTCGGCGGTCCAGAAGGAAGCTTCTGCTTTTTTGT 3175682 Query 13692 ACATC 13696 ||||| Sbjct 3175681 ACATC 3175677 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430897118818872