Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sesamum_20indicum_20[refseq_20GCF_5F000512975.1_202014-01-06] 16,236 sequences; 275,059,498 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq3 109 7e-19 seq13 89.7 6e-13 seq2 82.4 9e-11 >seq3 Length=24928530 Score = 109 bits (120), Expect = 7e-19 Identities = 192/277 (69%), Gaps = 2/277 (1%) Strand=Plus/Minus Query 10876 AAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCGGG 10935 ||| |||||||| || ||||| || ||||| ||||| || || | ||||||||| | Sbjct 23876494 AAATCCATCCATTTCCGTCAACAGCTGATTAATGGTCTGCTCTCTCTCATCATTCCCACC 23876435 Query 10936 CATACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACA 10995 | ||| || | | ||| | || ||||| ||||| ||||| ||||| || ||||| Sbjct 23876434 ACCAAGACCTGCTCCTCTCTGCCTTCCCACGGCATCAATCTCATCAATGAACACAATACA 23876375 Query 10996 CGGTTGATTTTCACG-GGCAACTTCAAAGATATCTCGGACTCTCTTGGCACCGACACCCA 11054 ||| | ||| || ||| ||||| | ||| | ||||| || || ||||||| Sbjct 23876374 AGGT-GCTTTCGACTTGGCCTTCTCAAACAAATCCCTCACTCTTGAAGCTCCTACACCCA 23876316 Query 11055 CAAACATTTCCACAAAATTGGCGGCGGAACATTGGATGAAGGGGACGTTGGATTCACCCG 11114 |||||| |||||||| | | || | |||| || ||||| || | ||||| | Sbjct 23876315 CAAACAGCTCCACAAACTCTGATGCTGCACATGAGAAAAAGGGCACCCCAGCCTCACCAG 23876256 Query 11115 CGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCAGG 11151 | | ||||| || |||||||||||||| || || || Sbjct 23876255 CCACGGCTCTTGCCAGGAGGGTCTTCCCAGTACCCGG 23876219 >seq13 Length=5050363 Score = 89.7 bits (98), Expect = 6e-13 Identities = 175/259 (68%), Gaps = 11/259 (4%) Strand=Plus/Minus Query 126064 ACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACCCCGCTT 126123 ||| || || || || || | |||||| ||||| || || ||||| | || ||||| Sbjct 3176199 ACCTTCATCTCGCGAAATTAATTCATTGGAGAAAGTCAAGCCCGGCATCATCCCGCGCTT 3176140 Query 126124 CTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACACGCGAA 126183 |||||||| || || || || || |||||||| || || ||||| ||||| || || Sbjct 3176139 TTTCAACCAAAATATGGCGCAGAAGCTCCCCGAGAAAAATATCCCCTCAACACAAGCAAA 3176080 Query 126184 CGCAAAGAGACGCTCAGCAAAGG----AGCGCGACTTTGTGTCAAACCACTTCATCGCCC 126239 || | | ||||||||||||| || || | |||| ||| ||| |||| Sbjct 3176079 GGCGACTAACCGCTCAGCAAAGGATTCAGAGCCA-------TCAATCCAGCGCATGGCCC 3176027 Query 126240 ACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTTCCTTCTTTT 126299 ||| ||||| || || | || || ||||||| || || ||||| | || || | Sbjct 3176026 ACTTGGCCTTCTTTTCCACGCAAGGAACGGTCTCAATTGCGCGGAAGAGGTGGTTTTTCT 3175967 Query 126300 CTGATGGATCTTTGATGTA 126318 | | | ||||||||||| Sbjct 3175966 CGGCCGAGTCTTTGATGTA 3175948 >seq2 Length=18500646 Score = 82.4 bits (90), Expect = 9e-11 Identities = 140/199 (70%), Gaps = 8/199 (4%) Strand=Plus/Minus Query 10876 AAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCGGG 10935 ||| |||||||| ||||||||||| ||||| || || || || | ||||||||| | Sbjct 3972028 AAATCCATCCATTTCAGTCAAGAGCTGATTAATAGTCTGCTCTCTTTCATCATTTCC--- 3971972 Query 10936 CATACCA---CCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGAT 10992 | |||| || || | | |||| |||| || || ||||||||||| ||||| || || Sbjct 3971971 CCCACCAAGTCCTGCCCCTCTTTGCCTACCCACAGCATCAATTTCATCAATGAACACAAT 3971912 Query 10993 ACACGGTTGATTTTCAC-GGGCAACTTCAAAGATATCTCGGACTCTCTTGGCACCGACAC 11051 || || | ||| || ||| ||||| | ||| | ||||| || || |||| Sbjct 3971911 GCAAGG-AGCTTTAGACTTGGCCTTATCAAACAAATCCCTCACTCTTGAAGCTCCAACAC 3971853 Query 11052 CCACAAACATTTCCACAAA 11070 | ||||||| || ||||| Sbjct 3971852 CTACAAACAACTCTACAAA 3971834 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597232367086880