Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sesamum_20indicum_20[refseq_20GCF_5F000512975.1_202014-01-06] 16,236 sequences; 275,059,498 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq13 127 2e-24 seq9 89.7 6e-13 >seq13 Length=5050363 Score = 127 bits (140), Expect = 2e-24 Identities = 538/844 (64%), Gaps = 7/844 (1%) Strand=Plus/Minus Query 18670 TTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACAT 18729 || |||||||| |||| || || |||||||| || ||||| || | || || || Sbjct 3176510 TTCTGATATTCCCCAACCCTCTTCTCAAAGAAGTTTGTTTTCCCTTGCAAACTAATCAAT 3176451 Query 18730 TCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATAGT 18789 ||||| ||||||||||||| | |||| || | ||| | || || | | Sbjct 3176450 TCCATCCAATCAAATGGATTCTGCACATGGTACAACTTTCCATAGCCCAAAGCATTCAAC 3176391 Query 18790 AGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAAT 18849 |||||||| || ||||||| ||| || | |||||| ||| | |||||| || | | Sbjct 3176390 AGTCTATCAGCCACAAATTCAATGTACTGGCTCATCAAATCTCCATTCATCCCCACCAGC 3176331 Query 18850 TTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATATAATA 18909 ||| || ||||| | ||| || |||||||| ||||| || | | || Sbjct 3176330 GCGCAAGGCAGCGCATCACACACAAACTCCCTCTCTATATTCACTGCGTCCGCCACTATT 3176271 Query 18910 GATACAACTCTATCTTCATT-AGGAGGGTATAGAAGATGTTTAAACATCAAACATGCAAA 18968 | ||| | || ||| | || | | || | | || | || || ||||| Sbjct 3176270 CCTTTCACTTTCTCCTCACTCAGCTTCATTTTCAACAAACTGTAA-AGCAGGCACGCAAA 3176212 Query 18969 ATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCAT 19028 ||||||||| | || || |||| || |||||||| || || || || || ||||| Sbjct 3176211 ATCACAATGCAAACCTTCATCTCGCGAAATTAATTCATTGGAGAAAGTCAAGCCCGGCAT 3176152 Query 19029 CAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCA-GAAAAGAATATACCTT 19087 || || | ||||| ||||| ||||| | ||| | | ||| || || ||||| || | Sbjct 3176151 CATCCCGCGCTTTTTCAACCAAAATATGGC-GCAGAAGCTCCCCGAGAAAAATATCCCCT 3176093 Query 19088 CTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATCCATT 19147 | || ||||| || |||| | || || | | ||| || |||||| Sbjct 3176092 CAACACAAGCAAAGGCGACTAACCGCTCAGCAAAG---GATTCAGAGCCATCAATCCAGC 3176036 Query 19148 TCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAGAT 19207 || ||||| | |||||||||| || || || | ||||| || | || || | Sbjct 3176035 GCATGGCCCACTTGGCCTTCTTTTCCACGCAAGGAACGGTCTCAATTGCGCGGAAGAGGT 3175976 Query 19208 ACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAAT 19267 | ||| | | ||||| | || | || | || | ||||||||| || |||| Sbjct 3175975 GGTTTTTCTCGGCCGAGTCTTTGATGTAAGACTCAAGCAGAAGACTGTACATCTCGGAAT 3175916 Query 19268 GAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTT 19327 |||| || || || || || || || ||||| || | || || | ||||| || | Sbjct 3175915 GAATGTTCTCAATGGCAATTTGGAAGCCGTAGAAGGCACGGGCCTCGGAGATCTGGACCT 3175856 Query 19328 CACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATG 19387 | | || | | | | | |||||| ||| || ||||| || ||||| || | Sbjct 3175855 CTTTCATGAAGCGTCCAGCGAGATTTTCCAAAACGATACCATCGGAGGCAGCAAAGAAGG 3175796 Query 19388 CTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGTATTCCAATCATTAATAT 19447 | | || ||||| | ||||| || || || ||||| | | | ||||| | | Sbjct 3175795 CGAGGACGTGTTTGACGAAATGCTTCTCGTCGGAGGTGAGGGCTTCCCAATGGCGGAGGT 3175736 Query 19448 CTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATACATGT 19507 | | ||||||||| ||||| || | ||||| || ||||| ||||||||||| ||||| | Sbjct 3175735 CCTGAGATAAATCAACTTCCTCGGCGGTCCAGAAGGAAGCTTCTGCTTTTTTGTACATCT 3175676 Query 19508 TCCA 19511 ||| Sbjct 3175675 CCCA 3175672 >seq9 Length=12411895 Score = 89.7 bits (98), Expect = 6e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 48359 ACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACC 48418 ||| |||||||| | ||||| || || | || | |||| | |||||| ||||| || Sbjct 8673618 ACCCCCTTGATCCACATATCGAGCTGTGTCATTGAACACTCGAAGCATTGGAACAATGCC 8673559 Query 48419 ATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGA 48478 ||| || | ||||| ||||| |||||||||||| |||| | || ||| | || Sbjct 8673558 ATTGGAAGTTCCATTTGTTCCACGTATATAACTTCCAGTAGCACGGATGTTATGCACAGA 8673499 Query 48479 AATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAAT 48538 | ||| || || || || ||| || | ||||||| || || |||||||| || Sbjct 8673498 GACACCAATCCCTCCAGCTGATTTGCTGATAACAGCACACTCCTTGAGTGTATCATATAT 8673439 Query 48539 TCCTTCTATACTATCATCTATCAT 48562 || || |||||||| ||| |||| Sbjct 8673438 GCCCTCAATACTATCCTCTTTCAT 8673415 Score = 86.0 bits (94), Expect = 7e-12 Identities = 153/221 (69%), Gaps = 2/221 (1%) Strand=Plus/Minus Query 48600 GTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTTA 48659 ||||| | ||| || | || |||||||||||| | |||||| || || |||| | | Sbjct 8673292 GTTCCAGCATTGAAAAGGGTAGGAGATGCATGAGTGAACCATCGCTGAGACAACAGATGA 8673233 Query 48660 TATGTTTCAATAACAGAATCTATATC-CCATTGATGTATACCTATAGATACACGCATTAA 48718 ||||||| ||||| ||||| ||||| | ||| || ||||| | | || | ||| || Sbjct 8673232 TATGTTTTTATAACTGAATCAATATCATCCTTG-TGGATACCAACGGCAACCCTCATCAA 8673174 Query 48719 CATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCAA 48778 ||| | |||||| || ||||||| ||| | | || || || || || |||| | Sbjct 8673173 CATGTGTTGAGGCCTCTCAACAACCTTGCCTTGGACCTTTAACAGGTAAGACCTTTCAAG 8673114 Query 48779 TGTTTTAAAACCAAAATAGTTGTATGAAAAGTCGTTATCAT 48819 ||||| || ||||| || | || |||||| | |||| Sbjct 8673113 GGTTTTGAATCCAAAGTAATCATAGTCAAAGTCTCTGTCAT 8673073 Score = 84.2 bits (92), Expect = 2e-11 Identities = 110/150 (73%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 48105 TCGTATTTAGTATATAACTTCTCAAATTCATC-CCCATACACATTATCTAACCCAGGACA 48163 || || ||||| ||||| |||||||| || ||| ||| || | ||||||||||| Sbjct 8674103 TCATACTTAGTGTATAAAGCTTCAAATTCTTCACCCCAACA-ATCAGCTAACCCAGGAGC 8674045 Query 48164 TTCATTAGGACACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATC 48223 ||||| ||||| | ||||||||| | ||| | || ||||| |||||||| ||| Sbjct 8674044 CTCATTCGGACAAAACAATGACCATTGTCCATTAGATTGAACTCTTTGCATAAATAGATC 8673985 Query 48224 TGGTATCCAAAGAGCTATAAATAAATCCCT 48253 |||| ||||||||| ||||| ||| || Sbjct 8673984 AGGTACCCAAAGAGCATAAAATAGATCTCT 8673955 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561994720019040