Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sesamum_20indicum_20[refseq_20GCF_5F000512975.1_202014-01-06] 16,236 sequences; 275,059,498 total letters Query= NC_020835.1 Length=47325 Score E Sequences producing significant alignments: (Bits) Value seq16236 563 3e-156 seq8 255 2e-63 seq6 154 4e-33 seq3 132 1e-26 seq11 93.3 1e-14 >seq16236 Length=153324 Score = 563 bits (624), Expect = 3e-156 Identities = 726/995 (73%), Gaps = 10/995 (1%) Strand=Plus/Plus Query 17828 GATTGAAGCTAAATCTAGCGGGAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCC 17887 ||| | ||||| ||||| |||||||||||||||||||| || ||||||||||| | || Sbjct 404 GATAGCAGCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACC 463 Query 17888 AAGGTTAGCTCTGTTGAGTACGTCAGCCCATGTAGGTACGACTTGTCCT---CCAGCTGC 17944 ||||||||| | ||||| | |||||||| ||| | || | ||| | | | | Sbjct 464 AAGGTTAGCACGGTTGATGATATCAGCCCAAGTATTAATTACACGGCCTTGACTATCAAC 523 Query 17945 TACAATGGATTGGTTGAAGTTGAATCCATTGAGATTAAAAGCCATAGTGGAGATTCCCAT 18004 |||| ||||||||||| ||||| || || || || |||||||||||| ||| || | Sbjct 524 TACA---GATTGGTTGAAATTGAAACCGTTTAGGTTGAAAGCCATAGTGCTGATACCTAA 580 Query 18005 AGAGGTAAGCCATATGCAAGTGACGGGCCAAGCAGCCAAGAAGAAATGTAGACTCCTGCT 18064 || || | ||| || | || ||||||||||| | |||||| |||| || | Sbjct 581 AGCAGTGAACCAGATACCCACTACAGGCCAAGCAGCTAGGAAGAAGTGTA-ACGAACGAG 639 Query 18065 A-TTGTTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAA 18123 | ||||| || |||||||| |||||||| | || ||||| || |||||||| || || | Sbjct 640 AGTTGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCGGCTACGA 699 Query 18124 TATTATACGTCTCTTCTTCTTGGCCAAATTTATATCCATAGTTCTGAGACTCAAGCTCAG 18183 ||||||| || ||||| ||||| || ||| | || || | || ||| ||| || | Sbjct 700 TATTATAAGTTTCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTG 759 Query 18184 TCGTTTCTCTAATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTC 18243 | ||||| || || | ||||| || | || ||||||||| ||||| | | Sbjct 760 TGGTTTCCCTGATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTGAATAGGGAGC 819 Query 18244 CACCGAATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCGG 18303 | |||||||| || || || || | ||| || || || ||||||||||| ||||| || | Sbjct 820 CGCCGAATACACCAGCTACGCCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAG 879 Query 18304 CTTGGAATACGAACATGAAATTGAAAGTACCGCTAATACCAAGAGGCATACCATCAGAGA 18363 | |||||||| | |||||| ||||||||||| ||| || ||||||||||||||||| | Sbjct 880 CCTGGAATACAATCATGAAGTTGAAAGTACCAGAAATTCCTAGAGGCATACCATCAGAAA 939 Query 18364 AACTCCCTTGTCCAAAAGGATA-AACGAGAAATACTGAGAAGGCAGCTGCTACTGGTGCG 18422 |||| ||||| || | || || | | ||||| || | | |||||||| || || || Sbjct 940 AACTTCCTTGACCGATTGGGTAGATCAAGAAA-ACAGCGGTAGCAGCTGCAACAGGAGCT 998 Query 18423 GAATAAGCAACACAAATCCACGGGCGCATACCTAGTCTATAACTAAGTTCCCATTGTCGT 18482 ||||| |||||| |||||| || |||||||| || | ||||||||||||| | || Sbjct 999 GAATATGCAACAGCAATCCAAGGTCGCATACCCAGACGGAAACTAAGTTCCCACTCACGA 1058 Query 18483 CCCATGTAAGCTGCGATGCCGATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCG 18542 ||||||||| || | || | | ||||| | ||||| |||| ||| || || ||| Sbjct 1059 CCCATGTAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCACCG 1118 Query 18543 TTATATAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATT 18602 || |||||||| || || | || ||| |||||||| |||||||| ||||| | |||||| Sbjct 1119 TTGTATAACCATTCATCAACGGATGCTGCTTCCCAAATTGGGTAAAAGTGCAAACCGATA 1178 Query 18603 GCGTTAGATGACGGGACGATTGCCCCTGATATGATGTTGTTTCCATAGAGTAAGGCTCCT 18662 || ||| | || | || || ||||| || || |||||||| || ||||| | ||| Sbjct 1179 GCTGCAGAAGTAGGAATAATGGCACCTGAGATAATATTGTTTCCGTAAAGTAAAGATCCA 1238 Query 18663 GAGACAGGCTCACGAATACCATCTATGTCAACGGGAGGAGCAGCAACAAATGCAATCAAA 18722 || ||||| |||||||||||||| || || || ||||| ||||||| || ||||| | | Sbjct 1239 GAAACAGGTTCACGAATACCATCAATATCTACTGGAGGGGCAGCAATGAAGGCAATAATA 1298 Query 18723 AATGCTGTAGCTGCGGTTAAAAGTGCAGGGATCATAAGTACCCCAAACCACCCCACGTAG 18782 ||| | | || |||||| || | | ||||||||| | || |||||||| || | ||| Sbjct 1299 AATACAGAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCAATGTAA 1358 Query 18783 AGGCGGTTGTTTGTACTCGTAACCCAGTCACATAA 18817 || ||||| | || || || | ||||| ||| || Sbjct 1359 AGACGGTTTTCGGTGCTGGTTATCCAGTTACAGAA 1393 >seq8 Length=21523998 Score = 255 bits (282), Expect = 2e-63 Identities = 434/621 (70%), Gaps = 20/621 (3%) Strand=Plus/Minus Query 17828 GATTGAAGCTAAATCTAGCGGGAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCC 17887 ||| | ||||| ||||| |||||||||||||||||||| || |||||||||| | || Sbjct 7119944 GATAGCAGCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCACGCATAACTTCCATACC 7119885 Query 17888 AAGGTTAGCTCTGTTGAGTACGTCAGCCCATGTAGGTACGACTTGTCCT---CCAGCTGC 17944 ||||||||| | ||||| | ||| |||| ||| | || ||| | | | | Sbjct 7119884 AAGGTTAGCACGGTTGATCATATCAACCCAGGTATTAATTACACAGCCTTGGCTATCAAC 7119825 Query 17945 TACAATGGATTGGTTGAAGTTGAATCCATTGAGATTAAAAGCCATAGTGGAGATTCCCAT 18004 |||| ||||||||||| ||||| || || || || |||||||||||| ||| || | Sbjct 7119824 TACA---GATTGGTTGAAATTGAAACCGTTTAGGTTGAAAGCCATAGTGCTGATACCTAA 7119768 Query 18005 AGAGGTAAGCCATATGCAAGTGACGGGCCAAGCAGCCAAGAAGAAATGTAGACTCCTGCT 18064 || || | || || | | | ||||| ||||| | |||||| |||| | || Sbjct 7119767 AGGAGTGAAGCAGATACGAACTATAGGCCAGGCAGCTAGGAAGAAGTGTAA--TGATGGG 7119710 Query 18065 AT-TGTTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAA 18123 | |||| || |||| ||| |||||||| | || ||||| || |||||||| || | | Sbjct 7119709 AGCTGTTGAAACTAGTATA-TGGAAGATCAATCGGCCAAAATAACCATGAGCTGCTATGA 7119651 Query 18124 TATTATACGTCTCTTCTTCTTGGCCAAATTTATATCCATAGTTCTGAGACTCAAGCTCAG 18183 ||||||| || |||||| | || | | || | || ||| ||| || | Sbjct 7119650 TATTATAAGT------TTCTTGACTGAACCTGTGACCTTCTTTAGCAGATTCATTTTCTG 7119597 Query 18184 TCGTTTCTCTAATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTC 18243 | ||||| || || | ||||| || | || ||||||||| ||||| | | Sbjct 7119596 TGGTTTCCCTGATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTGAATAGGGAAC 7119537 Query 18244 CACCGAATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCGG 18303 | |||||||| || || ||||| | ||| || || || ||||||||| | ||||| || | Sbjct 7119536 CGCCGAATACACCAGCTACACCTAACATGTGAAATGGGTGCATAAGGTTGTTGTGCTCAG 7119477 Query 18304 CTTGGAATACGAACATGAAATTGAAAGTACCGCTAATACCAAGAGGCATACCATCAGAGA 18363 | |||||||| | |||||| ||||||||||| ||| || ||||||||||||||||| | Sbjct 7119476 CCTGGAATACAATCATGAAGTTGAAAGTACCAGAAATTCCTAGAGGCATACCATCAGAAA 7119417 Query 18364 AACTCCCTTGTCCAAAAGGATA-AACGAG-AAATACTGAGAAGGCAGCTGCTACTGGTGC 18421 |||| ||||| | | || || | | || ||||| || | |||||||| || | || Sbjct 7119416 AACTTCCTTGATCGATTGGGTAGATCAAGAAAATAGTGGTA--GCAGCTGCAACACGAGC 7119359 Query 18422 GGAATAAGCAACACAAATCCA 18442 ||||| |||||| || ||| Sbjct 7119358 TGAATATGCAACAGGAACCCA 7119338 >seq6 Length=25289714 Score = 154 bits (170), Expect = 4e-33 Identities = 170/224 (76%), Gaps = 2/224 (1%) Strand=Plus/Minus Query 18269 CATATGGAACGGATGCATAAGGATATTGTGTTCGGCTTGGAATACGAACATGAAATTGAA 18328 ||| || || || ||||||||||| || || || || |||||||| | |||||| ||||| Sbjct 6247131 CATGTGAAATGGGTGCATAAGGATGTTCTGCTCAGCCTGGAATACAATCATGAAGTTGAA 6247072 Query 18329 AGTACCGCTAATACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGATAAA- 18387 |||||| ||| || ||||||||||||||||| ||||| ||||| || | || || | Sbjct 6247071 AGTACCAGAAATTCCTAGAGGCATACCATCAGAAAAACTTCCTTGACCGATTGGGTAGAT 6247012 Query 18388 CGAGAAATACTGAGAAGGCAGCTGCTACTGGTGCGGAATAAGCAACACAAATCCACGGGC 18447 | ||||| || | | |||||||| || || | | ||| |||||| |||||| | | Sbjct 6247011 CAAGAAA-ACAGCGGTAGCAGCTGCAACAGGAGTTGGATATGCAACAGCAATCCAATGTC 6246953 Query 18448 GCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCCCATGTAA 18491 ||||||| || | ||||||||||||| | || ||||||||| Sbjct 6246952 GCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATGTAA 6246909 >seq3 Length=24928530 Score = 132 bits (146), Expect = 1e-26 Identities = 197/273 (72%), Gaps = 6/273 (2%) Strand=Plus/Minus Query 18519 ACAATGAGTTGATATGGTCCTCCGTTATATAACCACTCGTCGAGGGTTGCAGCTTCCCAG 18578 ||||| ||||||||||| | | | | |||||||| || || | || || |||||||| Sbjct 18510572 ACAATTAGTTGATATGGACTACTGGTTTATAACCATTCATCAATGGGTGATGCTTCCCAA 18510513 Query 18579 ATTGGGTAGAAGTGAAGACCGATTGCGTTAGATGACGGGACGATTGCCCCTGATATGATG 18638 |||||| | | ||| |||||||| || ||| | || | || | | ||| || ||| Sbjct 18510512 ATTGGGCAAACGTGGAGACCGATAGCTGCAGAAGTAGGAATAATGACACTTGAGATAATG 18510453 Query 18639 TTGTTTCCATAGAGTAAGGCTCCTGAGACAGGCTCACGAATACCATCTATGTCAACGGGA 18698 ||||||||||| ||||| | ||| || ||||| ||||||| |||||| || || | | Sbjct 18510452 TTGTTTCCATAAAGTAA-GATCCAGAAACAGGTTCACGAAAACCATCAATATCTCTTGTA 18510394 Query 18699 GGAGCAGCAACAAATGCAATCAAAAATGCTGTAGCTGCGGT-TAAAAGTGCAGGGATCAT 18757 | |||| |||| || | ||| | |||| | |||||| ||| || ||| | | ||||||| Sbjct 18510393 GAAGCACCAACGAAGGTAATAATAAATACAGTAGCTATGGTCTATAAG-GTA-GGATCAT 18510336 Query 18758 AAGTACCCCAAACCACCCCACGTAGAGGCGGTT 18790 | || ||||| || || | | ||||| ||| Sbjct 18510335 CAAAACACCAAATCATCCAAAG--GAGGCTGTT 18510305 >seq11 Length=15446199 Score = 93.3 bits (102), Expect = 1e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 18640 TGTTTCCATAGAGTAAGGCTCCTGAGACAGGCTCACGAATACCATCTATGTCAACGGGAG 18699 ||||| | || ||||| | ||| || | ||| |||||||||||||| || || || |||| Sbjct 4695761 TGTTTTCGTAAAGTAAAGATCCAGAAAAAGGTTCACGAATACCATCAATATCTACTGGAG 4695702 Query 18700 GAGCAGCAACAAATGCAATCAAAAATGCTGTAGCTGCGGTTAAAAGTGCAGGGATCATAA 18759 | ||||||| || ||||| | |||| | | || |||||| || | | ||||||||| | Sbjct 4695701 GGGCAGCAATGAAGGCAATAATAAATACAGAAGTTGCGGTCAATAAGGTAGGGATCATCA 4695642 Query 18760 GTACCCCAAACCACCC 18775 | |||||||| || Sbjct 4695641 AAATACCAAACCATCC 4695626 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151289225434184