Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sesamum_20indicum_20[refseq_20GCF_5F000512975.1_202014-01-06] 16,236 sequences; 275,059,498 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq11 102 7e-17 seq6 91.5 1e-13 >seq11 Length=15446199 Score = 102 bits (112), Expect = 7e-17 Identities = 149/211 (71%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTC 48576 ||| |||||||| || ||||||||||| ||||| || || | || | ||||| Sbjct 13442063 CACCAAATGAAGAGTCGATTCCTTTTGAATATTGTAGTCGGCTAGAGTTCTACCATCCTC 13442004 Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636 ||| || || ||| || | || || | |||||||| ||| | | |||||||||| Sbjct 13442003 CAGTTGTTTTCCGGCGAAGATCAACCTTTGCTGATCGGGCGGTATCCCTTCCTTGTCCTG 13441944 Query 48637 AATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTT 48696 |||||| ||||| ||||||| || | |||| ||||| || || ||||| Sbjct 13441943 AATTTTAGCCTTGACGTTGTCTATGGTGTCTGAGCTCTCCACCTCGAGGGTGATTGTTTT 13441884 Query 48697 ACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 ||||| |||||||| ||||| ||||||||| Sbjct 13441883 GCCGGTCAGAGTTTTTACAAAGATCTGCATC 13441853 Score = 100 bits (110), Expect = 2e-16 Identities = 149/206 (72%), Gaps = 4/206 (2%) Strand=Plus/Minus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 ||||| ||| ||||| || ||||||||||| || | || ||||||| |||||| Sbjct 13441372 TGAAGCGTGGATTCCTTCTGGATGTTGTAATCGGCAAGGGTTCTGCCGTCCTCGAGCTGC 13441313 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 || ||| || | || | ||||||||||||| || | | |||||| ||| || ||| Sbjct 13441312 TTTCCGGCGAAGATGAGACGCTGCTGATCCGGAGGAATTCCTTCCTTATCCTGGATCTTC 13441253 Query 48644 TGCTTGATAGACGCTATGGTATCGGTAGACTC-CGTCT-CGACTGTTATGGTTTTACCGG 48701 ||||| | |||||||||| || ||| || || ||| || ||||| || |||| Sbjct 13441252 GCCTTGACGTTATCGATGGTATCGG-AG-CTCTCGACTTCGAGGGTAATGGTCTTGCCGG 13441195 Query 48702 TGAGAGTTTTCACAAAAATCTGCATC 48727 | | ||||||||||| ||||||||| Sbjct 13441194 TTAAGGTTTTCACAAAGATCTGCATC 13441169 Score = 98.7 bits (108), Expect = 8e-16 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 || || ||| |||||| || ||||||||||| ||||| || |||| || |||||| Sbjct 13441828 TGGAGCGTGGACTCCTTCTGGATGTTGTAATCGGCCAAGGTTCTGCCGTCTTCGAGCTGC 13441769 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 || ||| || | || | |||||||||||| ||| | | |||||||| || || Sbjct 13441768 TTCCCGGCGAAGATGAGGCGCTGCTGATCCGGCGGAATTCCCTCCTTGTCTTGGATCTTA 13441709 Query 48644 TGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTG 48703 ||||| ||||||| || | |||| ||| | || || ||||| ||||| Sbjct 13441708 GCCTTGACGTTGTCTATGGTGTCTGAGCTCTCCACCTCCAGCGTGATCGTTTTTCCGGTC 13441649 Query 48704 AGAGTTTTCACAAAAATCTGCATC 48727 ||||||||||| || ||||||||| Sbjct 13441648 AGAGTTTTCACGAAGATCTGCATC 13441625 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 || || ||| |||||| || ||||||||||| ||||| || |||| || |||||| Sbjct 13441600 TGGAGCGTGGACTCCTTCTGGATGTTGTAATCGGCCAAGGTTCTGCCGTCTTCGAGCTGC 13441541 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 || ||| || | || | ||||||||||| ||| | | |||||||| || || Sbjct 13441540 TTCCCGGCGAAGATGAGGCGCTGCTGATCTGGCGGAATTCCCTCCTTGTCTTGGATCTTA 13441481 Query 48644 TGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTG 48703 ||| | |||| || |||| | ||| ||| | || || ||||| || || Sbjct 13441480 GCCTTAACGTTATCTATCGTGTCGGAACTCTCAACCTCCAGCGTGATCGTTTTTCCCGTT 13441421 Query 48704 AGAGTTTTCACAAAAATCTGCATC 48727 || ||||||||||||||||||||| Sbjct 13441420 AGGGTTTTCACAAAAATCTGCATC 13441397 >seq6 Length=25289714 Score = 91.5 bits (100), Expect = 1e-13 Identities = 138/194 (71%), Gaps = 2/194 (1%) Strand=Plus/Minus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCA-ATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGT 48593 |||||| ||||||||||| || || | | || || ||||||| |||||||| ||| || Sbjct 179461 CTCCTTCTGAATGTTGTAGTCGGCGAGAGTG-CGGCCGTCCTCGAGCTGCTTTCCGGCGA 179403 Query 48594 AAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAG 48653 | || | |||||||| ||| || | | |||||||||| || || ||||| Sbjct 179402 AGATGAGGCGCTGCTGGTCCGGAGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGT 179343 Query 48654 ACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCA 48713 | |||||||||| || || ||| | || ||||| ||||| || || ||||| | Sbjct 179342 TGTCAATGGTATCGGAGGATTCGACCTCAAGGGTAATGGTCTTACCCGTTAGGGTTTTGA 179283 Query 48714 CAAAAATCTGCATC 48727 | || ||||||||| Sbjct 179282 CGAAGATCTGCATC 179269 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421167844392236