Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sesamum_20indicum_20[refseq_20GCF_5F000512975.1_202014-01-06] 16,236 sequences; 275,059,498 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq15 183 4e-41 seq13 161 1e-34 seq9 89.7 6e-13 >seq15 Length=10047770 Score = 183 bits (202), Expect = 4e-41 Identities = 569/874 (65%), Gaps = 14/874 (2%) Strand=Plus/Plus Query 33012 TTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATT 33071 ||| || || || ||||| | ||| || || |||||||| || |||| ||| ||| Sbjct 1769014 TTTCTGATACTCCCCCACTCTTTTCTCAAAGAAATTAGTCTTCCCTTGCAAACTTATTAA 1769073 Query 33072 TTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAAT 33131 ||||| |||||||||| || |||| ||| | || | | |||||| || | Sbjct 1769074 CTCCATCCAATCAAACGGGTTTTGGACATAATACAACTTCCCATACCCCAATGCATTCAG 1769133 Query 33132 CAATCTATCCGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAA- 33190 ||||||||| || || || | || || |||||| ||| | |||||| || | | Sbjct 1769134 CAATCTATCAGCCACAAACTTAATGTACTGACTCATCAATTCTCCATTCATCCCCACCAA 1769193 Query 33191 -GTTTAACTGGAAGAGC--CGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTA 33247 | || || || || |||| | ||| || ||||||| ||||| || | | Sbjct 1769194 CGCGCAA--GGCAGCGCATCGCAC--ACAAACTCCCTTTCAATGTCCACCGCGTCCGCCA 1769249 Query 33248 TAATAGATCTAACGGTTTCTTCACTCGG-TGGATG--CAATAAATGTTTAAACATCAAAC 33304 || | | || | || || ||| | || ||| ||| || | | ||| | Sbjct 1769250 CTATCGCCTTCACTTTCTCCTCGCTCAACTTCATTTTCAACAAAC---TATAAAGCAAGC 1769306 Query 33305 ATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTC 33364 | || ||||||||||||| |||||| || | |||| ||||||||| || || | | Sbjct 1769307 ACGCAAAATCGCAGTGCAAACCCTCATCCCGTGAGATTAATTCGTTGGAGAAAGTTAAAC 1769366 Query 33365 CGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGA 33424 | ||||| | |||||||| || ||||||||||| | | ||| ||| || || || | Sbjct 1769367 CCGGCATCAAACCACGCTTCTTCAGCCAAAATATTGCACAGAAGCTTCCCGAGAAAAATA 1769426 Query 33425 TTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATGTATCC 33484 | ||||| || |||||| | || | || || || || | | ||| |||| Sbjct 1769427 TGCCTTCCACACAAGCAAATCCGATTAATCGTTCGGCAAAAGTTTCAGAGCCATCGATCC 1769486 Query 33485 ACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGA 33544 | | |||||| | |||||||| | ||||| || | || || || || ||| | Sbjct 1769487 AGCGTAAAGCCCATTTAGCCTTCTTCTCCACACATGGGACAGTCTCGATTGCGCGAAAAA 1769546 Query 33545 GATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCG 33604 | ||| || || ||| || | ||| | || | ||||||||||||||| || | Sbjct 1769547 GCATGTTCTTCTCGGCCGAATCCTTTATATAGGATTCAAGCAAAAGACTATACATCTCGG 1769606 Query 33605 AATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTA 33664 |||| ||||| |||||||| |||||||| || ||||| | |||||||| | ||| | Sbjct 1769607 AATGGATGTTCTCAATGGCAATCTGAAACCCATAGAAGGCACGAGCCTCGGAGACCTGAA 1769666 Query 33665 CTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAA 33724 |||| | || ||| | || | || || || || || ||| ||| || || | Sbjct 1769667 CTTCCTTCATGAAGCGTCCAGCAAGGTTCTCCAAAACAATGCCATCAGAGGCGGCGAAGA 1769726 Query 33725 ACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGA 33784 | || | || ||||| || |||| || ||||| | || || || | ||| | || Sbjct 1769727 AGGCGAGAACGTGTTTGATGAAATGCTTCTCGTCAGAAGTGAGGTTTTCCCAGTGGCGGA 1769786 Query 33785 TATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACA 33844 |||| || | ||| ||||| ||| | ||||| || || || || || || || |||| Sbjct 1769787 GGTCTTGGGACAAATCCACTTCCTCCGCAGTCCAGAAGGACGCTTCGGCTTTCTTGTACA 1769846 Query 33845 TGTTCCAGATGTCATAATATTGGATTGGGAAAAT 33878 | | |||||| | || ||||| ||||| || Sbjct 1769847 TTTCCCAGATTTGTGGGTACTGGATGGGGAACAT 1769880 >seq13 Length=5050363 Score = 161 bits (178), Expect = 1e-34 Identities = 368/551 (67%), Gaps = 2/551 (0%) Strand=Plus/Minus Query 33304 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 33363 || || ||||| || |||| ||| || |||| ||||| ||| ||||| || || | Sbjct 3176219 CACGCAAAATCACAATGCAAACCTTCATCTCGCGAAATTAATTCATTGGAGAAAGTCAAG 3176160 Query 33364 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAG 33423 || ||||| | || |||||||| | ||||||||||| ||| || || || || Sbjct 3176159 CCCGGCATCATCCCGCGCTTTTTCAACCAAAATATGGCGCAGAAGCTCCCCGAGAAAAAT 3176100 Query 33424 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATGTATC 33483 || || || || ||||||||| | | | ||| || | | | ||| ||| Sbjct 3176099 ATCCCCTCAACACAAGCAAAGGCGACTAACCGCTCAGCAAAGGATTCAGAGCCATCAATC 3176040 Query 33484 CA-CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAA 33542 || | || ||||| | ||||||||||| || ||||| | || || || || || Sbjct 3176039 CAGCGCATG-GCCCACTTGGCCTTCTTTTCCACGCAAGGAACGGTCTCAATTGCGCGGAA 3175981 Query 33543 GAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTC 33602 ||| | |||||| || ||||| | |||| || | || |||||| ||||| || Sbjct 3175980 GAGGTGGTTTTTCTCGGCCGAGTCTTTGATGTAAGACTCAAGCAGAAGACTGTACATCTC 3175921 Query 33603 CGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTG 33662 ||||||||||| |||||||| || || || |||||||| | ||||||| ||||| Sbjct 3175920 GGAATGAATGTTCTCAATGGCAATTTGGAAGCCGTAGAAGGCACGGGCCTCGGAGATCTG 3175861 Query 33663 TACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAA 33722 || ||| | || ||| | || | |||||| || || || || ||| ||||| Sbjct 3175860 GACCTCTTTCATGAAGCGTCCAGCGAGATTTTCCAAAACGATACCATCGGAGGCAGCAAA 3175801 Query 33723 AAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATT 33782 || || | || ||||| | |||| || ||||| | || || | ||||| Sbjct 3175800 GAAGGCGAGGACGTGTTTGACGAAATGCTTCTCGTCGGAGGTGAGGGCTTCCCAATGGCG 3175741 Query 33783 GATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATA 33842 || || | ||||| ||| ||||| || | ||||| || || || ||||| ||||| || Sbjct 3175740 GAGGTCCTGAGATAAATCAACTTCCTCGGCGGTCCAGAAGGAAGCTTCTGCTTTTTTGTA 3175681 Query 33843 CATGTTCCAGA 33853 ||| | ||||| Sbjct 3175680 CATCTCCCAGA 3175670 >seq9 Length=12411895 Score = 89.7 bits (98), Expect = 6e-13 Identities = 125/172 (73%), Gaps = 4/172 (2%) Strand=Plus/Minus Query 63111 TCTCTTTCGTA--TAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATC 63168 ||||| || || ||||||||| || | ||| || || || |||||| || | || | Sbjct 8674109 TCTCTCTCATACTTAGTGTATA-AAGC-TTCAAATTCTTCACCCCAACAATCAGCTAACC 8674052 Query 63169 CAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAA 63228 ||||| |||| |||||| | ||| ||||| | ||| | | | |||| || ||||| Sbjct 8674051 CAGGAGCCTCATTCGGACAAAACAATGACCATTGTCCATTAGATTGAACTCTTTGCATAA 8673992 Query 63229 AGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTC 63280 | |||||||| | ||||||||| |||||||||||| | || || ||||| Sbjct 8673991 ATAGATCAGGTACCCAAAGAGCATAAAATAGATCTCTTGCTCGGTGCTCCTC 8673940 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622820772865760