Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sesamum_20indicum_20[refseq_20GCF_5F000512975.1_202014-01-06] 16,236 sequences; 275,059,498 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq13 181 1e-40 seq15 179 5e-40 seq9 84.2 3e-11 >seq13 Length=5050363 Score = 181 bits (200), Expect = 1e-40 Identities = 390/578 (67%), Gaps = 4/578 (1%) Strand=Plus/Minus Query 32661 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 32720 || || ||||| || || | ||| || |||| ||||||||| ||||| || || | Sbjct 3176219 CACGCAAAATCACAATGCAAACCTTCATCTCGCGAAATTAATTCATTGGAGAAAGTCAAG 3176160 Query 32721 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCA-GAAAAGAA 32779 || ||||| | || |||||||| | ||||||||||| |||| | | ||| || || || Sbjct 3176159 CCCGGCATCATCCCGCGCTTTTTCAACCAAAATATGG-CGCAGAAGCTCCCCGAGAAAAA 3176101 Query 32780 AATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATGTAT 32839 || || || || |||||||| | | | ||| || | | | ||| || Sbjct 3176100 TATCCCCTCAACACAAGCAAAGGCGACTAACCGCTCAGCAAAGGATTCAGAGCCATCAAT 3176041 Query 32840 CCA-CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAA 32898 ||| | || ||||| | ||||||||||| || ||||| | ||||| || || | Sbjct 3176040 CCAGCGCATG-GCCCACTTGGCCTTCTTTTCCACGCAAGGAACGGTCTCAATTGCGCGGA 3175982 Query 32899 AGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTT 32958 |||| | |||||| || ||||| | || | |||| || |||||| ||||| | Sbjct 3175981 AGAGGTGGTTTTTCTCGGCCGAGTCTTTGATGTAAGACTCAAGCAGAAGACTGTACATCT 3175922 Query 32959 CCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCT 33018 | ||||||||||| |||||||| ||||| || ||||||||| | ||||||| |||| Sbjct 3175921 CGGAATGAATGTTCTCAATGGCAATTTGGAAGCCGTAGAAGGCACGGGCCTCGGAGATCT 3175862 Query 33019 GTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAA 33078 | || ||| | || ||| | || | |||||| || || || || ||| |||| Sbjct 3175861 GGACCTCTTTCATGAAGCGTCCAGCGAGATTTTCCAAAACGATACCATCGGAGGCAGCAA 3175802 Query 33079 AAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCAT 33138 | || || | || ||||| | |||| || ||||| | || || | ||||| Sbjct 3175801 AGAAGGCGAGGACGTGTTTGACGAAATGCTTCTCGTCGGAGGTGAGGGCTTCCCAATGGC 3175742 Query 33139 TGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTAT 33198 || || | ||||| ||| ||||| || | ||||| || || || ||||| ||||| | Sbjct 3175741 GGAGGTCCTGAGATAAATCAACTTCCTCGGCGGTCCAGAAGGAAGCTTCTGCTTTTTTGT 3175682 Query 33199 ACATATTCCAGATGTCATGATATTGAATTGGAAAAATA 33236 |||| | ||||| | | || ||||| || || ||| Sbjct 3175681 ACATCTCCCAGACCTGTGGGTAGTGAATGGGGAACATA 3175644 >seq15 Length=10047770 Score = 179 bits (198), Expect = 5e-40 Identities = 375/556 (67%), Gaps = 2/556 (0%) Strand=Plus/Plus Query 32657 CAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGT 32716 ||| || || ||||||||||| | |||||| || | |||||||||||||| || || Sbjct 1769302 CAAGCACGCAAAATCGCAGTGCAAACCCTCATCCCGTGAGATTAATTCGTTGGAGAAAGT 1769361 Query 32717 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCAGAAA 32775 | || ||||| | |||||||| || ||||||||||| | | || | | | || || | Sbjct 1769362 TAAACCCGGCATCAAACCACGCTTCTTCAGCCAAAATATTG-CACAGAAGCTTCCCGAGA 1769420 Query 32776 AGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCAT 32835 | || || ||||| || ||||| | || | || || || || | | ||| Sbjct 1769421 AAAATATGCCTTCCACACAAGCAAATCCGATTAATCGTTCGGCAAAAGTTTCAGAGCCAT 1769480 Query 32836 GTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCAT 32895 ||||| | |||||| | |||||||| | ||||| || | ||||| || || Sbjct 1769481 CGATCCAGCGTAAAGCCCATTTAGCCTTCTTCTCCACACATGGGACAGTCTCGATTGCGC 1769540 Query 32896 TAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACA 32955 ||| || ||| || || ||| || | ||| | |||| |||||||||||||| Sbjct 1769541 GAAAAAGCATGTTCTTCTCGGCCGAATCCTTTATATAGGATTCAAGCAAAAGACTATACA 1769600 Query 32956 TTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAA 33015 | || ||||| ||||| |||||||| || ||||| || |||||| | |||||||| | Sbjct 1769601 TCTCGGAATGGATGTTCTCAATGGCAATCTGAAACCCATAGAAGGCACGAGCCTCGGAGA 1769660 Query 33016 TCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTG 33075 ||| ||||| | || ||| | || | || || || || || ||| ||| | Sbjct 1769661 CCTGAACTTCCTTCATGAAGCGTCCAGCAAGGTTCTCCAAAACAATGCCATCAGAGGCGG 1769720 Query 33076 CAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAAT 33135 | || || || | || ||||| || |||| || ||||| | || || || | ||| | Sbjct 1769721 CGAAGAAGGCGAGAACGTGTTTGATGAAATGCTTCTCGTCAGAAGTGAGGTTTTCCCAGT 1769780 Query 33136 CATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTT 33195 || |||| || | ||||||||| ||| | ||||| || || || || || || | Sbjct 1769781 GGCGGAGGTCTTGGGACAAATCCACTTCCTCCGCAGTCCAGAAGGACGCTTCGGCTTTCT 1769840 Query 33196 TATACATATTCCAGAT 33211 | ||||| | |||||| Sbjct 1769841 TGTACATTTCCCAGAT 1769856 >seq9 Length=12411895 Score = 84.2 bits (92), Expect = 3e-11 Identities = 124/172 (72%), Gaps = 4/172 (2%) Strand=Plus/Minus Query 62966 TCTCTTTCGTA--TAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAGTC 63023 ||||| || || ||||||||| || | ||| || || || |||||| || | | | Sbjct 8674109 TCTCTCTCATACTTAGTGTATA-AAGC-TTCAAATTCTTCACCCCAACAATCAGCTAACC 8674052 Query 63024 CAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAA 63083 ||||| |||| |||||| | ||| ||||| | ||| | | | |||| || ||||| Sbjct 8674051 CAGGAGCCTCATTCGGACAAAACAATGACCATTGTCCATTAGATTGAACTCTTTGCATAA 8673992 Query 63084 AGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTC 63135 | |||||||| | ||||||||| |||||||||||| | || || ||||| Sbjct 8673991 ATAGATCAGGTACCCAAAGAGCATAAAATAGATCTCTTGCTCGGTGCTCCTC 8673940 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633503404385600