Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sesamum_20indicum_20[refseq_20GCF_5F000512975.1_202014-01-06] 16,236 sequences; 275,059,498 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq15 136 7e-27 seq13 127 4e-24 >seq15 Length=10047770 Score = 136 bits (150), Expect = 7e-27 Identities = 372/565 (66%), Gaps = 5/565 (1%) Strand=Plus/Plus Query 48121 ATAGAGCATGCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGA 48180 ||| |||| ||| ||||| || | |||||| || || ||||| ||| | ||||||| Sbjct 1769296 ATAAAGCAAGCACGCAAAATCGCAGTGCAAACCCTCATCCCGTGAGATTAATTCGTTGGA 1769355 Query 48181 GAAGCAGAGACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCC 48240 ||| | ||| ||||| | || | || || ||||| || ||||| ||| || Sbjct 1769356 GAAAGTTAAACCCGGCATCAAACCACGCTTCTTCAGCCAAAATATTGCACAGAAGCTTCC 1769415 Query 48241 AGAGAAGAAGATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTT 48300 ||||| || ||||| ||||| || || || | | || || | || ||| | Sbjct 1769416 CGAGAAAAATATGCCTTCCACACAAGCAAATCCGATTAA--TCGTTCGGCAA-AAGTTTC 1769472 Query 48301 CTTGTCTGAGATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTC 48360 | | ||||||| | ||||| | |||||||||| | ||||| | ||||| Sbjct 1769473 AGAGCCATCGATCCAGCGTAAAGCCCATTTAGCCTTCTTCTCCACACATGGGACAGTCTC 1769532 Query 48361 TATGGCCCGGAAGAGCTTCTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAGCTT 48420 || || || || ||| | || ||| | | ||| | ||||| |||| Sbjct 1769533 GATTGCGCGAAAAAGCATGTTCTTCTCGGCCGAATCCTTTATATAGGATTCAAGCAAAAG 1769592 Query 48421 TGCGTACATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGC 48480 |||||||| || || | ||||| || || ||||| ||||| |||||||| | || Sbjct 1769593 ACTATACATCTCGGAATGGATGTTCTCAATGGCAATCTGAAACCCATAGAAGGCACGAGC 1769652 Query 48481 CTCAAACACCTGCACTTCTGTGGAGAATCTCTCCAGCA-GATTCTCATTGACTATCCCAT 48539 ||| | ||||| ||||| | ||| | ||||||| | ||||| || || |||| Sbjct 1769653 CTCGGAGACCTGAACTTCCTTCATGAAGCG-TCCAGCAAGGTTCTCCAAAACAATGCCAT 1769711 Query 48540 CTGAAGCAGCAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAG 48599 | || || || |||||||| || || ||||| | |||||| ||||| ||||| Sbjct 1769712 CAGAGGCGGCGAAGAAGGCGAGAACGTGTTTGATGAAATGCTTCTCGTCAGAAGTGAGGT 1769771 Query 48600 CATTCCAGCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGA 48659 | |||| | | ||||| | || |||||||| ||| |||||||||||||||| Sbjct 1769772 TTTCCCAGTGGCGGAGGTCTTGGGACAAATCCACTTCCTCCGCAGTCCAGAAGGACGCTT 1769831 Query 48660 GTGCTTTTTTGTACATGCCCCATAT 48684 ||||| |||||||| |||| || Sbjct 1769832 CGGCTTTCTTGTACATTTCCCAGAT 1769856 >seq13 Length=5050363 Score = 127 bits (140), Expect = 4e-24 Identities = 185/259 (71%), Gaps = 2/259 (1%) Strand=Plus/Minus Query 48424 GTACATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTC 48483 ||||||||| || || | ||||| || || || ||||| ||||||||||| | |||||| Sbjct 3175929 GTACATCTCGGAATGAATGTTCTCAATGGCAATTTGGAAGCCGTAGAAGGCACGGGCCTC 3175870 Query 48484 AAACACCTGCACTTCTGTGGAGAATCTCTCCAGC-AGATTCTCATTGACTATCCCATCTG 48542 | | ||| || ||| | ||| | |||||| ||||| || || || ||||| | Sbjct 3175869 GGAGATCTGGACCTCTTTCATGAAGCG-TCCAGCGAGATTTTCCAAAACGATACCATCGG 3175811 Query 48543 AAGCAGCAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCAT 48602 | |||||||||||||| ||||| ||||| | |||||| ||||| | |||||| || | Sbjct 3175810 AGGCAGCAAAGAAGGCGAGGACGTGTTTGACGAAATGCTTCTCGTCGGAGGTGAGGGCTT 3175751 Query 48603 TCCAGCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTG 48662 ||| | | ||| | | || ||||| || | ||||||||||| || || Sbjct 3175750 CCCAATGGCGGAGGTCCTGAGATAAATCAACTTCCTCGGCGGTCCAGAAGGAAGCTTCTG 3175691 Query 48663 CTTTTTTGTACATGCCCCA 48681 ||||||||||||| |||| Sbjct 3175690 CTTTTTTGTACATCTCCCA 3175672 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931343745418240