Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sesamum_20indicum_20[refseq_20GCF_5F000512975.1_202014-01-06] 16,236 sequences; 275,059,498 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq15 138 1e-27 seq14 116 4e-21 seq3 116 4e-21 seq2 105 8e-18 seq6 98.7 1e-15 seq9 96.9 4e-15 >seq15 Length=10047770 Score = 138 bits (152), Expect = 1e-27 Identities = 402/614 (65%), Gaps = 9/614 (1%) Strand=Plus/Minus Query 64618 GAACCTATTCTGGCCCCCACCCTAAACAGATT-TACAGTCTTCCCCCTGAAGTATCCACA 64676 |||||| | || ||||||| || || | || | || | |||||| | |||| ||||| Sbjct 1769916 GAACCTCTCCTCGCCCCCAACCCCGACCGCTTCTGCA-TGTTCCCCATCCAGTACCCACA 1769858 Query 64677 ACTCTGGGAACTCTATAAAAAGGCTCAAATGAGCAATTGGACTGCGGAAGAAGTTGATTT 64736 | |||||||| | || || || || || | | ||||||||||| ||||| ||||| Sbjct 1769857 AATCTGGGAAATGTACAAGAAAGCCGAAGCGTCCTTCTGGACTGCGGAGGAAGTGGATTT 1769798 Query 64737 GTCCAAAGATCTTGACGACTGGAAGACCCTGAATGAAAATGAAAAGAAATTCATAAAGTA 64796 |||| |||| || | ||||| | | ||| | | | || ||| | ||||| || | Sbjct 1769797 GTCCCAAGACCTCCGCCACTGGGAAAACCTCACTTCTGACGAGAAGCATTTCATCAAACA 1769738 Query 64797 CATCCTGGCATTCTTTGCTGGGTCCGATGGAATTGTTTTTGAGAATATCAATAACAATTT 64856 | | || || ||||| || | || ||||| |||||||| ||||| | | || Sbjct 1769737 CGTTCTCGCCTTCTTCGCCGCCTCTGATGGCATTGTTTTGGAGAACCTTGCTGGACGCTT 1769678 Query 64857 TGCGGATGAAGTGCAGATAAGCGAAGCGCGCTCATTCTACGCATATC--AATGCCATAAT 64914 | | ||||| ||| | ||| || || | ||||| | | || | |||||| | Sbjct 1769677 CATGAAGGAAGTTCAGGTCTCCGAGGCTCGTGCCTTCTATGGGTTTCAGATTGCCAT--T 1769620 Query 64915 GAAATGGTTCATGGCGAAACATATTCAAAATTGATTGACAAATACATTAAGGATGGATCT 64974 || | | ||| ||| | ||| ||| |||| || || |||||| | Sbjct 1769619 GAGAACATCCATTCCGAGATGTATAGTCTTTTGCTTGAATCCTATATAAAGGATTCGGCC 1769560 Query 64975 GAAAAGAAGCAGTTATTTGAAGCCATCCAAACTGTACCATGTATTGAGAAGAAGGCGAAA 65034 || ||||| | | ||| || ||| | ||||| |||||| | ||||||||||| ||| Sbjct 1769559 GAGAAGAACATGCTTTTTCGCGCAATCGAGACTGTCCCATGTGTGGAGAAGAAGGCTAAA 1769500 Query 65035 TGGGCAATGAAATGGTTTGACACAAAGTCTCGCTCCTTCGCCGAGCGCCTTTTTGCGTTT 65094 ||||| | ||| | || ||| | || ||||| || | | | ||| Sbjct 1769499 TGGGCTTTACGCTGGATCGA---TGGCTCTGAAACTTTTGCCGAACGATTAATCGGATTT 1769443 Query 65095 GCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGCGCTATTTATTGGTTGAAGAAG 65154 || |||||||| || || || ||||| || ||||| || || | |||| |||||||| Sbjct 1769442 GCTTGTGTGGAAGGCATATTTTTCTCGGGAAGCTTCTGTGCAATATTTTGGCTGAAGAAG 1769383 Query 65155 CGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACTTATTTCCCGAGATGAGGGTCTC 65214 || ||| | ||||| || || ||||| || ||| | || || || ||||||||| | Sbjct 1769382 CGTGGTTTGATGCCGGGTTTAACTTTCTCCAACGAATTAATCTCACGGGATGAGGGTTTG 1769323 Query 65215 CACCAGGAGTTTGC 65228 ||| || ||||| Sbjct 1769322 CACTGCGATTTTGC 1769309 >seq14 Length=4882680 Score = 116 bits (128), Expect = 4e-21 Identities = 225/332 (68%), Gaps = 0/332 (0%) Strand=Plus/Plus Query 175315 CCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTC 175374 |||||||| |||||||| | || || || ||||| |||||| || ||| ||||| Sbjct 2614087 CCAGGTACTGGAAAGACATTGCTAGCAAAGGCAATCGCTGGTGAAGCAGGTGTTCCATTT 2614146 Query 175375 ATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTT 175434 || | || | | | ||||| |||||||||||||| || |||||| ||| || Sbjct 2614147 TTCTCGATTTCAGGTTCTGAGTTTGTTGAGATGTTTGTTGGAGTCGGTGCCTCAAGAGTC 2614206 Query 175435 CGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATT 175494 || ||||| || | | ||| |||||| || || ||||| || ||||||| ||| Sbjct 2614207 CGTGATCTTTTCAAGAAGGCCAAGGAAAATGCTCCCTGCATTGTGTTTGTTGATGAAATT 2614266 Query 175495 GATGCGGTGGGCAAGCAACGCAGCGCTGGTGGTATGCCAGCAAATGACGAGAGAGAACAA 175554 ||||| || ||| ||| | | ||||| | || ||||| || || || ||| Sbjct 2614267 GATGCTGTTGGCCGTCAAAGAGGAACTGGTATTGGTGGAGGCAATGATGAAAGGGAGCAA 2614326 Query 175555 ACAATTAATCAACTACTCACCGAGATGGATGGCTTTGACAATGAGACTGGCATTGTGGTT 175614 || | || || || | || || |||||||| ||||| | ||||| || | ||| Sbjct 2614327 ACGCTAAACCAGCTCTTGACAGAAATGGATGGTTTTGAAGGGAATACTGGTATAATTGTT 2614386 Query 175615 ATTGCGGCCACTAATCGCGTGGATATCCTTGA 175646 ||||| || ||||| || | ||||| || || Sbjct 2614387 ATTGCAGCTACTAACCGTGCTGATATTCTCGA 2614418 >seq3 Length=24928530 Score = 116 bits (128), Expect = 4e-21 Identities = 217/316 (69%), Gaps = 2/316 (1%) Strand=Plus/Plus Query 175276 GGTGCCAAGATCCCCCGAGGCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTC 175335 ||||| || ||||| ||| ||| | | ||| ||| ||||| || ||||||||| Sbjct 23876180 GGTGCAAAAATCCCGAAAGGTTGTCTTTTGGTTGGTCCGCCGGGTACTGGGAAGACCCTC 23876239 Query 175336 CTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTCATCCAGTGCTCTGCCGCAAAC 175395 || || ||||| | || ||||| | || || || || || | || || | Sbjct 23876240 CTGGCAAGAGCCGTGGCTGGTGAGGCTGGGGTGCCCTTTTTCTCATGTGCAGCATCAGAG 23876299 Query 175396 TTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCC 175455 ||||||||| ||||||| ||||| || || ||| || | ||| | ||||| | ||| Sbjct 23876300 TTTGTGGAGCTGTTTGTGGGTGTAGGAGCTTCAAGAGTGAGGGATTTGTTTGAGAAGGCC 23876359 Query 175456 C-GCGAAAATCAACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACG 175514 | ||| || || |||||||| |||||||||||||||||||| ||||| | ||| | Sbjct 23876360 AAGTCGAAAGCA-CCTTGTATTGTGTTCATTGATGAGATTGATGCCGTGGGAAGGCAGAG 23876418 Query 175515 CAGCGCTGGTGGTATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCAC 175574 | || ||| | | ||||| |||||||| || || |||||||| || | || Sbjct 23876419 AGGAGCAGGTCTTGGTGGTGGGAATGATGAGAGAGAGCAGACCATTAATCAGCTGTTGAC 23876478 Query 175575 CGAGATGGATGGCTTT 175590 || |||||||| ||| Sbjct 23876479 GGAAATGGATGGATTT 23876494 >seq2 Length=18500646 Score = 105 bits (116), Expect = 8e-18 Identities = 196/282 (70%), Gaps = 12/282 (4%) Strand=Plus/Plus Query 175315 CCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTC 175374 || ||||| ||||||||||| | || | || | || |||||| || || || ||| Sbjct 3971753 CCCGGTACTGGAAAGACCCTTTTGGCAAGGGCAGTGGCTGGTGAAGCAGGGGTACCGTTC 3971812 Query 175375 AT--CCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGG 175432 | || ||||| || || | ||||| ||| ||||||| ||||| || || ||| | Sbjct 3971813 TTTTCCTGTGCT--GCATCAGAGTTTGTAGAGTTGTTTGTAGGTGTTGGAGCTTCAAGAG 3971870 Query 175433 TTCGCGATCTCTTTGAAATCGCCC-GCGAAAATCAACCATGTATTGTCTTCATTGATGAG 175491 | | ||| | ||||| | ||| | ||| | || || ||||| ||||||||||| Sbjct 3971871 TGAGGGATTTGTTTGATAAGGCCAAGTCTAAAGCT-CCTTGCATTGTGTTCATTGATGAA 3971929 Query 175492 ATTGATGCGGTGGGCAAGCAACGCAGCGCTGG---TGGTATGCCAGCAAATGACGAGAGA 175548 |||||||| ||||| | |||| | | || || |||| | | |||||| || ||| Sbjct 3971930 ATTGATGCTGTGGGTAGGCAAAGAGGGGCAGGACTTGGTGGG---GGAAATGATGAAAGA 3971986 Query 175549 GAACAAACAATTAATCAACTACTCACCGAGATGGATGGCTTT 175590 || || || |||||||| || | || || |||||||| ||| Sbjct 3971987 GAGCAGACTATTAATCAGCTCTTGACTGAAATGGATGGATTT 3972028 >seq6 Length=25289714 Score = 98.7 bits (108), Expect = 1e-15 Identities = 230/347 (66%), Gaps = 0/347 (0%) Strand=Plus/Plus Query 175300 CTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAA 175359 ||||| | ||| ||||||||| ||||||||| | || ||| || || || |||||| Sbjct 23328241 CTTCTTGTTGGTCCGCCAGGTACTGGAAAGACCTTGCTAGCCAAGGCTATTGCTGGTGAA 23328300 Query 175360 TCAAATGTCCCATTCATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTG 175419 | ||| || || || | || | | | ||||| |||||||||||||| || Sbjct 23328301 GCCGGTGTTCCTTTTTTCTCGATTTCAGGTTCTGAGTTTGTTGAGATGTTTGTTGGAGTT 23328360 Query 175420 GGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTATTGTC 175479 || || | |||| || ||||| || | | || |||||| || || |||||| Sbjct 23328361 GGGGCTTCACGGGTCCGTGATCTTTTCAAGAAGGCGAAGGAAAATGCTCCCTGCATTGTC 23328420 Query 175480 TTCATTGATGAGATTGATGCGGTGGGCAAGCAACGCAGCGCTGGTGGTATGCCAGCAAAT 175539 || ||||||| |||||||| || || ||| | | ||||| | || |||| Sbjct 23328421 TTTGTTGATGAAATTGATGCTGTTGGGCGTCAAAGAGGAACTGGTATTGGTGGAGGAAAT 23328480 Query 175540 GACGAGAGAGAACAAACAATTAATCAACTACTCACCGAGATGGATGGCTTTGACAATGAG 175599 || || || || || || | || || || | || || |||||||| ||||| | Sbjct 23328481 GATGAAAGGGAGCAGACCCTGAACCAGCTCTTGACAGAAATGGATGGTTTTGAAGGAAAT 23328540 Query 175600 ACTGGCATTGTGGTTATTGCGGCCACTAATCGCGTGGATATCCTTGA 175646 || || || | || ||||| || ||||| || | ||||| ||||| Sbjct 23328541 ACCGGTATAATTGTAATTGCAGCAACTAACCGTGCAGATATTCTTGA 23328587 >seq9 Length=12411895 Score = 96.9 bits (106), Expect = 4e-15 Identities = 158/225 (70%), Gaps = 2/225 (1%) Strand=Plus/Plus Query 75131 GACTATGATTTTGGTTACTTTGGTCTCAAAACCCTTGAGAAGAGCTATCT-TCAACGGCT 75189 |||| ||| | || ||||||||| ||||||||||||| | | || || | || || | Sbjct 8673081 GACTTTGACTATGATTACTTTGGATTCAAAACCCTTGAAAGGTCTTACCTGTTAAAGG-T 8673139 Query 75190 CGATGGCATCCTCATGGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCA 75249 | | |||| | | || | || || ||||||| ||| |||| || | || ||||| Sbjct 8673140 CCAAGGCAAGGTTGTTGAGAGGCCTCAACACATGTTGATGAGGGTTGCCGTTGGTATCCA 8673199 Query 75250 CGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTTCAT 75309 | ||| || |||||||| || | | ||||| | | |||| || | ||||| Sbjct 8673200 CAAGGATGATATTGATTCAGTTATAAAAACATATCATCTGTTGTCTCAGCGATGGTTCAC 8673259 Query 75310 TCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCGCA 75354 ||| ||| | || ||||| ||||||||||| ||||||||||| || Sbjct 8673260 TCATGCATCTCCTACCCTTTTCAATGCTGGAACACCAAGACCACA 8673304 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596448526199680