Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sesamum_20indicum_20[refseq_20GCF_5F000512975.1_202014-01-06] 16,236 sequences; 275,059,498 total letters Query= NC_016659.1 Length=47536 Score E Sequences producing significant alignments: (Bits) Value seq16236 556 4e-154 seq8 264 3e-66 seq6 159 1e-34 seq3 122 3e-23 seq11 84.2 7e-12 >seq16236 Length=153324 Score = 556 bits (616), Expect = 4e-154 Identities = 713/983 (73%), Gaps = 0/983 (0%) Strand=Plus/Plus Query 25453 GCTAAGTCAAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAAGTCG 25512 |||| ||| ||||||||||| || || ||||| ||||||||||||||||| || | || Sbjct 411 GCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTA 470 Query 25513 GCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCAACGACTGAC 25572 |||||||| | || ||||||||||| | || | || | |||||| || || Sbjct 471 GCACGGTTGATGATATCAGCCCAAGTATTAATTACACGGCCTTGACTATCAACTACAGAT 530 Query 25573 TGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATAGCGGTAAGC 25632 || ||||| || || ||||| || || |||||||||||| || || | ||| || | | Sbjct 531 TGGTTGAAATTGAAACCGTTTAGGTTGAAAGCCATAGTGCTGATACCTAAAGCAGTGAAC 590 Query 25633 CATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTACGGCTATTATTAAAG 25692 || || | || ||||||||||| |||||||| ||||| ||| || || || Sbjct 591 CAGATACCCACTACAGGCCAAGCAGCTAGGAAGAAGTGTAACGAACGAGAGTTGTTGAAA 650 Query 25693 CTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACGTC 25752 |||||||| |||||||| | || ||||| || |||||||| || || || ||||| || Sbjct 651 CTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCGGCTACGATATTATAAGTT 710 Query 25753 TCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAGCCCAGTTGTTTCACGA 25812 ||||| ||||| |||||| | || || | || ||||||| | || ||||| | Sbjct 711 TCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTG 770 Query 25813 ATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAATACC 25872 || | ||||| || | || ||||||||| ||||| | || |||||||| Sbjct 771 ATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCGCCGAATACA 830 Query 25873 CCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCTGCCTGAAAGACA 25932 || || || || | ||| || || || ||||||||||| ||||| || ||||| || ||| Sbjct 831 CCAGCTACGCCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACA 890 Query 25933 AACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAACTCCCTTGT 25992 | ||| || |||||||| || ||||| || ||||||||||||||||| ||||| ||||| Sbjct 891 ATCATGAAGTTGAAAGTACCAGAAATTCCTAGAGGCATACCATCAGAAAAACTTCCTTGA 950 Query 25993 CCAAAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCTGAATAAGCTACA 26052 || | ||||||| ||||| ||||| || ||||||||||| |||||||| || ||| Sbjct 951 CCGATTGGGTAGATCAAGAAAACAGCGGTAGCAGCTGCAACAGGAGCTGAATATGCAACA 1010 Query 26053 CATATCCACGGCCTCATGCCTAGTCTATAACTAAGTTCCCATTGTCGTCCCAAGTAAGCT 26112 ||||| || | ||| || || | ||||||||||||| | || |||| |||| Sbjct 1011 GCAATCCAAGGTCGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATGTAACAA 1070 Query 26113 GAGATGCCGATGAGAAAGTGGAACACAATAAGTTGATATGGTCCACCGTTATACAACCAC 26172 | | || | | ||||| | ||||| |||| ||| || |||||||| || ||||| Sbjct 1071 GCTACACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCACCGTTGTATAACCAT 1130 Query 26173 TCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTAGATGAC 26232 || || | || ||| |||||||| |||||||| ||||| | |||||| || ||| | Sbjct 1131 TCATCAACGGATGCTGCTTCCCAAATTGGGTAAAAGTGCAAACCGATAGCTGCAGAAGTA 1190 Query 26233 GGGACGATTGCCCCTGAGATGATGTTGTTTCCATAGAGTAATGCTCCTGAGACAGGCTCA 26292 || | || || |||||||| || |||||||| || ||||| | ||| || ||||| ||| Sbjct 1191 GGAATAATGGCACCTGAGATAATATTGTTTCCGTAAAGTAAAGATCCAGAAACAGGTTCA 1250 Query 26293 CGAATACCATCTATATCCACGGGAGGCGCAGCAACAAATGCAATTAAAAATGCTGTCACT 26352 ||||||||||| ||||| || ||||| ||||||| || ||||| | |||| | | | Sbjct 1251 CGAATACCATCAATATCTACTGGAGGGGCAGCAATGAAGGCAATAATAAATACAGAAGTT 1310 Query 26353 GCTGTTAAAAGTGCAGGGATCATTAGTACCCCAAACCACCCCACATAGAGGCGGTTGTTT 26412 || || || | | ||||||||| | || |||||||| || | || || ||||| | Sbjct 1311 GCGGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCAATGTAAAGACGGTTTTCG 1370 Query 26413 GTACTTGTAACCCAGTCACATAA 26435 || || || | ||||| ||| || Sbjct 1371 GTGCTGGTTATCCAGTTACAGAA 1393 >seq8 Length=21523998 Score = 264 bits (292), Expect = 3e-66 Identities = 420/600 (70%), Gaps = 8/600 (1%) Strand=Plus/Minus Query 25453 GCTAAGTCAAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAAGTCG 25512 |||| ||| ||||||||||| || || ||||| ||| ||||||||||||| || | || Sbjct 7119937 GCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCACGCATAACTTCCATACCAAGGTTA 7119878 Query 25513 GCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCAACGACTGAC 25572 |||||||| | || ||| |||| || | || | || | | |||||| || || Sbjct 7119877 GCACGGTTGATCATATCAACCCAGGTATTAATTACACAGCCTTGGCTATCAACTACAGAT 7119818 Query 25573 TGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATAGCGGTAAGC 25632 || ||||| || || ||||| || || |||||||||||| || || | || || | Sbjct 7119817 TGGTTGAAATTGAAACCGTTTAGGTTGAAAGCCATAGTGCTGATACCTAAAGGAGTGAAG 7119758 Query 25633 CATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTACGGCTATTATTAAAG 25692 || || | | | ||||| ||||| |||||||| ||||| | || | || || Sbjct 7119757 CAGATACGAACTATAGGCCAGGCAGCTAGGAAGAAGTGTAATG-ATGGGAGCTGTTGAAA 7119699 Query 25693 CTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACGTC 25752 |||| ||| |||||||| | || ||||| || |||||||| || | || ||||| || Sbjct 7119698 CTAGTATA-TGGAAGATCAATCGGCCAAAATAACCATGAGCTGCTATGATATTATAAGT- 7119641 Query 25753 TCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAGCCCAGTTGTTTCACGA 25812 |||||| | ||| | | || | || ||||||| | || ||||| | Sbjct 7119640 -----TTCTTGACTGAACCTGTGACCTTCTTTAGCAGATTCATTTTCTGTGGTTTCCCTG 7119586 Query 25813 ATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAATACC 25872 || | ||||| || | || ||||||||| ||||| | || |||||||| Sbjct 7119585 ATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTGAATAGGGAACCGCCGAATACA 7119526 Query 25873 CCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCTGCCTGAAAGACA 25932 || || ||||| | ||| || || || ||||||||| | ||||| || ||||| || ||| Sbjct 7119525 CCAGCTACACCTAACATGTGAAATGGGTGCATAAGGTTGTTGTGCTCAGCCTGGAATACA 7119466 Query 25933 AACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAACTCCCTTGT 25992 | ||| || |||||||| || ||||| || ||||||||||||||||| ||||| ||||| Sbjct 7119465 ATCATGAAGTTGAAAGTACCAGAAATTCCTAGAGGCATACCATCAGAAAAACTTCCTTGA 7119406 Query 25993 CCAAAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCTGAATAAGCTACA 26052 | | ||||||| ||||| | || || ||||||||| | |||||||| || ||| Sbjct 7119405 TCGATTGGGTAGATCAAGAAAATAGTGGTAGCAGCTGCAACACGAGCTGAATATGCAACA 7119346 >seq6 Length=25289714 Score = 159 bits (176), Expect = 1e-34 Identities = 169/223 (76%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 25887 CATATGGAACGGATGCATAAGGATATTGTGTTCTGCCTGAAAGACAAACATAAAATTGAA 25946 ||| || || || ||||||||||| || || || ||||| || |||| ||| || ||||| Sbjct 6247131 CATGTGAAATGGGTGCATAAGGATGTTCTGCTCAGCCTGGAATACAATCATGAAGTTGAA 6247072 Query 25947 AGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGGTAGAC 26006 ||| || ||||| || ||||||||||||||||| ||||| ||||| || | ||||||| Sbjct 6247071 AGTACCAGAAATTCCTAGAGGCATACCATCAGAAAAACTTCCTTGACCGATTGGGTAGAT 6247012 Query 26007 TAAGAATACAGCAAATGCTGCTGCAACAGGGGCTGAATAAGCTACACATATCCACGGCCT 26066 ||||| ||||| || ||||||||||| | || ||| || ||| ||||| | | Sbjct 6247011 CAAGAAAACAGCGGTAGCAGCTGCAACAGGAGTTGGATATGCAACAGCAATCCAATGTCG 6246952 Query 26067 CATGCCTAGTCTATAACTAAGTTCCCATTGTCGTCCCAAGTAA 26109 ||| || || | ||||||||||||| | || |||| |||| Sbjct 6246951 CATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATGTAA 6246909 >seq3 Length=24928530 Score = 122 bits (134), Expect = 3e-23 Identities = 152/207 (73%), Gaps = 1/207 (0%) Strand=Plus/Minus Query 26137 ACAATAAGTTGATATGGTCCACCGTTATACAACCACTCGTCGAGGGTTGCAGCTTCCCAG 26196 ||||| ||||||||||| | || | | || ||||| || || | || || |||||||| Sbjct 18510572 ACAATTAGTTGATATGGACTACTGGTTTATAACCATTCATCAATGGGTGATGCTTCCCAA 18510513 Query 26197 ATTGGGTAGAAGTGAAGACCGATTGCGTTAGATGACGGGACGATTGCCCCTGAGATGATG 26256 |||||| | | ||| |||||||| || ||| | || | || | | |||||| ||| Sbjct 18510512 ATTGGGCAAACGTGGAGACCGATAGCTGCAGAAGTAGGAATAATGACACTTGAGATAATG 18510453 Query 26257 TTGTTTCCATAGAGTAATGCTCCTGAGACAGGCTCACGAATACCATCTATATCCACGGGA 26316 ||||||||||| ||||| | ||| || ||||| ||||||| |||||| ||||| | | Sbjct 18510452 TTGTTTCCATAAAGTAA-GATCCAGAAACAGGTTCACGAAAACCATCAATATCTCTTGTA 18510394 Query 26317 GGCGCAGCAACAAATGCAATTAAAAAT 26343 | ||| |||| || | ||| | |||| Sbjct 18510393 GAAGCACCAACGAAGGTAATAATAAAT 18510367 >seq11 Length=15446199 Score = 84.2 bits (92), Expect = 7e-12 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 26258 TGTTTCCATAGAGTAATGCTCCTGAGACAGGCTCACGAATACCATCTATATCCACGGGAG 26317 ||||| | || ||||| | ||| || | ||| |||||||||||||| ||||| || |||| Sbjct 4695761 TGTTTTCGTAAAGTAAAGATCCAGAAAAAGGTTCACGAATACCATCAATATCTACTGGAG 4695702 Query 26318 GCGCAGCAACAAATGCAATTAAAAATGCTGTCACTGCTGTTAAAAGTGCAGGGATCATTA 26377 | ||||||| || ||||| | |||| | | ||| || || | | ||||||||| | Sbjct 4695701 GGGCAGCAATGAAGGCAATAATAAATACAGAAGTTGCGGTCAATAAGGTAGGGATCATCA 4695642 Query 26378 GTACCCCAAACCACCC 26393 | |||||||| || Sbjct 4695641 AAATACCAAACCATCC 4695626 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151964295253936