Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sesamum_20indicum_20[refseq_20GCF_5F000512975.1_202014-01-06] 16,236 sequences; 275,059,498 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq13 86.0 7e-12 >seq13 Length=5050363 Score = 86.0 bits (94), Expect = 7e-12 Identities = 292/450 (65%), Gaps = 5/450 (1%) Strand=Plus/Minus Query 37176 CATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAAT 37235 || |||||||||||||| ||||||||||||| || |||||||| || || || || Sbjct 3176219 CACGCAAAATCACAATGCAAACCTTCATCTCGCGAAATTAATTCATTGGAGAAAGTCAAG 3176160 Query 37236 CCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGAT-CCAGAAAAGAA 37294 || ||||| | || | ||||| | ||||||||| || ||| ||| | || || || || Sbjct 3176159 CCCGGCATCATCCCGCGCTTTTTCAACCAAAATATGGC-GCAGAAGCTCCCCGAGAAAAA 3176101 Query 37295 AATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAACTATAATCAGA 37354 || || ||||| ||||| || || | || | | |||| || | | || Sbjct 3176100 TATCCCCTCAACACAAGCAAAGGCGACTAACCGCTCAGC-AAAG--GATTCAGAGCCATC 3176044 Query 37355 AATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTTTCAATTGCTTT 37414 |||||| | | ||| | ||||| || || || || || |||||||| Sbjct 3176043 AATCCAGCGCATGGCCCACTTGGCCTTCTTTTCCACGCAAGGAACGGTCTCAATTGCGCG 3175984 Query 37415 TAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAGTAAACTATACAT 37474 ||||| |||||| || | ||| | || |||| |||| || | ||| ||||| Sbjct 3175983 GAAGAGGTGGTTTTTCTCGGCCGAGTCTTTGATGTAAGACTCAAGCAGAAGACTGTACAT 3175924 Query 37475 TTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTCAGATAA 37534 || || ||||| || ||||| || || || || || || || | || || || | Sbjct 3175923 CTCGGAATGAATGTTCTCAATGGCAATTTGGAAGCCGTAGAAGGCACGGGCCTCGGAGAT 3175864 Query 37535 TTGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCATCACTAGCTGC 37594 || || || || | || | ||| | ||||| ||| || ||||| || || Sbjct 3175863 CTGGACCTCTTTCATGAAGCGTCCAGCGAGATTTTCCAAAACGATACCATCGGAGGCAGC 3175804 Query 37595 AAAGAAAGCAAGAACATATTTTATAAAATG 37624 |||||| || || || | ||| | ||||| Sbjct 3175803 AAAGAAGGCGAGGACGTGTTTGACGAAATG 3175774 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592196589305440