Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sesamum_20indicum_20[refseq_20GCF_5F000512975.1_202014-01-06] 16,236 sequences; 275,059,498 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq3 116 5e-21 seq13 93.3 5e-14 seq2 89.7 6e-13 >seq3 Length=24928530 Score = 116 bits (128), Expect = 5e-21 Identities = 193/276 (70%), Gaps = 2/276 (1%) Strand=Plus/Minus Query 12792 AAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCACGTTCATCATTCGCGGGC 12851 || |||||||| || ||||| || ||||| ||||| || || | ||||||||| | Sbjct 23876493 AATCCATCCATTTCCGTCAACAGCTGATTAATGGTCTGCTCTCTCTCATCATTCCCACCA 23876434 Query 12852 ATACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCGTCAATGAAAACGATACAC 12911 | ||| || | | ||| | || ||||| ||||| || |||||||| || ||||| Sbjct 23876433 CCAAGACCTGCTCCTCTCTGCCTTCCCACGGCATCAATCTCATCAATGAACACAATACAA 23876374 Query 12912 GGTTGATTTTCACG-GGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCAC 12970 ||| | ||| || ||| ||||| | ||| | |||||| || || |||||||| Sbjct 23876373 GGT-GCTTTCGACTTGGCCTTCTCAAACAAATCCCTCACTCTTGAAGCTCCTACACCCAC 23876315 Query 12971 AAACATCTCCACAAAATTGGCGGCGGAACATTGGATGAAGGGGACGTTGGATTCACCCGC 13030 ||||| ||||||||| | | || | |||| || ||||| || | ||||| || Sbjct 23876314 AAACAGCTCCACAAACTCTGATGCTGCACATGAGAAAAAGGGCACCCCAGCCTCACCAGC 23876255 Query 13031 GATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGG 13066 | ||||| || |||||||||||||| || || || Sbjct 23876254 CACGGCTCTTGCCAGGAGGGTCTTCCCAGTACCCGG 23876219 >seq13 Length=5050363 Score = 93.3 bits (102), Expect = 5e-14 Identities = 174/255 (68%), Gaps = 3/255 (1%) Strand=Plus/Minus Query 127537 ACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTT 127596 ||| || || || || || | |||||| ||||| || || ||||| | || ||||| Sbjct 3176199 ACCTTCATCTCGCGAAATTAATTCATTGGAGAAAGTCAAGCCCGGCATCATCCCGCGCTT 3176140 Query 127597 CTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAA 127656 |||||||| || || || || || || ||||| || |||||||| ||||| || || Sbjct 3176139 TTTCAACCAAAATATGGCGCAGAAGCTCCCCGAGAAAAATATCCCCTCAACACAAGCAAA 3176080 Query 127657 CGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATCAAACCACTTCATCGCCCACTG 127716 || | || ||||| |||||||| || ||||| ||| ||| ||||||| Sbjct 3176079 GGCGACTAACCGCTCAGCAAAGGATTCAGAGCC---ATCAATCCAGCGCATGGCCCACTT 3176023 Query 127717 TGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAAGAGTTCCTTCTTTTCTGA 127776 ||||| || || | || || ||||||| || || ||||| | || || || | Sbjct 3176022 GGCCTTCTTTTCCACGCAAGGAACGGTCTCAATTGCGCGGAAGAGGTGGTTTTTCTCGGC 3175963 Query 127777 TGGATCTTTGATGTA 127791 | ||||||||||| Sbjct 3175962 CGAGTCTTTGATGTA 3175948 >seq2 Length=18500646 Score = 89.7 bits (98), Expect = 6e-13 Identities = 141/198 (71%), Gaps = 8/198 (4%) Strand=Plus/Minus Query 12792 AAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCACGTTCATCATTCGCGGGC 12851 || |||||||| ||||||||||| ||||| || || || || | ||||||||| | | Sbjct 3972027 AATCCATCCATTTCAGTCAAGAGCTGATTAATAGTCTGCTCTCTTTCATCATTTCC---C 3971971 Query 12852 ATACCA---CCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCGTCAATGAAAACGATA 12908 |||| || || | | |||| |||| || || |||||||| |||||||| || || Sbjct 3971970 CCACCAAGTCCTGCCCCTCTTTGCCTACCCACAGCATCAATTTCATCAATGAACACAATG 3971911 Query 12909 CACGGTTGATTTTCAC-GGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACC 12967 || || | ||| || ||| ||||| | ||| | |||||| || || ||||| Sbjct 3971910 CAAGG-AGCTTTAGACTTGGCCTTATCAAACAAATCCCTCACTCTTGAAGCTCCAACACC 3971852 Query 12968 CACAAACATCTCCACAAA 12985 ||||||| ||| ||||| Sbjct 3971851 TACAAACAACTCTACAAA 3971834 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613382688713760