Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sesamum_20indicum_20[refseq_20GCF_5F000512975.1_202014-01-06] 16,236 sequences; 275,059,498 total letters Query= NC_020867.1 Length=44892 Score E Sequences producing significant alignments: (Bits) Value seq16236 551 2e-152 seq8 266 9e-67 seq6 149 2e-31 seq2 136 1e-27 seq11 91.5 4e-14 >seq16236 Length=153324 Score = 551 bits (610), Expect = 2e-152 Identities = 724/995 (73%), Gaps = 6/995 (1%) Strand=Plus/Minus Query 42280 TGGGATCAGTTTTGTAACTGGGTGACTTCGACTAACAACCGTCTTTATGTTGGGTGGTTT 42339 |||| || || ||||||||| | || || | ||||||||||| |||| |||||| Sbjct 1402 TGGGGTCGCTTCTGTAACTGGATAACCAGCACCGAAAACCGTCTTTACATTGGATGGTTT 1343 Query 42340 GGTGTGCTGATGATTCCCTGTCTGCTCG-CTGCTACCACCTGT-TTTATTGTCGCTTTCA 42397 ||||| ||||||| |||| || | | | || || | ||| |||||| | || |||| Sbjct 1342 GGTGTTTTGATGAT-CCCTACCTTATTGACCGCAACTTC-TGTATTTATTATTGCCTTCA 1285 Query 42398 TTGCTGCCCCTCCGGTAGACATTGATGGCATTCGTGAACCTGTCTCTGGCTCTCTTCTGT 42457 ||||||||||||| ||||| |||||||| |||||||||||||| ||||| ||| | || | Sbjct 1284 TTGCTGCCCCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTTTACTTT 1225 Query 42458 ATGGCAACAACATCATCTCTGGTGCCGTCGTGCCTAGCAGTAACGCAATTGGACTACATT 42517 | || ||||| || ||||| |||||| | | |||| | || || || | || | Sbjct 1224 ACGGAAACAATATTATCTCAGGTGCCATTATTCCTACTTCTGCAGCTATCGGTTTGCACT 1165 Query 42518 TGTATTCGATCTGGGAAGCCAATACCCTTGACGAATGGCTCTACAATGGCGGACCTTATC 42577 | || | || |||||||| || |||| |||||| | ||||| || || |||||| Sbjct 1164 TTTACCCAATTTGGGAAGCAGCATCCGTTGATGAATGGTTATACAACGGTGGTCCTTATG 1105 Query 42578 AGCTCGTCGTGTTCCACTTCCTTATCGGTATCTTCTCTTACTTGGGACGCGAATGGGAAC 42637 | || | || | |||||| | | ||| | | |||| |||| || || ||||||| Sbjct 1104 AACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAAC 1045 Query 42638 TTTCGTACCGACTTGGGATGAGGCCCTGGATCTTTGTTGCTTACTCTGCCCCTGTGGCTG 42697 || | ||| || || ||| | || ||||| |||||| || || || ||||| || | Sbjct 1044 TTAGTTTCCGTCTGGGTATGCGACCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAG 985 Query 42698 CAGCGACTGCAGTCTTCCTTGTCTATCCATTTGGGCAAGGTTCTTTTTCAGATGGAATGC 42757 | || || || || ||| | |||| ||| | || ||||| |||||| ||||| |||| Sbjct 984 CTGCTACCGCTGTTTTCTTGATCTACCCAATCGGTCAAGGAAGTTTTTCTGATGGTATGC 925 Query 42758 CTCTTGGCATTTCCGGTACGTTCAACTTCATGTTGGTCTTCCAGGCTGAACATAACATTC 42817 |||| || ||||| ||||| |||||||||||| | || ||||||||||| || ||||| | Sbjct 924 CTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCC 865 Query 42818 TTATGCATCCTTTCCATATGCTTGGTGTTGCCGGCGTATTTGGTGGGTCGTTGTTCTCAG 42877 ||||||| || || || ||| | || || || || ||||| || || || | ||| | Sbjct 864 TTATGCACCCATTTCACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTG 805 Query 42878 CTATGCATGGTAGTCTTGTCACCTCTTCTCTTGTGCGTGAAACGACTGAAAACGAAAGCC 42937 ||||||||||| | || || ||| | | | | ||||| || ||||| ||| Sbjct 804 CTATGCATGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTG 745 Query 42938 AAAATTATGGCTACAAGTTCGGTCAAGAGGAGGAGACTTATAACATTGTTGCAGCGCATG 42997 ||| | || |||| |||||||||||||| || |||||||| || || || || |||| Sbjct 744 CTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCCGCTCATG 685 Query 42998 GTTACTTTGGACGGCTTATCTTCCAATATGCGTCGTTT-AATAATAGTCGCTCTTTGCAC 43056 |||| ||||| || | |||||||||||||| | |||| || || ||| || || ||| Sbjct 684 GTTATTTTGGCCGATTGATCTTCCAATATGC-TAGTTTCAACAACTCTCGTTCGTTACAC 626 Query 43057 TTCTTTCTTGCCGCTTGGCCCGTTGTGGGGATTTGGTTCACTTCTCTTGGCGTCAGTACT 43116 ||||| || || |||||||| || ||||| || ||||||||| || | || |||| ||| Sbjct 625 TTCTTCCTAGCTGCTTGGCCTGTAGTGGGTATCTGGTTCACTGCTTTAGGTATCAGCACT 566 Query 43117 ATGGCGTTTAACTTGAATGGTTTTAACTTTAACCAATCACTTGTTGATAATCAGAATCAT 43176 ||||| || ||| | || ||||| || || |||||||| | ||||||| ||| | | Sbjct 565 ATGGCTTTCAACCTAAACGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGCCGT 506 Query 43177 GTCATCCCTACTTGGGCTGATATTTTGAATCGTGCCAACCTTGGCTTTGAGGTGATGCAC 43236 || || ||||||||||||||| | || ||||| |||||||| | || || ||||| Sbjct 505 GTAATTAATACTTGGGCTGATATCATCAACCGTGCTAACCTTGGTATGGAAGTTATGCAT 446 Query 43237 GAGCGGAATGCACATAACTTCCCGCTTGATCTTGC 43271 || || ||||| ||||||||||| || || || || Sbjct 445 GAACGTAATGCTCATAACTTCCCTCTAGACCTAGC 411 >seq8 Length=21523998 Score = 266 bits (294), Expect = 9e-67 Identities = 426/604 (71%), Gaps = 16/604 (3%) Strand=Plus/Plus Query 42672 TGTTGCTTACTCTGCCCCTGTGGCTGCAGCGACTGCAGTCTTCCTTGTCTATCCATTTGG 42731 |||||| || || || | ||| || || || || | | ||| | |||| ||| | | Sbjct 7119346 TGTTGCATATTCAGCTCGTGTTGCAGCTGCTACCACTATTTTCTTGATCTACCCAATCGA 7119405 Query 42732 GCAAGGTTCTTTTTCAGATGGAATGCCTCTTGGCATTTCCGGTACGTTCAACTTCATGTT 42791 ||||| |||||| ||||| |||||||| || ||||| ||||| |||||||||||| | Sbjct 7119406 TCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGAT 7119465 Query 42792 GGTCTTCCAGGCTGAACATAACATTCTTATGCATCCTTTCCATATGCTTGGTGTTGCCGG 42851 || ||||||||||| || |||| |||||||| || || || ||| | ||||| || || Sbjct 7119466 TGTATTCCAGGCTGAGCACAACAACCTTATGCACCCATTTCACATGTTAGGTGTAGCTGG 7119525 Query 42852 CGTATTTGGTGGGTCGTTGTTCTCAGCTATGCATGGTAGTCTTGTCACCTCTTCTCTTGT 42911 ||||| || || || | ||| |||||||||||| | || || ||| | | | Sbjct 7119526 TGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTGAT 7119585 Query 42912 GCGTGAAACGACTGAAAACGAA--AGCCAAAATTATGGCTACAAGTTCGGTCAAGAGGAG 42969 | ||||| || ||||| ||| || ||| | || ||| |||| ||||| Sbjct 7119586 CAGGGAAACCACAGAAAATGAATCTGCTAAA--GAAGGTCACAGGTTCAGTCAA------ 7119637 Query 42970 GAGACTTATAACATTGTTGCAGCGCATGGTTACTTTGGACGGCTTATCTTCCAATATGCG 43029 || |||||||| || | ||||| |||||||| ||||| || | ||||||| |||| | Sbjct 7119638 GAAACTTATAATATCATAGCAGCTCATGGTTATTTTGGCCGATTGATCTTCC-ATATAC- 7119695 Query 43030 TCGTTTAATAATAG-TCGC-TCTTTGCACTTCTTTCTTGCCGCTTGGCCCGTTGTGGGGA 43087 | |||| || || || | || || |||||||| || || || ||||| | || | | Sbjct 7119696 TAGTTT--CAACAGCTCCCATCATTACACTTCTTCCTAGCTGCCTGGCCTATAGTTCGTA 7119753 Query 43088 TTTGGTTCACTTCTCTTGGCGTCAGTACTATGGCGTTTAACTTGAATGGTTTTAACTTTA 43147 | || |||||| || | || |||| |||||||| || ||| | || ||||| || || | Sbjct 7119754 TCTGCTTCACTCCTTTAGGTATCAGCACTATGGCTTTCAACCTAAACGGTTTCAATTTCA 7119813 Query 43148 ACCAATCACTTGTTGATAATCAGAATCATGTCATCCCTACTTGGGCTGATATTTTGAATC 43207 ||||||| | ||||||| || ||| || ||| |||| |||||| | || | Sbjct 7119814 ACCAATCTGTAGTTGATAGCCAAGGCTGTGTAATTAATACCTGGGTTGATATGATCAACC 7119873 Query 43208 GTGCCAACCTTGGCTTTGAGGTGATGCACGAGCGGAATGCACATAACTTCCCGCTTGATC 43267 |||| |||||||| | || || |||| || || ||||| ||||||||||| || || | Sbjct 7119874 GTGCTAACCTTGGTATGGAAGTTATGCGTGAACGTAATGCTCATAACTTCCCTCTAGACC 7119933 Query 43268 TTGC 43271 | || Sbjct 7119934 TAGC 7119937 >seq6 Length=25289714 Score = 149 bits (164), Expect = 2e-31 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 42615 TTACTTGGGACGCGAATGGGAACTTTCGTACCGACTTGGGATGAGGCCCTGGATCTTTGT 42674 |||| |||| || || ||||||||| | ||| || || ||| | | ||||| ||| Sbjct 6246909 TTACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGACATTGGATTGCTGT 6246968 Query 42675 TGCTTACTCTGCCCCTGTGGCTGCAGCGACTGCAGTCTTCCTTGTCTATCCATTTGGGCA 42734 ||| || | | ||||| || || || || || || ||| | |||| ||| | || || Sbjct 6246969 TGCATATCCAACTCCTGTTGCAGCTGCTACCGCTGTTTTCTTGATCTACCCAATCGGTCA 6247028 Query 42735 AGGTTCTTTTTCAGATGGAATGCCTCTTGGCATTTCCGGTACGTTCAACTTCATGTTGGT 42794 ||| |||||| ||||| |||||||| || ||||| ||||| |||||||||||| | || Sbjct 6247029 AGGAAGTTTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGT 6247088 Query 42795 CTTCCAGGCTGAACATAACATTCTTATGCATCCTTTCCATATGCTTG 42841 ||||||||||| || ||||| |||||||| || || || ||| ||| Sbjct 6247089 ATTCCAGGCTGAGCAGAACATCCTTATGCACCCATTTCACATGTTTG 6247135 >seq2 Length=18500646 Score = 136 bits (150), Expect = 1e-27 Identities = 171/231 (74%), Gaps = 3/231 (1%) Strand=Plus/Minus Query 42940 AATTATGGCTACAAGTTCGGTCAAGAGGAGGAGACTTATAACATTGTTGCAGCGCATGGT 42999 ||| | || ||||| |||||||||||||| || |||||||| || || || || |||||| Sbjct 3034151 AATGAAGGTTACAAATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGC-GCTCATGGT 3034093 Query 43000 TACTTTGGACGGCTTATCTTCCAATATGCGTCGTTTAATAATAGTCGCTCT-TTGCACTT 43058 || ||||| || | |||||||||||||| || || || || ||| || ||||| Sbjct 3034092 TATTTTGGCCGATTGATCTTCCAATATGCTAATTTCAACAACTCTCA-TCTGTTACACTT 3034034 Query 43059 CTTTCTTGCCGCTTGGCCCGTTGTGGGGATTTGGTTCACTTCTCTTGGCGTCAGTACTAT 43118 ||| || | |||||||| || ||||| || |||| |||| || | || |||| ||| Sbjct 3034033 CTTCCTAGTTGCTTGGCCTGTAGTGGGCATCTGGTCCACTGCTTTAGGTATCAGCGATAT 3033974 Query 43119 GGCGTTTAACTTGAATGGTTTTAACTTTAACCAATCACTTGTTGATAATCA 43169 ||| || || || || | ||| || || ||||| | | ||||||||||| Sbjct 3033973 GGCTTTCAATTTAAACGATTTCAATTTCGACCAACCTGTAGTTGATAATCA 3033923 >seq11 Length=15446199 Score = 91.5 bits (100), Expect = 4e-14 Identities = 106/138 (77%), Gaps = 4/138 (3%) Strand=Plus/Plus Query 42331 GGGTGGTTTGGTGTGCTGATGATTCCCTGTCTGCTCG-CTGCTACCACCTGT-TTTATTG 42388 || ||||||||| | ||||||| |||| || | | | || || | ||| |||||| Sbjct 4695626 GGATGGTTTGGTATTTTGATGAT-CCCTACCTTATTGACCGCAACTTC-TGTATTTATTA 4695683 Query 42389 TCGCTTTCATTGCTGCCCCTCCGGTAGACATTGATGGCATTCGTGAACCTGTCTCTGGCT 42448 | || ||||||||||||||||| ||||| |||||||| |||||||||||| | ||||| | Sbjct 4695684 TTGCCTTCATTGCTGCCCCTCCAGTAGATATTGATGGTATTCGTGAACCTTTTTCTGGAT 4695743 Query 42449 CTCTTCTGTATGGCAACA 42466 || | || || | |||| Sbjct 4695744 CTTTACTTTACGAAAACA 4695761 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143505126517328