Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sesamum_20indicum_20[refseq_20GCF_5F000512975.1_202014-01-06] 16,236 sequences; 275,059,498 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq13 114 1e-20 seq15 105 7e-18 >seq13 Length=5050363 Score = 114 bits (126), Expect = 1e-20 Identities = 121/157 (77%), Gaps = 2/157 (1%) Strand=Plus/Minus Query 21476 CATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAA 21535 || |||||||||||||||||||||||||| | ||||||||||| || || || || Sbjct 3176219 CACGCAAAATCACAATGCAAACCTTCATCTCGCGAAATTAATTCATTGGAGAAAGTCAAG 3176160 Query 21536 CCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCT-CCTGAAAAGAA 21594 || ||||| | || | |||||| |||||||||| || |||| | ||| || || || || Sbjct 3176159 CCCGGCATCATCCCGCGCTTTTTCAACCAAAATA-TGGCGCAGAAGCTCCCCGAGAAAAA 3176101 Query 21595 AATGCCCTCAACGGCAGCAAATGCAACTAATCGTTCA 21631 || |||||||| |||||| || ||||| || ||| Sbjct 3176100 TATCCCCTCAACACAAGCAAAGGCGACTAACCGCTCA 3176064 >seq15 Length=10047770 Score = 105 bits (116), Expect = 7e-18 Identities = 121/160 (76%), Gaps = 2/160 (1%) Strand=Plus/Plus Query 21472 CAAACATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGT 21531 ||| || |||||||| || |||||||| ||||||| |||||||| || || || || Sbjct 1769302 CAAGCACGCAAAATCGCAGTGCAAACCCTCATCCCGTGAGATTAATTCGTTGGAGAAAGT 1769361 Query 21532 TAAACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGC-TCCTGAAA 21590 |||||| ||||| || || | ||| || | ||||||||||| | || | || ||| || | Sbjct 1769362 TAAACCCGGCATCAAACCACGCTTCTTCAGCCAAAATATTG-CACAGAAGCTTCCCGAGA 1769420 Query 21591 AGAAAATGCCCTCAACGGCAGCAAATGCAACTAATCGTTC 21630 | || ||||| || || ||||||| | | ||||||||| Sbjct 1769421 AAAATATGCCTTCCACACAAGCAAATCCGATTAATCGTTC 1769460 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531792850732640