Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sesamum_20indicum_20[refseq_20GCF_5F000512975.1_202014-01-06] 16,236 sequences; 275,059,498 total letters Query= NC_015290.1 Length=182180 Score E Sequences producing significant alignments: (Bits) Value seq16236 549 2e-151 seq8 269 3e-67 seq6 161 1e-34 seq2 111 2e-19 seq3 84.2 3e-11 >seq16236 Length=153324 Score = 549 bits (608), Expect = 2e-151 Identities = 703/969 (73%), Gaps = 0/969 (0%) Strand=Plus/Minus Query 169699 TGGGTAACAAGCACAAACAACCGCATCTATGTTGGTTGGTTCGGTGTCTTGATGATCCCA 169758 ||| |||| ||||| | ||||| | || |||| ||||| ||||| ||||||||||| Sbjct 1384 TGGATAACCAGCACCGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCT 1325 Query 169759 TGTCTATTAGCAGCAGCAACCTGCTTTATCGTTGCTTTCATCGCAGCTCCACCTGTGGAC 169818 |||| | ||| | | ||||| |||| ||||| || || || || || || Sbjct 1324 ACCTTATTGACCGCAACTTCTGTATTTATTATTGCCTTCATTGCTGCCCCTCCAGTAGAT 1265 Query 169819 ATCGATGGAATCAGAGAACCTGTAGCAGGTTCATTCATGTATGGTAACAACATCATCTCT 169878 || ||||| || | |||||||| | || || || | || || ||||| || ||||| Sbjct 1264 ATTGATGGTATTCGTGAACCTGTTTCTGGATCTTTACTTTACGGAAACAATATTATCTCA 1205 Query 169879 GGTGCAGTTGTTCCATCTTCAAACGCAATCGGTCTCCACTTCTATCCTATTTGGGAAGCA 169938 ||||| || |||| |||| || |||||| | ||||| || || |||||||||||| Sbjct 1204 GGTGCCATTATTCCTACTTCTGCAGCTATCGGTTTGCACTTTTACCCAATTTGGGAAGCA 1145 Query 169939 GCAACTCTAGATGAGTGGTTGTATAACGGTGGTCCTTATCAATTAGTTATCTTCCACTTC 169998 ||| | | ||||| ||||| || ||||||||||||||| || || || | | |||||| Sbjct 1144 GCATCCGTTGATGAATGGTTATACAACGGTGGTCCTTATGAACTAATTGTTCTACACTTC 1085 Query 169999 CTTATCGGAATCTCTGCCTACATGGGTAGACAGTGGGAACTATCATACCGTTTAGGTATG 170058 | | || | || ||||||||| | |||||||||| | |||| | |||||| Sbjct 1084 TTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATG 1025 Query 170059 CGTCCTTGGATCTGTGTAGCATATTCTGCTCCAGTGTCAGCAGCATTCGCTGTATTCTTA 170118 || |||||||| ||| |||||||| ||||| || |||| || |||||| ||||| Sbjct 1024 CGACCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACCGCTGTTTTCTTG 965 Query 170119 GTGTATCCTTTCGGTCAGGGATCTTTCTCAGACGGAATGCCTCTAGGTATCTCAGGTACA 170178 | || || ||||||| ||| ||| || || || ||||||||||| || || ||||| Sbjct 964 ATCTACCCAATCGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACT 905 Query 170179 TTTAACTTCATGTTCGTATTCCAAGCAGAGCACAACATTCTTATGCACCCATTCCATATG 170238 || ||||||||| | |||||||| || ||||||||||| |||||||||||||| || ||| Sbjct 904 TTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATG 845 Query 170239 GCAGGGGTTGCTGGTATGTTCGGAGGAGCACTCTTCTCAGCAATGCACGGTTCACTTGTA 170298 ||| || |||||| | ||||| || | || ||| || ||||| ||||| | ||| Sbjct 844 TTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCCTTGGTA 785 Query 170299 ACATCTTCTCTAATCAGAGAGACAACAGATAACGAGTCACAGAACTATGGATACAAATTC 170358 || ||| | | ||||| || || ||||| || || || || | || |||| |||| Sbjct 784 ACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTC 725 Query 170359 GGACAAGAAGAAGAAACATACAACATTGTTGCAGCACATGGATACTTTGGTAGACTTATC 170418 || ||||| |||||||| || || || || || || ||||| || ||||| || | ||| Sbjct 724 GGTCAAGAGGAAGAAACTTATAATATCGTAGCCGCTCATGGTTATTTTGGCCGATTGATC 665 Query 170419 TTCCAATATGCTAGCTTTAACAATAGTCGTAGTCTTCACTTCTTCCTTGCTACATTCCCT 170478 |||||||||||||| || ||||| |||| | ||||||||||| ||| | | ||| Sbjct 664 TTCCAATATGCTAGTTTCAACAACTCTCGTTCGTTACACTTCTTCCTAGCTGCTTGGCCT 605 Query 170479 GTAGTATGCATCTGGTTAACTTCAATGGGTATTTGCACAATGGCATTTAACCTTAATGGA 170538 ||||| | |||||||| ||| | | ||||| |||| ||||| || ||||| || || Sbjct 604 GTAGTGGGTATCTGGTTCACTGCTTTAGGTATCAGCACTATGGCTTTCAACCTAAACGGT 545 Query 170539 TTTAACTTCAACCAGTCAATCGTAGATGGATCTGGTAAAGTAGTTCCTACATGGGCAGAC 170598 || || |||||||| || | || ||| | || ||| || ||| ||||| || Sbjct 544 TTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGCCGTGTAATTAATACTTGGGCTGAT 485 Query 170599 GTTCTTAACAGAGCAAACCTAGGTATGGAAGTAATGCATGAGCGTAATGCACACAACTTC 170658 | | ||| | || ||||| ||||||||||| |||||||| |||||||| || |||||| Sbjct 484 ATCATCAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTC 425 Query 170659 CCACTTGAC 170667 || || ||| Sbjct 424 CCTCTAGAC 416 >seq8 Length=21523998 Score = 269 bits (298), Expect = 3e-67 Identities = 418/595 (70%), Gaps = 8/595 (1%) Strand=Plus/Plus Query 170073 TGTAGCATATTCTGCTCCAGTGTCAGCAGCATTCGCTGTATTCTTAGTGTATCCTTTCGG 170132 ||| |||||||| |||| || |||| || | || | ||||| | || || ||| Sbjct 7119346 TGTTGCATATTCAGCTCGTGTTGCAGCTGCTACCACTATTTTCTTGATCTACCCAATCGA 7119405 Query 170133 TCAGGGATCTTTCTCAGACGGAATGCCTCTAGGTATCTCAGGTACATTTAACTTCATGTT 170192 ||| ||| ||| || || || ||||||||||| || || ||||| || ||||||||| | Sbjct 7119406 TCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGAT 7119465 Query 170193 CGTATTCCAAGCAGAGCACAACATTCTTATGCACCCATTCCATATGGCAGGGGTTGCTGG 170252 |||||||| || |||||||||| |||||||||||||| || ||| ||| || ||||| Sbjct 7119466 TGTATTCCAGGCTGAGCACAACAACCTTATGCACCCATTTCACATGTTAGGTGTAGCTGG 7119525 Query 170253 TATGTTCGGAGGAGCACTCTTCTCAGCAATGCACGGTTCACTTGTAACATCTTCTCTAAT 170312 | | ||||| || | || ||| || ||||| ||||| | ||||| ||| | | || Sbjct 7119526 TGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTGAT 7119585 Query 170313 CAGAGAGACAACAGATAACGAGTCACAGAACTATGGATACAAATTCGGACAAGAAGAAGA 170372 ||| || || ||||| || || || || | || ||| ||| | | |||| Sbjct 7119586 CAGGGAAACCACAGAAAATGAATCTGCTAAAGAAGGTCACAGGTTCAGTC------AAGA 7119639 Query 170373 AACATACAACATTGTTGCAGCACATGGATACTTTGGTAGACTTATCTTCCAATATGCTAG 170432 ||| || || || | ||||| ||||| || ||||| || | ||||||| |||| |||| Sbjct 7119640 AACTTATAATATCATAGCAGCTCATGGTTATTTTGGCCGATTGATCTTCC-ATATACTAG 7119698 Query 170433 CTTTAACAATAGTCGTAGTCTTCACTTCTTCCTTGCTACATTCCCTGTAGTATGCATCTG 170492 || |||| | | | | ||||||||||| ||| | | ||| |||| | ||||| Sbjct 7119699 TTTCAACAGCTCCCATCAT-TACACTTCTTCCTAGCTGCCTGGCCTATAGTTCGTATCTG 7119757 Query 170493 GTTAACTTCAATGGGTATTTGCACAATGGCATTTAACCTTAATGGATTTAACTTCAACCA 170552 || ||| | | ||||| |||| ||||| || ||||| || || || || |||||||| Sbjct 7119758 CTTCACTCCTTTAGGTATCAGCACTATGGCTTTCAACCTAAACGGTTTCAATTTCAACCA 7119817 Query 170553 GTCAATCGTAGATGGATCTGGTAAAGTAGTTCCTACATGGGCAGACGTTCTTAACAGAGC 170612 || | || ||| | || ||| || ||| |||| || | | ||| | || Sbjct 7119818 ATCTGTAGTTGATAGCCAAGGCTGTGTAATTAATACCTGGGTTGATATGATCAACCGTGC 7119877 Query 170613 AAACCTAGGTATGGAAGTAATGCATGAGCGTAATGCACACAACTTCCCACTTGAC 170667 ||||| ||||||||||| |||| ||| |||||||| || |||||||| || ||| Sbjct 7119878 TAACCTTGGTATGGAAGTTATGCGTGAACGTAATGCTCATAACTTCCCTCTAGAC 7119932 >seq6 Length=25289714 Score = 161 bits (178), Expect = 1e-34 Identities = 169/222 (76%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 170017 TACATGGGTAGACAGTGGGAACTATCATACCGTTTAGGTATGCGTCCTTGGATCTGTGTA 170076 ||||||||| | |||||||||| | |||| | |||||||| | |||||| ||| Sbjct 6246910 TACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGACATTGGATTGCTGTT 6246969 Query 170077 GCATATTCTGCTCCAGTGTCAGCAGCATTCGCTGTATTCTTAGTGTATCCTTTCGGTCAG 170136 |||||| | |||| || |||| || |||||| ||||| | || || ||||||| Sbjct 6246970 GCATATCCAACTCCTGTTGCAGCTGCTACCGCTGTTTTCTTGATCTACCCAATCGGTCAA 6247029 Query 170137 GGATCTTTCTCAGACGGAATGCCTCTAGGTATCTCAGGTACATTTAACTTCATGTTCGTA 170196 ||| ||| || || || ||||||||||| || || ||||| || ||||||||| | ||| Sbjct 6247030 GGAAGTTTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTA 6247089 Query 170197 TTCCAAGCAGAGCACAACATTCTTATGCACCCATTCCATATG 170238 ||||| || ||||| ||||| |||||||||||||| || ||| Sbjct 6247090 TTCCAGGCTGAGCAGAACATCCTTATGCACCCATTTCACATG 6247131 >seq2 Length=18500646 Score = 111 bits (122), Expect = 2e-19 Identities = 151/207 (73%), Gaps = 3/207 (1%) Strand=Plus/Minus Query 170347 GGATACAAATTCGGACAAGAAGAAGAAACATACAACATTGTTGCAGCACATGGATACTTT 170406 || ||||||||||| ||||| |||||||| || || || || || || ||||| || ||| Sbjct 3034145 GGTTACAAATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGC-GCTCATGGTTATTTT 3034087 Query 170407 GGTAGACTTATCTTCCAATATGCTAGCTTTAACAATAGTCGTAGTCTTCACTTCTTCCTT 170466 || || | |||||||||||||||| || ||||| || | | ||||||||||| Sbjct 3034086 GGCCGATTGATCTTCCAATATGCTAATTTCAACAACTCTCATCTGTTACACTTCTTCCTA 3034027 Query 170467 GCTACATTCCCTGTAGTATGCATCTGGTTAACTTCAATGGGTATTTGCACAATGGCATTT 170526 | | | | |||||||| ||||||||| ||| | | ||||| || ||||| ||| Sbjct 3034026 GTTGCTTGGCCTGTAGTGGGCATCTGGTCCACTGCTTTAGGTATCAGCGATATGGC-TTT 3033968 Query 170527 AACCTTAATGGATTT-AACTTCAACCA 170552 | |||| ||||| || ||| |||| Sbjct 3033967 CAATTTAAACGATTTCAATTTCGACCA 3033941 >seq3 Length=24928530 Score = 84.2 bits (92), Expect = 3e-11 Identities = 122/171 (71%), Gaps = 1/171 (1%) Strand=Plus/Plus Query 169816 GACATCGATGGAATCAGAGAACCTGTAGCAGGTTCATTCATGTATGGTAACAACATCATC 169875 || || ||||| | | |||||||| | || || | | | ||||| |||||||| ||| Sbjct 18510401 GATATTGATGGTTTTCGTGAACCTGTTTCTGGATCTTACTT-TATGGAAACAACATTATC 18510459 Query 169876 TCTGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTCTCCACTTCTATCCTATTTGGGAA 169935 || ||| || |||| |||| || |||||||||||| | | || ||||||||| Sbjct 18510460 TCAAGTGTCATTATTCCTACTTCTGCAGCTATCGGTCTCCACGTTTGCCCAATTTGGGAA 18510519 Query 169936 GCAGCAACTCTAGATGAGTGGTTGTATAACGGTGGTCCTTATCAATTAGTT 169986 ||| || | | ||||| ||||| || | | || |||| |||||| || || Sbjct 18510520 GCATCACCCATTGATGAATGGTTATAAACCAGTAGTCCATATCAACTAATT 18510570 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582729710998400