Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sesamum_20indicum_20[refseq_20GCF_5F000512975.1_202014-01-06] 16,236 sequences; 275,059,498 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq11 113 3e-20 seq8 104 2e-17 seq5 98.7 7e-16 >seq11 Length=15446199 Score = 113 bits (124), Expect = 3e-20 Identities = 156/216 (72%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 39505 CGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCA 39564 ||||| |||||||| | ||| ||| ||||| ||||| || ||||| | | | || Sbjct 13442068 CGCAGCACCAAATGAAGAGTCGATTCCTTTTGAATATTGTAGTCGGCTAGAGTTCTACCA 13442009 Query 39565 TCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTG 39624 || |||| |||||| ||| | || || || | |||||||| | |||| ||||| ||| Sbjct 13442008 TCCTCCAGTTGTTTTCCGGCGAAGATCAACCTTTGCTGATCGGGCGGTATCCCTTCCTTG 13441949 Query 39625 TCGCATATTTTTTGTTTAATCGTCG-CTACTGTGTCTGCGCTTTCCACGTCCAAAGTAAT 39683 || ||||| || | ||| | ||| ||||||| ||| ||||| || | || || Sbjct 13441948 TCCTGAATTTTAGCCTTGA-CGTTGTCTATGGTGTCTGAGCTCTCCACCTCGAGGGTGAT 13441890 Query 39684 TGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 |||||| || || | ||||||||| ||||||||||| Sbjct 13441889 TGTTTTGCCGGTCAGAGTTTTTACAAAGATCTGCAT 13441854 Score = 109 bits (120), Expect = 4e-19 Identities = 165/230 (72%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || |||| | ||| |||||||||||||| || || || ||||||||||||||| Sbjct 13442308 CCACCGCGCAGCCTCAGGACCAAATGCAAAGTCGACTCCTTCTGAATATTATAATCGGCC 13442249 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | | | | |||| ||||| || || || | ||||| | | ||| ||||| | || Sbjct 13442248 AGAGTCCTTCCATCTTCCAACTGCTTGCCAGCGAAAATCAGCCTCTGTTGATCTGGTGGA 13442189 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTG--TTTA-ATCGTCGCTACTGTGTCTGCGCTTTCC 39669 | ||||||||||| | | |||||| |||| || || | | ||| || | ||| || Sbjct 13442188 ATTCCTTCTTTGTC-CTGAATTTTTGCTTTTACATTGT--CAATTGTATCAGAGCTCTCA 13442132 Query 39670 ACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || |||| ||||| || || ||||| | |||||||| || |||||||| Sbjct 13442131 ACTTCCAGGGTAATAGTCTTGCCCGTCAGGGTTTTTACAAAAATCTGCAT 13442082 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || | ||| ||||| || | ||| | || |||||| || ||||| ||||| ||| Sbjct 11225743 CCACCCCTCAACCGCAGCACAAGATGAAGGGTTGATTCTTTCTGGATATTGTAATCTGCC 11225684 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | | | |||| || | |||||| ||| |||| || || | |||||| || | || Sbjct 11225683 AGCGTCCTTCCATCTTCAAGTTGTTTACCGGCAAAGATCAATCTCTGCTGGTCAGGAGGG 11225624 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | ||||||||||| |||||| |||| | | | ||| |||| ||||| || Sbjct 11225623 ATTCCTTCTTTGTCCTGGATTTTTGCCTTAACATTGTCAATTGTATCTGAACTTTCAACT 11225564 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 |||| |||||| || ||||| || | ||| ||||| || |||||||| Sbjct 11225563 TCCAGAGTAATCGTCTTACCAGTAAGAGTCTTTACAAAAATCTGCAT 11225517 Score = 98.7 bits (108), Expect = 7e-16 Identities = 142/198 (72%), Gaps = 12/198 (6%) Strand=Plus/Minus Query 39528 TTCTTTTTGTATATTATAATCGGCCAAAACGCGTTC----ATCGTCCAATTGTTTCCCGC 39583 ||| || || ||||| |||||||| | | |||| ||| ||||| |||||||| Sbjct 13445117 TTCCTTCTGAATATTGTAATCGGCTA----GGGTTCTGCCATCCTCCAACTGTTTCCCAG 13445062 Query 39584 CAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAA 39643 | ||||| | |||||||||||||| || | ||||| ||||| || || |||| Sbjct 13445061 CGAAAATCAGACGCTGCTGATCCGGTGGAATTCCTTCCTTGTCCTGGATCTTGGCCTTAA 13445002 Query 39644 --TCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGT 39701 | |||| | ||||||| | |||| || || | |||||||||||| || |||| || Sbjct 13445001 CATTGTCGATG--GTGTCTGAGGTTTCGACTTCGAGAGTAATTGTTTTGCCAGTTAGGGT 13444944 Query 39702 TTTTACGAAGATCTGCAT 39719 ||| || ||||| ||||| Sbjct 13444943 TTTCACAAAGATTTGCAT 13444926 Score = 89.7 bits (98), Expect = 4e-13 Identities = 162/233 (70%), Gaps = 3/233 (1%) Strand=Plus/Minus Query 39488 CATCGCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAAT 39547 |||| |||||||||| ||| || || | || | ||| || || || || || |||| Sbjct 13441856 CATC-CCGCCTCGCAGACGGAGGACGAGGTGGAGCGTGGACTCCTTCTGGATGTTGTAAT 13441798 Query 39548 CGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCG 39607 ||||||| | | || || | || |||||| | || || | ||||||||||||| Sbjct 13441797 CGGCCAAGGTTCTGCCGTCTTCGAGCTGCTTCCCGGCGAAGATGAGGCGCTGCTGATCCG 13441738 Query 39608 AGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCG-CTACTGTGTCTGCGCTT 39666 || | || || ||||| || || || | ||| | ||| ||||||| ||| Sbjct 13441737 GCGGAATTCCCTCCTTGTCTTGGATCTTAGCCTTGA-CGTTGTCTATGGTGTCTGAGCTC 13441679 Query 39667 TCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 ||||| |||| || || ||||| || || | |||||| |||||||||||||| Sbjct 13441678 TCCACCTCCAGCGTGATCGTTTTTCCGGTCAGAGTTTTCACGAAGATCTGCAT 13441626 >seq8 Length=21523998 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 39523 GTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCG 39582 ||||||||||| ||||| || || |||| |||| |||||| || |||| || || ||| Sbjct 16226399 GTGCTTTCTTTCTGTATGTTGTAGTCGGACAAAGTGCGTTCGTCTTCCAGCTGCTTGCCG 16226340 Query 39583 CCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTA 39642 | || || | || || || |||| || || |||||||| || ||||| || Sbjct 16226339 GCGAATATCAGTCGTTGTTGGTCCGGAGGAACCCCTTCTTTTTCTTGAATTTTGGACTTC 16226280 Query 39643 ATCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTT 39702 | | |||| ||||| | || ||||| |||| ||| || ||||| || || || || Sbjct 16226279 ACATTTTCTACAGTGTCCGTACTCTCCACATCCAGAGTTATGGTTTTTCCGGTCAAGGTC 16226220 Query 39703 TTTACGAAGATCTGCAT 39719 || |||||||||||||| Sbjct 16226219 TTAACGAAGATCTGCAT 16226203 >seq5 Length=18898134 Score = 98.7 bits (108), Expect = 7e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 39528 TTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAA 39587 |||||| || || |||||||| || | || |||| || | || ||||| |||| Sbjct 2598684 TTCTTTCTGGATGTTATAATCTGCAAGGGTACGGCCATCTTCGAGCTGCTTCCCTGCAAA 2598743 Query 39588 AATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGT 39647 || | ||||||||||||| |||| ||||| ||||| |||||| || | | Sbjct 2598744 GATCAGCCGCTGCTGATCCGGTGGTATCCCTTCCTTGTCCTGAATTTTTGCCTTCACATT 2598803 Query 39648 CGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTAC 39707 | | ||| || | ||||||||| |||||||| ||||| || || || ||||| ||||| Sbjct 2598804 ATCAATTGTATCAGAGCTTTCCACCTCCAAAGTGATTGTCTTCCCTGTCAAAGTCTTTAC 2598863 Query 39708 GAAGATCTGCAT 39719 ||||| ||||| Sbjct 2598864 AAAGATTTGCAT 2598875 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347300863806188