Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sesamum_20indicum_20[refseq_20GCF_5F000512975.1_202014-01-06] 16,236 sequences; 275,059,498 total letters Query= NC_006882.2 Length=45176 Score E Sequences producing significant alignments: (Bits) Value seq16236 569 6e-158 seq8 282 1e-71 seq6 141 3e-29 seq2 116 1e-21 >seq16236 Length=153324 Score = 569 bits (630), Expect = 6e-158 Identities = 721/986 (73%), Gaps = 4/986 (0%) Strand=Plus/Minus Query 19290 TTTTGTGAGTGGGTCACAAGTACCGAGAACCGCCTTTATGTAGGTTGGTTTGGAGTACTT 19349 || ||| | ||| | || || ||||| ||||| ||||| | || |||||||| || | Sbjct 1393 TTCTGTAACTGGATAACCAGCACCGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 1334 Query 19350 ATGATTCCTTGCTTACTAGCTGCTACTACTTGCTTTATACTCGCCTTTATCGCAGCACCG 19409 ||||| ||| |||| | | || ||| || ||||| | ||||| || || || || Sbjct 1333 ATGATCCCTACCTTATTGACCGCAACTTCTGTATTTATTATTGCCTTCATTGCTGCCCCT 1274 Query 19410 CCTGTAGATATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAAT 19469 || |||||||| ||||| || ||||| || ||||| || || ||| | |||||||||||| Sbjct 1273 CCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTTTACTTTACGGAAACAAT 1214 Query 19470 ATTATTTCTGGAGCAGTAGTTCCAAGCTCCAATGCAATAGGACTGCACTTTTATCCGATC 19529 ||||| || || || | |||| | || || || || |||||||||| || || Sbjct 1213 ATTATCTCAGGTGCCATTATTCCTACTTCTGCAGCTATCGGTTTGCACTTTTACCCAATT 1154 Query 19530 TGGGAAGCCGGCACTTTAGATGAGTGGTTATACAACGGCGGTCCATATCAACTTGTTGTC 19589 |||||||| | | | ||||| |||||||||||||| ||||| ||| |||| |||| Sbjct 1153 TGGGAAGCAGCATCCGTTGATGAATGGTTATACAACGGTGGTCCTTATGAACTAATTGTT 1094 Query 19590 TTCCACTTCTTAATAGGAGTAGCAGCATACGCTGGTAGACAGTGGGAACTATCTTACAGA 19649 | ||||||||| | || ||||| ||| ||| | |||||||||| || | | Sbjct 1093 CTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCGT 1034 Query 19650 TTAGGAATGAGACCATGGATATTCGTAGCATATACAGCACCACTATCAGCAGCTCTTGCT 19709 | || ||| |||| ||||| || |||||| |||| || | |||| ||| ||| Sbjct 1033 CTGGGTATGCGACCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACCGCT 974 Query 19710 GTGTTTCTCGTT-TACCCATTTGGGCAAGGGAGTTTTAGTGATGGTATGCCTCTTGGTAT 19768 || ||||| | | |||||| | || ||||| |||||| ||||||||||||||| || || Sbjct 973 GT-TTTCTTGATCTACCCAATCGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAAT 915 Query 19769 CTCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAACACAATATCCTTATGCATCC 19828 ||||||||||| ||||| ||| | |||||||| || || ||||| ||||||||||| || Sbjct 914 TTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCC 855 Query 19829 GTTCCACATGCTCGGTGTTGCTGGCGTATTCGGTGGATCTCTTTTCTCTGCTATGCACGG 19888 || |||||| | || || ||||| |||||||| || || || ||| ||||||||| || Sbjct 854 ATTTCACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGG 795 Query 19889 AAGTTTGGTTACTTCCTCGATCATCAAGGAAACAACTGAGGATGTATCGCAGAACTATGG 19948 ||||| ||||| | |||| |||||| || || ||| ||| || | || Sbjct 794 TTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGG 735 Query 19949 CTATAAGTTCGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTTTGG 20008 || | ||||| ||||| ||||| || |||||||| || || || || || || ||||| Sbjct 734 TTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCCGCTCATGGTTATTTTGG 675 Query 20009 GAGATTGATATTTCAATATGCTTCTTTCAATAATTCTCGTTCTTTACATTTCTTTCTTGC 20068 ||||||| || ||||||||| |||||| || |||||||| ||||| ||||| || || Sbjct 674 CCGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCGTTACACTTCTTCCTAGC 615 Query 20069 TACTTTCCCCGTGGTTGGCATATGGCTTACCTCCATGGGAATCTGCACTATGGCTTTCAA 20128 | ||| || || || || || ||| | || | | || ||| |||||||||||||||| Sbjct 614 TGCTTGGCCTGTAGTGGGTATCTGGTTCACTGCTTTAGGTATCAGCACTATGGCTTTCAA 555 Query 20129 CCTTAATGGTTTTAACTTTAACCAGTCAGTAGTTGAT-GTCAACGGAAAGATAATCCCAA 20187 ||| || ||||| || || ||||| || ||||||||| ||||| || |||| | Sbjct 554 CCTAAACGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAA-GGCCGTGTAATTAATA 496 Query 20188 CATGGGCTGATGTATTAAATAGAGCTAACCTCGGATTTGAAGTTATGCACGAGCGCAATG 20247 | ||||||||| | | || | |||||||| || | ||||||||||| || || |||| Sbjct 495 CTTGGGCTGATATCATCAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATG 436 Query 20248 CTCATAACTTCCCACTTGATTTAGCT 20273 ||||||||||||| || || ||||| Sbjct 435 CTCATAACTTCCCTCTAGACCTAGCT 410 >seq8 Length=21523998 Score = 282 bits (312), Expect = 1e-71 Identities = 404/563 (72%), Gaps = 11/563 (2%) Strand=Plus/Plus Query 19713 TTTCTCGTT-TACCCATTTGGGCAAGGGAGTTTTAGTGATGGTATGCCTCTTGGTATCTC 19771 ||||| | | |||||| | | ||||| |||||| ||||||||||||||| || || || Sbjct 7119385 TTTCTTGATCTACCCAATCGATCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATTTC 7119444 Query 19772 TGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAACACAATATCCTTATGCATCCGTT 19831 ||||||||| ||||| ||| | |||||||| || || ||||| | ||||||||| || || Sbjct 7119445 TGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACAACCTTATGCACCCATT 7119504 Query 19832 CCACATGCTCGGTGTTGCTGGCGTATTCGGTGGATCTCTTTTCTCTGCTATGCACGGAAG 19891 |||||| | ||||| ||||| |||||||| || || || ||| ||||||||| || Sbjct 7119505 TCACATGTTAGGTGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTC 7119564 Query 19892 TTTGGTTACTTCCTCGATCATCAAGGAAACAACTGAGGATGTATCGCAGAACTATGGCTA 19951 ||||| ||||| | |||| |||||| || || ||| ||| || | || | Sbjct 7119565 CTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAAAGAAGGTCA 7119624 Query 19952 TAAGTTCGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTTTGGGAG 20011 | |||| | | |||| || |||||||| | || || || || || ||||| | Sbjct 7119625 CAGGTTCAG------TCAAGAAACTTATAATATCATAGCAGCTCATGGTTATTTTGGCCG 7119678 Query 20012 ATTGATATTTCAATATGCTTCTTTCAATAATTCTCGTTCTTTACATTTCTTTCTTGCTAC 20071 |||||| ||| |||| || |||||| | || | || ||||| ||||| || ||| | Sbjct 7119679 ATTGAT-CTTCCATATACTAGTTTCAACAGCTC-CCATCATTACACTTCTTCCTAGCTGC 7119736 Query 20072 TTTCCCCGTGGTTGGCATATGGCTTACCTCC-ATGGGAATCTGCACTATGGCTTTCAACC 20130 | || | ||| | || | |||| |||| | || ||| |||||||||||||||||| Sbjct 7119737 CTGGCCTATAGTTCGTATCT-GCTTCACTCCTTTAGGTATCAGCACTATGGCTTTCAACC 7119795 Query 20131 TTAATGGTTTTAACTTTAACCAGTCAGTAGTTGATGTCAACGGAAAGATAATCCCAACAT 20190 | || ||||| || || ||||| || ||||||||| | | || |||| || | Sbjct 7119796 TAAACGGTTTCAATTTCAACCAATCTGTAGTTGATAGCCAAGGCTGTGTAATTAATACCT 7119855 Query 20191 GGGCTGATGTATTAAATAGAGCTAACCTCGGATTTGAAGTTATGCACGAGCGCAATGCTC 20250 ||| |||| | | || | |||||||| || | |||||||||| || || ||||||| Sbjct 7119856 GGGTTGATATGATCAACCGTGCTAACCTTGGTATGGAAGTTATGCGTGAACGTAATGCTC 7119915 Query 20251 ATAACTTCCCACTTGATTTAGCT 20273 |||||||||| || || ||||| Sbjct 7119916 ATAACTTCCCTCTAGACCTAGCT 7119938 >seq6 Length=25289714 Score = 141 bits (156), Expect = 3e-29 Identities = 181/247 (73%), Gaps = 2/247 (1%) Strand=Plus/Plus Query 19593 CACTTCTTAATAGGAGTAGCAGCATACGCTGGTAGACAGTGGGAACTATCTTACAGATTA 19652 |||||||||| || ||||| ||| ||| | |||||||||| || | | | Sbjct 6246886 CACTTCTTAAATGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTG 6246945 Query 19653 GGAATGAGACCATGGATATTCGTAGCATATACAGCACCACTATCAGCAGCTCTTGCTGTG 19712 || ||| ||| ||||| || |||||| || | || | |||| ||| ||||| Sbjct 6246946 GGTATGCGACATTGGATTGCTGTTGCATATCCAACTCCTGTTGCAGCTGCTACCGCTGT- 6247004 Query 19713 TTTCTCGTT-TACCCATTTGGGCAAGGGAGTTTTAGTGATGGTATGCCTCTTGGTATCTC 19771 ||||| | | |||||| | || ||||| |||||| ||||||||||||||| || || || Sbjct 6247005 TTTCTTGATCTACCCAATCGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATTTC 6247064 Query 19772 TGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAACACAATATCCTTATGCATCCGTT 19831 ||||||||| ||||| ||| | |||||||| || || || || ||||||||||| || || Sbjct 6247065 TGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCAGAACATCCTTATGCACCCATT 6247124 Query 19832 CCACATG 19838 |||||| Sbjct 6247125 TCACATG 6247131 >seq2 Length=18500646 Score = 116 bits (128), Expect = 1e-21 Identities = 158/219 (72%), Gaps = 1/219 (0%) Strand=Plus/Minus Query 19947 GGCTATAAGTTCGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTTT 20006 || || || ||||| ||||| ||||| || |||||||| || || || || || || ||| Sbjct 3034145 GGTTACAAATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGC-GCTCATGGTTATTTT 3034087 Query 20007 GGGAGATTGATATTTCAATATGCTTCTTTCAATAATTCTCGTTCTTTACATTTCTTTCTT 20066 || ||||||| || ||||||||| |||||| || |||| | ||||| ||||| || Sbjct 3034086 GGCCGATTGATCTTCCAATATGCTAATTTCAACAACTCTCATCTGTTACACTTCTTCCTA 3034027 Query 20067 GCTACTTTCCCCGTGGTTGGCATATGGCTTACCTCCATGGGAATCTGCACTATGGCTTTC 20126 | | ||| || || || ||||| ||| || | | || ||| || |||||||||| Sbjct 3034026 GTTGCTTGGCCTGTAGTGGGCATCTGGTCCACTGCTTTAGGTATCAGCGATATGGCTTTC 3033967 Query 20127 AACCTTAATGGTTTTAACTTTAACCAGTCAGTAGTTGAT 20165 || | || | ||| || || |||| | ||||||||| Sbjct 3033966 AATTTAAACGATTTCAATTTCGACCAACCTGTAGTTGAT 3033928 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 144413751298416