Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sesamum_20indicum_20[refseq_20GCF_5F000512975.1_202014-01-06] 16,236 sequences; 275,059,498 total letters Query= NC_015287.1 Length=232878 Score E Sequences producing significant alignments: (Bits) Value seq16236 544 1e-149 seq8 302 7e-77 seq6 150 3e-31 seq2 123 4e-23 seq3 100 4e-16 >seq16236 Length=153324 Score = 544 bits (602), Expect = 1e-149 Identities = 700/966 (72%), Gaps = 0/966 (0%) Strand=Plus/Minus Query 215315 ACTGACAATCGTATCTACGTTGGTTGGTTTGGTGTCCTCATGATTCCTTGCCTCCTCGCA 215374 || || || ||| | ||| |||| ||||||||||| | ||||| ||| | | | | Sbjct 1372 ACCGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACC 1313 Query 215375 GCTACCACTTGTTTCATCGTAGCATTCATCGCTGCACCTCCTGTCGATATCGACGGAATC 215434 || || || || || | || ||||| ||||| ||||| || ||||| || || || Sbjct 1312 GCAACTTCTGTATTTATTATTGCCTTCATTGCTGCCCCTCCAGTAGATATTGATGGTATT 1253 Query 215435 AGAGAGCCAGTTGCTGGTTCTTTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTA 215494 | || || ||| |||| |||||| | || || ||||| || ||||| ||||| || | Sbjct 1252 CGTGAACCTGTTTCTGGATCTTTACTTTACGGAAACAATATTATCTCAGGTGCCATTATT 1193 Query 215495 CCTAGTTCAAACGCAATCGGATTACACTTCTACCCTATCTGGGAAGCAGCAACAGTTGAC 215554 |||| ||| || ||||| || ||||| ||||| || |||||||||||| | ||||| Sbjct 1192 CCTACTTCTGCAGCTATCGGTTTGCACTTTTACCCAATTTGGGAAGCAGCATCCGTTGAT 1133 Query 215555 GAATGGCTCTACAATGGTGGACCTTTCCAACTGGTTATCTTCCACTTCCTCATTGGTATT 215614 |||||| | ||||| ||||| |||| |||| || | | |||||| | ||||| | Sbjct 1132 GAATGGTTATACAACGGTGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTA 1073 Query 215615 TCTGCATACTGCGGAAGACAGTGGGAACTTTCTTACAGATTAGGTATGAGACCTTGGATC 215674 || ||| || | ||||||||||| || | | | |||||| |||||||||| Sbjct 1072 GCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGACCTTGGATT 1013 Query 215675 TGTGTTGCTTACTCCGCACCTGTATCTGCTGCCTTTGCAGTATTCCTTGTGTATCCATTC 215734 |||||| || || || ||||| | ||||| || || ||| | | || ||| || Sbjct 1012 GCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACCGCTGTTTTCTTGATCTACCCAATC 953 Query 215735 GGTCAGGGTTCTTTCTCTGATGCTATGCCACTTGGAATCTCTGGAACATTCAACTACATG 215794 ||||| || ||| ||||||| |||||| || ||||| ||||| || ||||||| |||| Sbjct 952 GGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATG 893 Query 215795 TTTGTTTTCCAGGCTGAGCACAACATTCTGATGCACCCATTCCACATGTTAGGTGTGGCT 215854 |||| |||||||||||||||||||| || ||||||||||| ||||||||||| || ||| Sbjct 892 ATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAGGCGTAGCT 833 Query 215855 GGTGTCTTCGGTGGTTCATTGTTCTCTGCAATGCACGGTTCACTTGTTACATCTTCTCTA 215914 ||||| ||||| || || | ||| ||| ||||| ||||| | || || ||| | | Sbjct 832 GGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTG 773 Query 215915 ATCAGAGAGACAACTGAGCAAGAATCTCAGAACTACGGTTACAAGTTCGGACAAGAGGAG 215974 ||||| || || || || | |||||| || | ||||||| ||||| |||||||| Sbjct 772 ATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAA 713 Query 215975 GAAACATACAACATCGTAGCTGCACACGGTTACTTTGGTCGCCTCATCTTCCAATACGCA 216034 ||||| || || |||||||| || || ||||| ||||| || | ||||||||||| || Sbjct 712 GAAACTTATAATATCGTAGCCGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCT 653 Query 216035 TCTTTCAACAACTCAAGAAGTCTTCACTTCTTCCTTGCAGCATTCCCTGTTATTTGTATC 216094 |||||||||||| | | ||||||||||| || || | ||||| | ||||| Sbjct 652 AGTTTCAACAACTCTCGTTCGTTACACTTCTTCCTAGCTGCTTGGCCTGTAGTGGGTATC 593 Query 216095 TGGGCAACTGCAATGGGTGTCTCAACTATGGCGTTCAACCTTAACGGTTTCAACTTCAAC 216154 ||| ||||| | ||| || |||||||| |||||||| ||||||||||| |||||| Sbjct 592 TGGTTCACTGCTTTAGGTATCAGCACTATGGCTTTCAACCTAAACGGTTTCAATTTCAAC 533 Query 216155 CAGTCTGTCGTAGACGCATCTGGTAAAGTTATTCCTACTTGGGCAGACGTTCTTAACAGA 216214 || ||||| || || || || ||| ||||||||| || | | ||| | Sbjct 532 CAATCTGTAGTTGATAGTCAAGGCCGTGTAATTAATACTTGGGCTGATATCATCAACCGT 473 Query 216215 GCAGGACTTGGTATGGAAGTAATGCACGAGCGTAACGCTCACAACTTCCCATTAGACTTG 216274 || |||||||||||||| ||||| || ||||| ||||| |||||||| ||||| | Sbjct 472 GCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGACCTA 413 Query 216275 GCTGCT 216280 |||||| Sbjct 412 GCTGCT 407 >seq8 Length=21523998 Score = 302 bits (334), Expect = 7e-77 Identities = 434/606 (72%), Gaps = 12/606 (2%) Strand=Plus/Plus Query 215677 TGTTGCTTACTCCGCACCTGTATCTGCTGCCTTTGCAGTATTC-CTTG-TGTATCCATTC 215734 |||||| || || || | ||| | ||||| | || |||| |||| | || ||| || Sbjct 7119346 TGTTGCATATTCAGCTCGTGTTGCAGCTGC--TACCACTATTTTCTTGATCTACCCAATC 7119403 Query 215735 GGTCAGGGTTCTTTCTCTGATGCTATGCCACTTGGAATCTCTGGAACATTCAACTACATG 215794 | ||| || ||| ||||||| |||||| || ||||| ||||| || ||||||| |||| Sbjct 7119404 GATCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATG 7119463 Query 215795 TTTGTTTTCCAGGCTGAGCACAACATTCTGATGCACCCATTCCACATGTTAGGTGTGGCT 215854 |||| ||||||||||||||||||| || ||||||||||| |||||||||||||| ||| Sbjct 7119464 ATTGTATTCCAGGCTGAGCACAACAACCTTATGCACCCATTTCACATGTTAGGTGTAGCT 7119523 Query 215855 GGTGTCTTCGGTGGTTCATTGTTCTCTGCAATGCACGGTTCACTTGTTACATCTTCTCTA 215914 ||||| ||||| ||||| | ||| ||| ||||| ||||| | || || ||| | | Sbjct 7119524 GGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTG 7119583 Query 215915 ATCAGAGAGACAACTGAGCAAGAATCTCAGAACTACGGTTACAAGTTCGGACAAGAGGAG 215974 ||||| || || || || | |||||| || | ||| ||| |||| | ||| Sbjct 7119584 ATCAGGGAAACCACAGAAAATGAATCTGCTAAAGAAGGTCACAGGTTCAGTCAA------ 7119637 Query 215975 GAAACATACAACATCGTAGCTGCACACGGTTACTTTGGTCGCCTCATCTTCCAATACGCA 216034 ||||| || || ||| |||| || || ||||| ||||| || | ||||||| ||| | Sbjct 7119638 GAAACTTATAATATCATAGCAGCTCATGGTTATTTTGGCCGATTGATCTTCC-ATATACT 7119696 Query 216035 TCTTTCAACAACTCAAGAAGTCTTCACTTCTTCCTTGCAGCATTCCCTGTTATTTGTATC 216094 |||||||| ||| | | ||||||||||| || || | ||| | || ||||| Sbjct 7119697 AGTTTCAACAGCTC-CCATCATTACACTTCTTCCTAGCTGCCTGGCCTATAGTTCGTATC 7119755 Query 216095 TGGGCAACTGCAATGGGTGTCTCAACTATGGCGTTCAACCTTAACGGTTTCAACTTCAAC 216154 || ||| | | ||| || |||||||| |||||||| ||||||||||| |||||| Sbjct 7119756 TGCTTCACTCCTTTAGGTATCAGCACTATGGCTTTCAACCTAAACGGTTTCAATTTCAAC 7119815 Query 216155 CAGTCTGTCGTAGACGCATCTGGTAAAGTTATTCCTACTTGGGCAGACGTTCTTAACAGA 216214 || ||||| || || || || ||| ||| |||| || | | ||| | Sbjct 7119816 CAATCTGTAGTTGATAGCCAAGGCTGTGTAATTAATACCTGGGTTGATATGATCAACCGT 7119875 Query 216215 GCAGGACTTGGTATGGAAGTAATGCACGAGCGTAACGCTCACAACTTCCCATTAGACTTG 216274 || |||||||||||||| |||| || ||||| ||||| |||||||| ||||| | Sbjct 7119876 GCTAACCTTGGTATGGAAGTTATGCGTGAACGTAATGCTCATAACTTCCCTCTAGACCTA 7119935 Query 216275 GCTGCT 216280 |||||| Sbjct 7119936 GCTGCT 7119941 >seq6 Length=25289714 Score = 150 bits (166), Expect = 3e-31 Identities = 160/211 (76%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 215634 AGTGGGAACTTTCTTACAGATTAGGTATGAGACCTTGGATCTGTGTTGCTTACTCCGCAC 215693 ||||||||||| || | | | |||||| ||| |||||| |||||| || | | | Sbjct 6246923 AGTGGGAACTTAGTTTCCGTCTGGGTATGCGACATTGGATTGCTGTTGCATATCCAACTC 6246982 Query 215694 CTGTATCTGCTGCCTTTGCAGTATTCCTTGTGTATCCATTCGGTCAGGGTTCTTTCTCTG 215753 |||| | ||||| || || ||| | | || ||| ||||||| || ||| |||| Sbjct 6246983 CTGTTGCAGCTGCTACCGCTGTTTTCTTGATCTACCCAATCGGTCAAGGAAGTTTTTCTG 6247042 Query 215754 ATGCTATGCCACTTGGAATCTCTGGAACATTCAACTACATGTTTGTTTTCCAGGCTGAGC 215813 ||| |||||| || ||||| ||||| || ||||||| |||| |||| ||||||||||||| Sbjct 6247043 ATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGC 6247102 Query 215814 ACAACATTCTGATGCACCCATTCCACATGTT 215844 | ||||| || ||||||||||| |||||||| Sbjct 6247103 AGAACATCCTTATGCACCCATTTCACATGTT 6247133 >seq2 Length=18500646 Score = 123 bits (136), Expect = 4e-23 Identities = 161/219 (74%), Gaps = 3/219 (1%) Strand=Plus/Minus Query 215951 GGTTACAAGTTCGGACAAGAGGAGGAAACATACAACATCGTAGCTGCACACGGTTACTTT 216010 |||||||| ||||| |||||||| ||||| || || |||||||| || || ||||| ||| Sbjct 3034145 GGTTACAAATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGC-GCTCATGGTTATTTT 3034087 Query 216011 GGTCGCCTCATCTTCCAATACGCATCTTTCAACAACTCAAGAAGTCTT-CACTTCTTCCT 216069 || || | ||||||||||| || |||||||||||| | | || ||||||||||| Sbjct 3034086 GGCCGATTGATCTTCCAATATGCTAATTTCAACAACTCTC-ATCTGTTACACTTCTTCCT 3034028 Query 216070 TGCAGCATTCCCTGTTATTTGTATCTGGGCAACTGCAATGGGTGTCTCAACTATGGCGTT 216129 | || | ||||| | | |||||| | ||||| | ||| || |||||| || Sbjct 3034027 AGTTGCTTGGCCTGTAGTGGGCATCTGGTCCACTGCTTTAGGTATCAGCGATATGGCTTT 3033968 Query 216130 CAACCTTAACGGTTTCAACTTCAACCAGTCTGTCGTAGA 216168 ||| | |||| |||||| ||| |||| |||| || || Sbjct 3033967 CAATTTAAACGATTTCAATTTCGACCAACCTGTAGTTGA 3033929 >seq3 Length=24928530 Score = 100 bits (110), Expect = 4e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 215826 TGCACCCATTCCACATGTTAGGTGTGGCTGGTGTCTTCGGTGGTTCATTGTTCTCTGCAA 215885 |||||| ||| ||||||||||| | |||||||| ||||| || || | ||| || | Sbjct 17256211 TGCACCTATTTCACATGTTAGGCATAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGTTA 17256270 Query 215886 TGCACGGTTCACTTGTTACATCTTCTCTAATCAGAGAGACAACTGAGCAAGAATCTCAGA 215945 |||| ||||| | || || || | ||||| || || || || | |||| | | Sbjct 17256271 TGCATGGTTCCTTGGTAACTTCAAGGTTGATCAGGGAAACCACAGAAAATGAATATGCTA 17256330 Query 215946 ACTACGGTTACAAGTTCGGACAAGAGGAGGAAACATACAACATCGTAGCTGCACACGGTT 216005 | | |||||||| ||||| |||||| | ||||| || || ||||||| || || |||| Sbjct 17256331 ATGAAGGTTACAAATTCGGTCAAGAGAAAGAAACTTATAATATCGTAGTAGCTCATGGTT 17256390 Query 216006 ACTTTGGTCGCCTCATCT 216023 | ||||| || | |||| Sbjct 17256391 ATTTTGGCCGATTGATCT 17256408 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 744930385689280