Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sesamum_20indicum_20[refseq_20GCF_5F000512975.1_202014-01-06] 16,236 sequences; 275,059,498 total letters Query= NC_020855.1 Length=192497 Score E Sequences producing significant alignments: (Bits) Value seq16236 535 5e-147 seq8 295 8e-75 seq6 141 1e-28 seq2 93.3 5e-14 seq3 84.2 3e-11 >seq16236 Length=153324 Score = 535 bits (592), Expect = 5e-147 Identities = 705/975 (72%), Gaps = 2/975 (0%) Strand=Plus/Plus Query 7891 GCTAAGTCTAATGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTCCATACCTAAGTTT 7950 |||| ||||| |||||||| || ||||| | ||||||||||||||||||||| | ||| Sbjct 411 GCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTA 470 Query 7951 GCTCTGTTTAATACGTCACCCCATGTAGGAATGATTTTACCATTAACATCAACAACTGAT 8010 || | ||| | | ||| |||| ||| ||| | || | | |||||| || ||| Sbjct 471 GCACGGTTGATGATATCAGCCCAAGTATTAATTACACGGCCTTGACTATCAACTACAGAT 530 Query 8011 TGGTTAAAGTTAAATCCGTTAAGGTTAAATGCCATTGTGCAAATACCCATAGAAGTTAAC 8070 ||||| || || || ||||| ||||| || ||||| |||| ||||| | || ||| ||| Sbjct 531 TGGTTGAAATTGAAACCGTTTAGGTTGAAAGCCATAGTGCTGATACCTAAAGCAGTGAAC 590 Query 8071 CAAACACATACAACTGGGAATGTAGCGAGGAAGAAGTGAAGACTTCTACTGTTGTT-AAA 8129 || | || || || || | | ||| ||||||||||| | | | |||||| ||| Sbjct 591 CAGATACCCACTACAGGCCAAGCAGCTAGGAAGAAGTGTAACGAACGAGAGTTGTTGAAA 650 Query 8130 CGATGCATACTGGAAGATTAATCTACCAAAGTATCCATGAGCAGCAACAATATTATAGGT 8189 | | ||||| |||||||| |||| ||||| || |||||||| || || |||||||| || Sbjct 651 CTA-GCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCGGCTACGATATTATAAGT 709 Query 8190 CTCTTCTTCTTGACCAAACTTATAACCATAGTTCTGAGACTCTTCTTCAGTTGTCTCTCT 8249 ||||| |||||||| || | ||||| | || ||| || | ||| || || || || Sbjct 710 TTCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCT 769 Query 8250 GATTAGAGAAGATGTAACTAAAGAACCGTGCATAGCACTGAAGAGTGATCCACCGAACAT 8309 ||| | | ||| || || || ||||| |||||||||||||| || || || ||||| | Sbjct 770 GATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCGCCGAATAC 829 Query 8310 ACCTGCTACCCCTGCCATATGGAAAGGATGCATAAGAATGTTATGCTCTGCTTGGAATAC 8369 ||| ||||| ||| ||| || || || |||||||| ||||| ||||| || |||||||| Sbjct 830 ACCAGCTACGCCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATAC 889 Query 8370 GAACATGAAGTTAAACGTACCAGAAATACCTAGAGGCATTCCATCAGAGAATGAACCCTG 8429 | ||||||||| || ||||||||||| ||||||||||| |||||||| || || || Sbjct 890 AATCATGAAGTTGAAAGTACCAGAAATTCCTAGAGGCATACCATCAGAAAAACTTCCTTG 949 Query 8430 ACCAAATGGATATACTAAGAACACTGCGAAAGCAGCAGATACTGGAGCACTATATGCTAC 8489 ||| | ||| || | ||||| || ||| |||||| | || ||||| |||||| || Sbjct 950 ACCGATTGGGTAGATCAAGAAAACAGCGGTAGCAGCTGCAACAGGAGCTGAATATGCAAC 1009 Query 8490 ACAGATCCATGGTCTCATACCTAAGCGGTATGATAACTCCCACTGTCTACCCATGTAAGC 8549 | ||||| |||| |||||| | ||| | | ||||||| | |||||||||| Sbjct 1010 AGCAATCCAAGGTCGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATGTAACA 1069 Query 8550 AGAAATTCCAATAAGGAAGTGGAAGATAACCAACTGATATGGACCTCCGTTATACAACCA 8609 || | |||| | |||||| | | || | | ||| ||||| ||||| || ||||| Sbjct 1070 AGCTACACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCACCGTTGTATAACCA 1129 Query 8610 CTCATCTAATGTGGCAGCTTCCCAAATGGGATAGAAGTGTAATCCAATAGCGTTGGAAGA 8669 ||||| | | || ||||||||||| || || ||||| || || ||||| |||| Sbjct 1130 TTCATCAACGGATGCTGCTTCCCAAATTGGGTAAAAGTGCAAACCGATAGCTGCAGAAGT 1189 Query 8670 TGGAACGACAGCACCAGAGATGATGTTGTTTCCATACATGAATGAACCTGCAACAGGTTC 8729 |||| | ||||| ||||| || |||||||| || | || || || | ||||||||| Sbjct 1190 AGGAATAATGGCACCTGAGATAATATTGTTTCCGTAAAGTAAAGATCCAGAAACAGGTTC 1249 Query 8730 ACGAATACCGTCGATATCGACAGGTGGAGCAGCAATAAATGCCACGATAAAGCAAGTAGC 8789 ||||||||| || ||||| || || || |||||||| || || | ||||| || || Sbjct 1250 ACGAATACCATCAATATCTACTGGAGGGGCAGCAATGAAGGCAATAATAAATACAGAAGT 1309 Query 8790 AGCAGCTAACAAGCAAGGAATCATTAGAACTCCAAACCAACCGACATAAAGTCTGTTGTT 8849 || | || ||| ||| ||||| | ||| |||||||| || | ||||| | ||| | Sbjct 1310 TGCGGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCAATGTAAAGACGGTTTTC 1369 Query 8850 TGTACTTGTAACCCA 8864 || || || | ||| Sbjct 1370 GGTGCTGGTTATCCA 1384 >seq8 Length=21523998 Score = 295 bits (326), Expect = 8e-75 Identities = 429/602 (71%), Gaps = 12/602 (2%) Strand=Plus/Minus Query 7891 GCTAAGTCTAATGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTCCATACCTAAGTTT 7950 |||| ||||| |||||||| || ||||| | |||| |||||||||||||||| | ||| Sbjct 7119937 GCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCACGCATAACTTCCATACCAAGGTTA 7119878 Query 7951 GCTCTGTTTAATACGTCACCCCATGTAGGAATGATTTTACCATTAACATCAACAACTGAT 8010 || | ||| | | ||| |||| ||| ||| | || | |||||| || ||| Sbjct 7119877 GCACGGTTGATCATATCAACCCAGGTATTAATTACACAGCCTTGGCTATCAACTACAGAT 7119818 Query 8011 TGGTTAAAGTTAAATCCGTTAAGGTTAAATGCCATTGTGCAAATACCCATAGAAGTTAAC 8070 ||||| || || || ||||| ||||| || ||||| |||| ||||| | || ||| || Sbjct 7119817 TGGTTGAAATTGAAACCGTTTAGGTTGAAAGCCATAGTGCTGATACCTAAAGGAGTGAAG 7119758 Query 8071 CAAACACATACAACTGGGAATGTAGCGAGGAAGAAGTGAA--GACTTCTACTGTTGTTAA 8128 || | || || | || | | ||| ||||||||||| | || |||||| || Sbjct 7119757 CAGATACGAACTATAGGCCAGGCAGCTAGGAAGAAGTGTAATGATGGGAGCTGTTG--AA 7119700 Query 8129 ACGATGCATACTGGAAGATTAATCTACCAAAGTATCCATGAGCAGCAACAATATTATAGG 8188 || | | ||| |||||||| |||| ||||| || |||||||| || | |||||||| | Sbjct 7119699 ACTA-GTATA-TGGAAGATCAATCGGCCAAAATAACCATGAGCTGCTATGATATTATAAG 7119642 Query 8189 TCTCTTCTTCTTGACCAAACTTATAACCATAGTTCTGAGACTCTTCTTCAGTTGTCTCTC 8248 | |||||||| ||| | | ||| | || ||| || | ||| || || || | Sbjct 7119641 T------TTCTTGACTGAACCTGTGACCTTCTTTAGCAGATTCATTTTCTGTGGTTTCCC 7119588 Query 8249 TGATTAGAGAAGATGTAACTAAAGAACCGTGCATAGCACTGAAGAGTGATCCACCGAACA 8308 |||| | | ||| || || || ||||| |||||||||||||| || || || ||||| | Sbjct 7119587 TGATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTGAATAGGGAACCGCCGAATA 7119528 Query 8309 TACCTGCTACCCCTGCCATATGGAAAGGATGCATAAGAATGTTATGCTCTGCTTGGAATA 8368 ||| ||||| ||| ||| || || || |||||||| |||| ||||| || ||||||| Sbjct 7119527 CACCAGCTACACCTAACATGTGAAATGGGTGCATAAGGTTGTTGTGCTCAGCCTGGAATA 7119468 Query 8369 CGAACATGAAGTTAAACGTACCAGAAATACCTAGAGGCATTCCATCAGAGAATGAACCCT 8428 | | ||||||||| || ||||||||||| ||||||||||| |||||||| || || | Sbjct 7119467 CAATCATGAAGTTGAAAGTACCAGAAATTCCTAGAGGCATACCATCAGAAAAACTTCCTT 7119408 Query 8429 GACCAAATGGATATACTAAGAACACTGCGAAAGCAGCAGATACTGGAGCACTATATGCTA 8488 || | | ||| || | ||||| | | | |||||| | || |||| |||||| | Sbjct 7119407 GATCGATTGGGTAGATCAAGAAAATAGTGGTAGCAGCTGCAACACGAGCTGAATATGCAA 7119348 Query 8489 CA 8490 || Sbjct 7119347 CA 7119346 >seq6 Length=25289714 Score = 141 bits (156), Expect = 1e-28 Identities = 179/246 (73%), Gaps = 0/246 (0%) Strand=Plus/Minus Query 8325 CATATGGAAAGGATGCATAAGAATGTTATGCTCTGCTTGGAATACGAACATGAAGTTAAA 8384 ||| || || || |||||||| ||||| ||||| || |||||||| | ||||||||| || Sbjct 6247131 CATGTGAAATGGGTGCATAAGGATGTTCTGCTCAGCCTGGAATACAATCATGAAGTTGAA 6247072 Query 8385 CGTACCAGAAATACCTAGAGGCATTCCATCAGAGAATGAACCCTGACCAAATGGATATAC 8444 ||||||||||| ||||||||||| |||||||| || || ||||| | ||| || | Sbjct 6247071 AGTACCAGAAATTCCTAGAGGCATACCATCAGAAAAACTTCCTTGACCGATTGGGTAGAT 6247012 Query 8445 TAAGAACACTGCGAAAGCAGCAGATACTGGAGCACTATATGCTACACAGATCCATGGTCT 8504 ||||| || ||| |||||| | || |||| |||||| ||| ||||| ||| Sbjct 6247011 CAAGAAAACAGCGGTAGCAGCTGCAACAGGAGTTGGATATGCAACAGCAATCCAATGTCG 6246952 Query 8505 CATACCTAAGCGGTATGATAACTCCCACTGTCTACCCATGTAAGCAGAAATTCCAATAAG 8564 |||||| | ||| | | ||||||| | |||||||||| || | ||| | | Sbjct 6246951 CATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATGTAACAAGCTACACCATTTAA 6246892 Query 8565 GAAGTG 8570 |||||| Sbjct 6246891 GAAGTG 6246886 >seq2 Length=18500646 Score = 93.3 bits (102), Expect = 5e-14 Identities = 155/220 (70%), Gaps = 3/220 (1%) Strand=Plus/Plus Query 7998 ATCAACAACTGATTGGTTAAAGTTAAATCCGTTAAGGTTAAATGCCATTGTGCAAATACC 8057 |||||| || | ||||| || || || |||| | || || ||||| || ||||| Sbjct 3033928 ATCAACTACAGGTTGGTCGAAATTGAAATCGTTTAAATTGAAAGCCATATCGCTGATACC 3033987 Query 8058 CATAGAAGTTAACCAAACACATACAACTGGGAATGTAGCGAGGAAGAAGTG-AAGACTTC 8116 | || ||| |||| | | || || || | | | | ||||||||||| || | | Sbjct 3033988 TAAAGCAGTGGACCAGATGCCCACTACAGGCCAAGCAACTAGGAAGAAGTGTAACAGAT- 3034046 Query 8117 TACTGTTGTTAAACGATGCATACTGGAAGATTAATCTACCAAAGTATCCATGAGCAGCAA 8176 | |||||| || ||||| |||||||| |||| ||||| || |||||||| || | Sbjct 3034047 GAGAGTTGTTGAAATTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGC-GCTA 3034105 Query 8177 CAATATTATAGGTCTCTTCTTCTTGACCAAACTTATAACC 8216 | |||||||| || ||||| |||||||| || || ||||| Sbjct 3034106 CGATATTATAAGTTTCTTCCTCTTGACCGAATTTGTAACC 3034145 >seq3 Length=24928530 Score = 84.2 bits (92), Expect = 3e-11 Identities = 120/165 (73%), Gaps = 3/165 (2%) Strand=Plus/Minus Query 8584 TGATATGGACCTCCGTTATACAACCACTCATCTAATGTGGCA-GCTTCCCAAATGGGATA 8642 |||||||||| | | | || ||||| ||||| |||| | | ||||||||||| || | Sbjct 18510563 TGATATGGACTACTGGTTTATAACCATTCATC-AATGGGTGATGCTTCCCAAATTGGGCA 18510505 Query 8643 GAAGTGTAATCCAATAGCGTTGGAAGATGGAACGACAGCACCAGAGATGATGTTGTTTCC 8702 | ||| | || ||||| |||| |||| | ||| ||||| ||||||||||| Sbjct 18510504 AACGTGGAGACCGATAGCTGCAGAAGTAGGAATAATGACACTTGAGATAATGTTGTTTCC 18510445 Query 8703 ATACATGAATGAACCTGCAACAGGTTCACGAATACCGTCGATATC 8747 ||| | | | || || | |||||||||||||| ||| || ||||| Sbjct 18510444 ATA-AAGTAAGATCCAGAAACAGGTTCACGAAAACCATCAATATC 18510401 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 615737410725920