Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sesamum_20indicum_20[refseq_20GCF_5F000512975.1_202014-01-06] 16,236 sequences; 275,059,498 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq15 107 5e-18 seq3 87.8 5e-12 >seq15 Length=10047770 Score = 107 bits (118), Expect = 5e-18 Identities = 312/473 (66%), Gaps = 13/473 (3%) Strand=Plus/Minus Query 22483 TTCGCGGAACGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTT 22542 || || ||||| | || | ||||||| || |||||||| || || || ||| || Sbjct 1769466 TTTGCCGAACGATTAATCGGATTTGCTTGTGTGGAAGGCATATTTTTCTCGGGAAGCTTC 1769407 Query 22543 TGTGCAATCTTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAG 22602 |||||||| |||||||| || || |||| | ||||||||| |||| || || || || Sbjct 1769406 TGTGCAATATTTTGGCTGAAGAAGCGTGGTTTGATGCCGGGTTTAACTTTCTCCAACGAA 1769347 Query 22603 TTAATTAGCCGAGATGAGGGTCTTCATACCGATTTTGCGTGTATGCTATATCGGAATCAT 22662 ||||| || ||||||||| | || |||||||||||| |||| ||| | | Sbjct 1769346 TTAATCTCACGGGATGAGGGTTTGCACTGCGATTTTGCGTGCTTGCTTTAT----AGTTT 1769291 Query 22663 ATCATTCATAAACTT---CCATATGAAACTGTACTTGATATTATTACAAATGCAGTTGAA 22719 | || || || | | |||| || | |||| | | | || || || Sbjct 1769290 GTTGAAAATGAAGTTGAGCGAGGAGAAAGTGAAGGCGATA--GTGGCGGACGCGGTGGAC 1769233 Query 22720 CTTGAACGTCTATTTATTTGCGAGGCGTTACC-AGTAAGTCTCATTGGTATCAATGCCGA 22778 ||||| | ||| | ||||| ||| | || | || | | || || |||| || Sbjct 1769232 ATTGAAAGGGAGTTTGTGTGCGATGCGCTGCCTTGCGCGT-TGGTGGGGATGAATGGAGA 1769174 Query 22779 ATCAATGAGTACATATATTAAATTTGTTGCAGATCGTCTATTAATTTCACTCGGTTATGC 22838 || |||||| || ||||| ||||| || ||| | | | | | || | || |||| Sbjct 1769173 ATTGATGAGTCAGTACATTAAGTTTGTGGCTGATAGATTGCTGAATGCATTGGGGTATGG 1769114 Query 22839 AAAGCATTATAACGTCGTTAATCCATTTGAATGGATGGAACTTATTTCACTTG-AAGGAA 22897 ||| ||| | ||| || || ||||| ||||||| | ||| | ||| |||| | Sbjct 1769113 GAAGTTGTATTATGTCCAAAACCCGTTTGATTGGATGG-AGTTAATAAGTTTGCAAGGGA 1769055 Query 22898 AGACCAATTTCTTCGAAAAAAGAGTTGGTGAATACCAAAAAGCAGGTGTTATG 22950 |||| |||||||| || |||||||| || || || || ||||| ||||||| Sbjct 1769054 AGACTAATTTCTTTGAGAAAAGAGTGGGGGAGTATCAGAAAGCCTCTGTTATG 1769002 >seq3 Length=24928530 Score = 87.8 bits (96), Expect = 5e-12 Identities = 93/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 111702 CAGTTTTATGTACACGACGGGATGCTTTCATGCCAAATGTATCAGCGATCTGCTGATATT 111761 |||||||||||| | | || ||| || ||||| ||||| || |||||||| ||||| Sbjct 22618334 CAGTTTTATGTAGCCAATGGAGAGCTATCTTGCCAGATGTACCAACGATCTGCAGATATG 22618275 Query 111762 GGTCTTGGTGTTCCGTTTAATATTGCAAGTTACGCACTACTTACTTGCTTAATCGCTCAT 111821 || ||||| || |||||||| |||||| || || ||| | || ||| | || |||||| Sbjct 22618274 GGCCTTGGGGTGCCGTTTAACATTGCATCATATGCTCTATTGACATGCATGATTGCTCAT 22618215 Query 111822 TTT 111824 || Sbjct 22618214 GTT 22618212 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303082471496552