Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sesamum_20indicum_20[refseq_20GCF_5F000512975.1_202014-01-06] 16,236 sequences; 275,059,498 total letters Query= NC_016658.1 Length=47741 Score E Sequences producing significant alignments: (Bits) Value seq16236 576 4e-160 seq8 279 2e-70 seq6 165 2e-36 seq2 120 9e-23 >seq16236 Length=153324 Score = 576 bits (638), Expect = 4e-160 Identities = 726/992 (73%), Gaps = 10/992 (1%) Strand=Plus/Plus Query 5191 AGCTGCTAGATCAAGTGGGAAGTTGTGAGCATTTCGTTCGTGCATTACTTCCATACCAAG 5250 ||| ||||| || || |||||||| |||||||| ||||| ||||| |||||||||||||| Sbjct 407 AGCAGCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAG 466 Query 5251 GTTGGCACGGTTCAGGACATCTGCCCAAGTGGGAACGATTCTACCGC-TAGAGT--CAAC 5307 ||| |||||||| | || ||| |||||||| || || || || | || | |||| Sbjct 467 GTTAGCACGGTTGATGATATCAGCCCAAGTATTAA---TTACACGGCCTTGACTATCAAC 523 Query 5308 GACTGACTGATTGAAGTTAAAGCCGTTAAGATTAAAAGCCATAGTGGAGATTCCCATAGA 5367 || || || ||||| || || ||||| || || |||||||||||| ||| || | || Sbjct 524 TACAGATTGGTTGAAATTGAAACCGTTTAGGTTGAAAGCCATAGTGCTGATACCTAAAGC 583 Query 5368 GGTAAGCCATATGCAAACGACGGGCCAAGTAGCCAGGAAGAAATGTAAACTACGGCTATT 5427 || | ||| || | || || ||||||| ||| |||||||| ||||| ||| || Sbjct 584 AGTGAACCAGATACCCACTACAGGCCAAGCAGCTAGGAAGAAGTGTAACGAACGAGAGTT 643 Query 5428 GTTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTT 5487 ||| || |||||||| |||||||| | || ||||| || |||||||| || || || || Sbjct 644 GTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCGGCTACGATATT 703 Query 5488 ATACGTTTCTTCCTCTTGGCCGAATTTATATCCATAGTTCTGAGAAGTAAGCCCAGTTGT 5547 ||| |||||||||||||| |||||| | || || | || ||| | | || || Sbjct 704 ATAAGTTTCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGT 763 Query 5548 TTCACGAATGAGCGAAGAAGTAACAAGACTTCCATGCATAGCAGCGAACAAAGCTCCACC 5607 ||| | || | |||||| || | |||||||||||| ||| | | || || Sbjct 764 TTCCCTGATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCGCC 823 Query 5608 GAATACCCCAGCAACACCGAGCATGTGGAACGGATGCATAAGGATATTGTGTTCTGCCTG 5667 |||||| ||||| || || | |||||| || || ||||||||||| ||||| || ||||| Sbjct 824 GAATACACCAGCTACGCCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTG 883 Query 5668 GAATACGAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATACCATCACTGAAACT 5727 |||||| | ||| ||||| ||||||||||| || || ||||||||||||||| ||||| Sbjct 884 GAATACAATCATGAAGTTGAAAGTACCAGAAATTCCTAGAGGCATACCATCAGAAAAACT 943 Query 5728 TCCCTGTCCGAAAGGGTATACTAAAAATACTGAGTAGGCTGCGGCAACCGGTGCTGAATA 5787 ||| || |||| ||||| | || || || | | || || ||||| || |||||||| Sbjct 944 TCCTTGACCGATTGGGTAGATCAAGAAAACAGCGGTAGCAGCTGCAACAGGAGCTGAATA 1003 Query 5788 TGCTACGCAAATCCATGGTCGCATTCCTAATCTGTAACTAAGTTCCCATTGGCGTCCCAA 5847 ||| || |||||| |||||||| || | | | ||||||||||||| | || |||| Sbjct 1004 TGCAACAGCAATCCAAGGTCGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCAT 1063 Query 5848 GTAAGCTGCGATACCAATAAGGAAGTGGAAGACGACGAGTTGGTATGGTCCTCCATTGTA 5907 |||| || | ||||| | |||||| | || | |||| || || || || ||||| Sbjct 1064 GTAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCACCGTTGTA 1123 Query 5908 AAGCCATTCATCGA--GATTGGCTGCTTCCCAGATGGGATAGAAGTGTAACCCAATTGCG 5965 | ||||||||| | ||| ||||||||||| || || || ||||| || || || || Sbjct 1124 TAACCATTCATCAACGGAT--GCTGCTTCCCAAATTGGGTAAAAGTGCAAACCGATAGCT 1181 Query 5966 TTGGAGCTGGGTACAACGGCTCCTGATATGATGTTGTTTCCATAGAGTAGAGATCCTGCG 6025 || | || | || ||| ||||| || || |||||||| || |||| |||||| | Sbjct 1182 GCAGAAGTAGGAATAATGGCACCTGAGATAATATTGTTTCCGTAAAGTAAAGATCCAGAA 1241 Query 6026 ACGGGTTCACGTATGCCGTCGATGTCGACTGGGGGTGCAGCTACGAATGCTAATATAAAT 6085 || |||||||| || || || || || ||||| || ||||| | ||| || | |||||| Sbjct 1242 ACAGGTTCACGAATACCATCAATATCTACTGGAGGGGCAGCAATGAAGGCAATAATAAAT 1301 Query 6086 GCAGTAGTTGCGGTTAAGAGTGCGGGTATCATTAAGACACCAAACCACCCCACATAGAGG 6145 ||| ||||||||| || | | || ||||| || ||||||||||| || | || || Sbjct 1302 ACAGAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCAATGTAAAGA 1361 Query 6146 CGGTTGTTGGTGCTAGTAACCCAGTCACAGAA 6177 ||||| | |||||| || | ||||| |||||| Sbjct 1362 CGGTTTTCGGTGCTGGTTATCCAGTTACAGAA 1393 >seq8 Length=21523998 Score = 279 bits (308), Expect = 2e-70 Identities = 431/608 (71%), Gaps = 18/608 (3%) Strand=Plus/Minus Query 5191 AGCTGCTAGATCAAGTGGGAAGTTGTGAGCATTTCGTTCGTGCATTACTTCCATACCAAG 5250 ||| ||||| || || |||||||| |||||||| ||||| |||| |||||||||||||| Sbjct 7119941 AGCAGCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCACGCATAACTTCCATACCAAG 7119882 Query 5251 GTTGGCACGGTTCAGGACATCTGCCCAAGTGGGAACGATTCTACC---GCTAGAGTCAAC 5307 ||| |||||||| | | ||| |||| || || | | || |||| ||||| Sbjct 7119881 GTTAGCACGGTTGATCATATCAACCCAGGTATTAATTACACAGCCTTGGCTA---TCAAC 7119825 Query 5308 GACTGACTGATTGAAGTTAAAGCCGTTAAGATTAAAAGCCATAGTGGAGATTCCCATAGA 5367 || || || ||||| || || ||||| || || |||||||||||| ||| || | || Sbjct 7119824 TACAGATTGGTTGAAATTGAAACCGTTTAGGTTGAAAGCCATAGTGCTGATACCTAAAGG 7119765 Query 5368 GGTAAGCCATATGCAAACGACGGGCCAAGTAGCCAGGAAGAAATGTAAACTACGGCTATT 5427 || | || || | ||| | ||||| | ||| |||||||| ||||| | || | Sbjct 7119764 AGTGAAGCAGATACGAACTATAGGCCAGGCAGCTAGGAAGAAGTGTAATG-ATGGGAGCT 7119706 Query 5428 GTTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTT 5487 ||| || |||| ||| |||||||| | || ||||| || |||||||| || | || || Sbjct 7119705 GTTGAAACTAGTATA-TGGAAGATCAATCGGCCAAAATAACCATGAGCTGCTATGATATT 7119647 Query 5488 ATACGTTTCTTCCTCTTGGCCGAATTTATATCCATAGTTCTGAGAAGTAAGCCCAGTTGT 5547 ||| ||||||| | | ||| | | || | || ||| | | || || Sbjct 7119646 ATAAGTTTCTT------GACTGAACCTGTGACCTTCTTTAGCAGATTCATTTTCTGTGGT 7119593 Query 5548 TTCACGAATGAGCGAAGAAGTAACAAGACTTCCATGCATAGCAGCGAACAAAGCTCCACC 5607 ||| | || | |||||| || | |||||||||||| ||| | | || || Sbjct 7119592 TTCCCTGATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTGAATAGGGAACCGCC 7119533 Query 5608 GAATACCCCAGCAACACCGAGCATGTGGAACGGATGCATAAGGATATTGTGTTCTGCCTG 5667 |||||| ||||| ||||| | |||||| || || ||||||||| | ||||| || ||||| Sbjct 7119532 GAATACACCAGCTACACCTAACATGTGAAATGGGTGCATAAGGTTGTTGTGCTCAGCCTG 7119473 Query 5668 GAATACGAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATACCATCACTGAAACT 5727 |||||| | ||| ||||| ||||||||||| || || ||||||||||||||| ||||| Sbjct 7119472 GAATACAATCATGAAGTTGAAAGTACCAGAAATTCCTAGAGGCATACCATCAGAAAAACT 7119413 Query 5728 TCCCTGTCCGAAAGGGTATACTAA--AAATACTGAGTAGGCTGCGGCAACCGGTGCTGAA 5785 ||| || ||| ||||| | || ||||| || |||| | || ||||| | |||||| Sbjct 7119412 TCCTTGATCGATTGGGTAGATCAAGAAAATAGTG-GTAG-CAGCTGCAACACGAGCTGAA 7119355 Query 5786 TATGCTAC 5793 ||||| || Sbjct 7119354 TATGCAAC 7119347 >seq6 Length=25289714 Score = 165 bits (182), Expect = 2e-36 Identities = 184/246 (75%), Gaps = 0/246 (0%) Strand=Plus/Minus Query 5629 CATGTGGAACGGATGCATAAGGATATTGTGTTCTGCCTGGAATACGAACATAAAGTTAAA 5688 |||||| || || ||||||||||| || || || ||||||||||| | ||| ||||| || Sbjct 6247131 CATGTGAAATGGGTGCATAAGGATGTTCTGCTCAGCCTGGAATACAATCATGAAGTTGAA 6247072 Query 5689 AGTACCAGAGATACCAAGAGGCATACCATCACTGAAACTTCCCTGTCCGAAAGGGTATAC 5748 ||||||||| || || ||||||||||||||| |||||||| || |||| ||||| | Sbjct 6247071 AGTACCAGAAATTCCTAGAGGCATACCATCAGAAAAACTTCCTTGACCGATTGGGTAGAT 6247012 Query 5749 TAAAAATACTGAGTAGGCTGCGGCAACCGGTGCTGAATATGCTACGCAAATCCATGGTCG 5808 || || || | | || || ||||| || | || |||||| || |||||| |||| Sbjct 6247011 CAAGAAAACAGCGGTAGCAGCTGCAACAGGAGTTGGATATGCAACAGCAATCCAATGTCG 6246952 Query 5809 CATTCCTAATCTGTAACTAAGTTCCCATTGGCGTCCCAAGTAAGCTGCGATACCAATAAG 5868 ||| || | | | ||||||||||||| | || |||| |||| || | |||| | | Sbjct 6246951 CATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATGTAACAAGCTACACCATTTAA 6246892 Query 5869 GAAGTG 5874 |||||| Sbjct 6246891 GAAGTG 6246886 >seq2 Length=18500646 Score = 120 bits (132), Expect = 9e-23 Identities = 158/218 (72%), Gaps = 1/218 (0%) Strand=Plus/Plus Query 5303 TCAACGACTGACTGATTGAAGTTAAAGCCGTTAAGATTAAAAGCCATAGTGGAGATTCCC 5362 ||||| || | || | ||| || || |||| | ||| ||||||||| | ||| || Sbjct 3033929 TCAACTACAGGTTGGTCGAAATTGAAATCGTTTAAATTGAAAGCCATATCGCTGATACCT 3033988 Query 5363 ATAGAGGTAAGCCATATGCAAACGACGGGCCAAGTAGCCAGGAAGAAATGTAAACTACGG 5422 | || || ||| |||| || || ||||||| | | |||||||| ||||| | | Sbjct 3033989 AAAGCAGTGGACCAGATGCCCACTACAGGCCAAGCAACTAGGAAGAAGTGTAACAGATGA 3034048 Query 5423 CTATTGTTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACA 5482 ||||| || ||||||| |||||||| | || ||||| || |||||||| || || Sbjct 3034049 GAGTTGTTGAAATTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGC-GCTACG 3034107 Query 5483 ATGTTATACGTTTCTTCCTCTTGGCCGAATTTATATCC 5520 || ||||| |||||||||||||| |||||||| || || Sbjct 3034108 ATATTATAAGTTTCTTCCTCTTGACCGAATTTGTAACC 3034145 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 152620168775496