Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sesamum_20indicum_20[refseq_20GCF_5F000512975.1_202014-01-06] 16,236 sequences; 275,059,498 total letters Query= NC_019443.1 Length=172879 Score E Sequences producing significant alignments: (Bits) Value seq16236 628 3e-175 seq8 360 2e-94 seq6 163 3e-35 seq2 149 7e-31 seq3 96.9 4e-15 >seq16236 Length=153324 Score = 628 bits (696), Expect = 3e-175 Identities = 709/948 (75%), Gaps = 6/948 (1%) Strand=Plus/Minus Query 162541 GGTTGGTTCGGTGTCTTGATGATCCCTTGCTTGCTCGCAGCAGCAACTTGCTTCATCATT 162600 || ||||| ||||| |||||||||||| ||| | | ||| | || || || ||| Sbjct 1351 GGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCAACTTCTGTATTTATTATT 1292 Query 162601 GCATTCATTGCAGCACCTCCAGTTGATATCGATGGTATCAGAGAACCTGTTGCAGGTTCA 162660 || |||||||| || |||||||| ||||| |||||||| | ||||||||| | || || Sbjct 1291 GCCTTCATTGCTGCCCCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCT 1232 Query 162661 CTTCTCTATGGTAACAACATCATCTCTGGTGCTGTCGTTCCTAGTTCAAATGCTATTGGT 162720 | || || || ||||| || ||||| ||||| | |||||| ||| ||||| ||| Sbjct 1231 TTACTTTACGGAAACAATATTATCTCAGGTGCCATTATTCCTACTTCTGCAGCTATCGGT 1172 Query 162721 CTTCACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGTTGTATAATGGTGGA 162780 | ||||| || || || |||||||||||| | ||||||| ||||| || || ||||| Sbjct 1171 TTGCACTTTTACCCAATTTGGGAAGCAGCATCCGTTGATGAATGGTTATACAACGGTGGT 1112 Query 162781 CCTTTCCAACTTGTAGTCTTCCACTTCCTTATCGGAATCACAGCATACTGTGGTCGTCAG 162840 |||| |||| | || | |||||| | | || | | ||| |||||| || Sbjct 1111 CCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAG 1052 Query 162841 TGGGAACTTTCTTACCGCTTAGGTATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCA 162900 ||||||||| || ||| | |||||||| |||||||| ||||||||| || || || Sbjct 1051 TGGGAACTTAGTTTCCGTCTGGGTATGCGACCTTGGATTGCTGTTGCATATTCAGCTCCT 992 Query 162901 GTATCTGCAGCATTCGCTGTGTTCTTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGAC 162960 || | || || |||||| |||||| |||| || |||||||||| ||| ||||| Sbjct 991 GTTGCAGCTGCTACCGCTGTTTTCTTGATCTACCCAATCGGTCAAGGAAGTTTTTCTGAT 932 Query 162961 GCAATGCCTCTTGGTATTTCTGGTACTTTTAACTACATGTTCGTGTTCCAAGCAGAGCAC 163020 | |||||||| || |||||||||||||| |||| |||| | || ||||| || |||||| Sbjct 931 GGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCAC 872 Query 163021 AACATCCTAATGCACCCCTTCCATATGATTGGAGTCGCAGGTGTATTCGGTGGTTCACTC 163080 |||||||| |||||||| || || ||| | || || || ||||||||||| || || || Sbjct 871 AACATCCTTATGCACCCATTTCACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTA 812 Query 163081 TTTAGTGCTATGCACGGTTCTCTTGTTACTTCTTCTCTTATCAGAGAAACTACTGAGCAA 163140 || ||||||||||| ||||| | || |||||| | | ||||| ||||| || || | Sbjct 811 TTCAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAAT 752 Query 163141 GAGTCACAGAACTACGGTTATAAGTTCGGACAAGAAGAAGAGACTTACAACATTGTTGCT 163200 || || || | ||||| | ||||| ||||| ||||| ||||| || || || || Sbjct 751 GAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCC 692 Query 163201 GCTCATGGATACTTTGGTCGCTTGATCTTCCAGTATGCATCTTTCAACAACTCACGTTCA 163260 |||||||| || ||||| || ||||||||||| ||||| |||||||||||| ||||| Sbjct 691 GCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCG 632 Query 163261 CTTCACTTCTTCCTTGCTGCATTCCCTGTGGTCTGCATCTGGTTCACTGCAATGGGTGTG 163320 | ||||||||||| ||||| | ||||| || | |||||||||||||| | ||| | Sbjct 631 TTACACTTCTTCCTAGCTGCTTGGCCTGTAGTGGGTATCTGGTTCACTGCTTTAGGTATC 572 Query 163321 TCAACTATGGCATTCAACCTTAACGGTTTCAACTTCAACCAATCCGTCGTTGA---CGCA 163377 |||||||| |||||||| ||||||||||| ||||||||||| || ||||| | Sbjct 571 AGCACTATGGCTTTCAACCTAAACGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAA 512 Query 163378 GGTGGTAAAGTGATTCCTACTTGGGCAGATATCCTTAACAGAGCAGGACTTGGTATGGAA 163437 || || || ||| ||||||||| |||||| | ||| | || |||||||||||| Sbjct 511 GGCCGT---GTAATTAATACTTGGGCTGATATCATCAACCGTGCTAACCTTGGTATGGAA 455 Query 163438 GTTATGCACGAGCGTAATGCTCACAACTTCCCACTTGACCTTGCTGCT 163485 |||||||| || ||||||||||| |||||||| || ||||| |||||| Sbjct 454 GTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGACCTAGCTGCT 407 >seq8 Length=21523998 Score = 360 bits (398), Expect = 2e-94 Identities = 446/607 (73%), Gaps = 14/607 (2%) Strand=Plus/Plus Query 162882 TGTTGCATACTCTGCACCAGTATCTGCAGCATTCGCTGTGTTCTTGGTCTATCCTTTCGG 162941 ||||||||| || || | || | || || | || | |||||| |||| || ||| Sbjct 7119346 TGTTGCATATTCAGCTCGTGTTGCAGCTGCTACCACTATTTTCTTGATCTACCCAATCGA 7119405 Query 162942 TCAAGGTTCTTTCTCTGACGCAATGCCTCTTGGTATTTCTGGTACTTTTAACTACATGTT 163001 |||||| ||| ||||| | |||||||| || |||||||||||||| |||| |||| | Sbjct 7119406 TCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGAT 7119465 Query 163002 CGTGTTCCAAGCAGAGCACAACATCCTAATGCACCCCTTCCATATGATTGGAGTCGCAGG 163061 || ||||| || |||||||||| ||| |||||||| || || ||| | || || || || Sbjct 7119466 TGTATTCCAGGCTGAGCACAACAACCTTATGCACCCATTTCACATGTTAGGTGTAGCTGG 7119525 Query 163062 TGTATTCGGTGGTTCACTCTTTAGTGCTATGCACGGTTCTCTTGTTACTTCTTCTCTTAT 163121 ||||||||| ||||| || || ||||||||||| ||||| | || |||||| | | || Sbjct 7119526 TGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTGAT 7119585 Query 163122 CAGAGAAACTACTGAGCAAGAGTCACAGAACTACGGTTATAAGTTCGGACAAGAAGAAGA 163181 ||| ||||| || || | || || || | ||| | | |||| | |||||| Sbjct 7119586 CAGGGAAACCACAGAAAATGAATCTGCTAAAGAAGGTCACAGGTTCAGTCAAGAA----- 7119640 Query 163182 GACTTACAACATTGTTGCTGCTCATGGATACTTTGGTCGCTTGATCTTCCAGTATGCATC 163241 ||||| || || | || |||||||| || ||||| || ||||||||||| ||| | Sbjct 7119641 -ACTTATAATATCATAGCAGCTCATGGTTATTTTGGCCGATTGATCTTCCA-TATACTAG 7119698 Query 163242 TTTCAACAACTCACGTTCACTTCACTTCTTCCTTGCTGCATTCCCTGTGGTCTGCATCTG 163301 |||||||| ||| | ||| | ||||||||||| ||||| | ||| | || | ||||| Sbjct 7119699 TTTCAACAGCTC-CCATCATTACACTTCTTCCTAGCTGCCTGGCCTATAGTTCGTATCTG 7119757 Query 163302 GTTCACTGCAATGGGTGTGTCAACTATGGCATTCAACCTTAACGGTTTCAACTTCAACCA 163361 |||||| | | ||| | |||||||| |||||||| ||||||||||| |||||||| Sbjct 7119758 CTTCACTCCTTTAGGTATCAGCACTATGGCTTTCAACCTAAACGGTTTCAATTTCAACCA 7119817 Query 163362 ATCCGTCGTTGA---CGCAGGTGGTAAAGTGATTCCTACTTGGGCAGATATCCTTAACAG 163418 ||| || ||||| | ||| || || ||| ||| |||| ||||| | ||| | Sbjct 7119818 ATCTGTAGTTGATAGCCAAGGCTGT---GTAATTAATACCTGGGTTGATATGATCAACCG 7119874 Query 163419 AGCAGGACTTGGTATGGAAGTTATGCACGAGCGTAATGCTCACAACTTCCCACTTGACCT 163478 || ||||||||||||||||||| || ||||||||||| |||||||| || ||||| Sbjct 7119875 TGCTAACCTTGGTATGGAAGTTATGCGTGAACGTAATGCTCATAACTTCCCTCTAGACCT 7119934 Query 163479 TGCTGCT 163485 |||||| Sbjct 7119935 AGCTGCT 7119941 >seq6 Length=25289714 Score = 163 bits (180), Expect = 3e-35 Identities = 168/220 (76%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 162832 GGTCGTCAGTGGGAACTTTCTTACCGCTTAGGTATGCGTCCTTGGATCTGTGTTGCATAC 162891 |||||| ||||||||||| || ||| | |||||||| | |||||| ||||||||| Sbjct 6246916 GGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGACATTGGATTGCTGTTGCATAT 6246975 Query 162892 TCTGCACCAGTATCTGCAGCATTCGCTGTGTTCTTGGTCTATCCTTTCGGTCAAGGTTCT 162951 | | || || | || || |||||| |||||| |||| || |||||||||| | Sbjct 6246976 CCAACTCCTGTTGCAGCTGCTACCGCTGTTTTCTTGATCTACCCAATCGGTCAAGGAAGT 6247035 Query 162952 TTCTCTGACGCAATGCCTCTTGGTATTTCTGGTACTTTTAACTACATGTTCGTGTTCCAA 163011 || ||||| | |||||||| || |||||||||||||| |||| |||| | || ||||| Sbjct 6247036 TTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAG 6247095 Query 163012 GCAGAGCACAACATCCTAATGCACCCCTTCCATATGATTG 163051 || ||||| |||||||| |||||||| || || ||| ||| Sbjct 6247096 GCTGAGCAGAACATCCTTATGCACCCATTTCACATGTTTG 6247135 >seq2 Length=18500646 Score = 149 bits (164), Expect = 7e-31 Identities = 167/220 (76%), Gaps = 5/220 (2%) Strand=Plus/Minus Query 163156 GGTTATAAGTTCGGACAAGAAGAAGAGACTTACAACATTGTTGCTGCTCATGGATACTTT 163215 ||||| || ||||| ||||| ||||| ||||| || || || || |||||||| || ||| Sbjct 3034145 GGTTACAAATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGC-GCTCATGGTTATTTT 3034087 Query 163216 GGTCGCTTGATCTTCCAGTATGCATCTTTCAACAACTCACGTTCACTTCACTTCTTCCTT 163275 || || ||||||||||| ||||| |||||||||||| | | | ||||||||||| Sbjct 3034086 GGCCGATTGATCTTCCAATATGCTAATTTCAACAACTCTCATCTGTTACACTTCTTCCTA 3034027 Query 163276 GCTGCATTCCCTGTGGTCTGCATCTGGTTCACTGCAATGGGTGTGTCAAC--TATGGCAT 163333 | ||| | ||||| || ||||||||| |||||| | | || ||| | |||||| | Sbjct 3034026 GTTGCTTGGCCTGTAGTGGGCATCTGGTCCACTGCTTTAG--GTATCAGCGATATGGCTT 3033969 Query 163334 TCAACCTTAACGGTTTCAACTTCAACCAATCCGTCGTTGA 163373 |||| | |||| |||||| ||| ||||| | || ||||| Sbjct 3033968 TCAATTTAAACGATTTCAATTTCGACCAACCTGTAGTTGA 3033929 >seq3 Length=24928530 Score = 96.9 bits (106), Expect = 4e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 163031 TGCACCCCTTCCATATGATTGGAGTCGCAGGTGTATTCGGTGGTTCACTCTTTAGTGCTA 163090 |||||| || || ||| | || | || ||||||||||| || || || || |||| || Sbjct 17256211 TGCACCTATTTCACATGTTAGGCATAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGTTA 17256270 Query 163091 TGCACGGTTCTCTTGTTACTTCTTCTCTTATCAGAGAAACTACTGAGCAAGAGTCACAGA 163150 |||| ||||| | || ||||| | ||||| ||||| || || | || | | Sbjct 17256271 TGCATGGTTCCTTGGTAACTTCAAGGTTGATCAGGGAAACCACAGAAAATGAATATGCTA 17256330 Query 163151 ACTACGGTTATAAGTTCGGACAAGAAGAAGAGACTTACAACATTGTTGCTGCTCATGGAT 163210 | | ||||| || ||||| ||||| |||| ||||| || || || | |||||||| | Sbjct 17256331 ATGAAGGTTACAAATTCGGTCAAGAGAAAGAAACTTATAATATCGTAGTAGCTCATGGTT 17256390 Query 163211 ACTTTGGTCGCTTGATCT 163228 | ||||| || ||||||| Sbjct 17256391 ATTTTGGCCGATTGATCT 17256408 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 552972551439840