Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sesamum_20indicum_20[refseq_20GCF_5F000512975.1_202014-01-06] 16,236 sequences; 275,059,498 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq13 111 3e-19 >seq13 Length=5050363 Score = 111 bits (122), Expect = 3e-19 Identities = 367/564 (65%), Gaps = 10/564 (2%) Strand=Plus/Minus Query 159917 AGGAGGCACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATG 159976 || ||||||||||| || || |||| || || || || || || || || ||||| | Sbjct 3176225 AGCAGGCACGCAAAATCACAATGCAAACCTTCATCTCGCGAAATTAATTCATTGGAGAAA 3176166 Query 159977 ATGAGGCCCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCACCGCTA 160036 | | ||||||||| ||||| ||| ||| | |||||| |||| |||| |||| || | | Sbjct 3176165 GTCAAGCCCGGCATCATCCCGCGCTTTTTCAACCAAAATATGG-CGCAGAAGCTCCCCGA 3176107 Query 160037 -AAAAAGATCCCCTCCACGGCCGCAAACGCCACGAGCCTCTCACCAAAAGAGGCGTTGGT 160095 ||||| |||||||| || ||||| || || | || |||| ||| ||| | | Sbjct 3176106 GAAAAATATCCCCTCAACACAAGCAAAGGCGACTAACCGCTCAGCAA---AGGATTCAGA 3176050 Query 160096 GTCATGGGTCCACCTTTTGGCCCATTCAGCCTTCTTTGCGATGCACGGCATGCGCTCGAC 160155 | ||| |||| | ||||||| | ||||||||| | | ||| || | | ||| | Sbjct 3176049 GCCATCAATCCAGCGCATGGCCCACTTGGCCTTCTTTTCCACGCAAGGAACGGTCTCAAT 3175990 Query 160156 GGCGTTAAACAATCTGTCCTGCTCCTTCACATCCTTGATCAGAGTAGCAATCAGCTTCGA 160215 ||| || | || | ||| | || ||||| || ||| ||| Sbjct 3175989 TGCGCGGAAGAGGTGGTTTTTCTCGGCCGAGTCTTTGATGTAAGACTCAAGCAGAAGACT 3175930 Query 160216 GTACATTTCTGCGTGCACATTTTCGATGGCCATCTGAAAGTTGTAGAAATATGTCGCCTC 160275 |||||| || | || | || || ||||| || || ||| |||||| ||||| Sbjct 3175929 GTACATCTCGGAATGAATGTTCTCAATGGCAATTTGGAAGCCGTAGAAGGCACGGGCCTC 3175870 Query 160276 -CAGATACTGCACCTCCTGTGTGAACCTTTGACCCAGATTGGCATTAACCAACCCGTCGG 160334 |||| ||| ||||| | |||| | | | | ||||| | ||| | || |||| Sbjct 3175869 GGAGAT-CTGGACCTCTTTCATGAAGCGTCCAGCGAGATTTTCCAAAACGATACCATCGG 3175811 Query 160335 CGGCCGCAAAGAAAGCCAACACGTGAGAGATGAAATGTCTCTCGTCTTTGTTGAGTCTCT 160394 ||| |||||||| || | ||||| || |||||| ||||||| | |||| Sbjct 3175810 AGGCAGCAAAGAAGGCGAGGACGTGTTTGACGAAATGCTTCTCGTCGGAGGTGAG---GG 3175754 Query 160395 TTTCCCAGTGTGTCACGTCTTGGGCCAAATCAACCTCTTCCGCGCTCCAATTGGCAGCCT 160454 |||||| || | ||| || | |||||||| || || ||| |||| || ||| | Sbjct 3175753 CTTCCCAATGGCGGAGGTCCTGAGATAAATCAACTTCCTCGGCGGTCCAGAAGGAAGCTT 3175694 Query 160455 GAGCAGTTTTGTACATGGCCCAGA 160478 || |||||||||| |||||| Sbjct 3175693 CTGCTTTTTTGTACATCTCCCAGA 3175670 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 794993823252160