Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sesamum_20indicum_20[refseq_20GCF_5F000512975.1_202014-01-06] 16,236 sequences; 275,059,498 total letters Query= NC_021071.1 Length=177211 Score E Sequences producing significant alignments: (Bits) Value seq16236 619 1e-172 seq8 351 1e-91 seq6 181 1e-40 seq2 143 3e-29 seq3 105 8e-18 >seq16236 Length=153324 Score = 619 bits (686), Expect = 1e-172 Identities = 708/950 (75%), Gaps = 6/950 (1%) Strand=Plus/Plus Query 67358 AGCAGCAAGGTCAAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATAACTTCCATTCCAAG 67417 |||||| ||||| ||||||||||| ||||| ||||| || |||||||||||||| ||||| Sbjct 407 AGCAGCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAG 466 Query 67418 TCCTGCTCTGTTAAGGATGTCTGCCCAAGTAGGAATCACTTTACCACCTGCG---TCAAC 67474 || | ||| | ||| || ||||||||| ||| || || ||| ||||| Sbjct 467 GTTAGCACGGTTGATGATATCAGCCCAAGTATTAATTAC---ACGGCCTTGACTATCAAC 523 Query 67475 GACGGATTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATAGTTGACACACCCATTGC 67534 || ||||||||||| ||||||||||| |||||||| |||||||| | ||| | || Sbjct 524 TACAGATTGGTTGAAATTGAAACCGTTTAGGTTGAAAGCCATAGTGCTGATACCTAAAGC 583 Query 67535 AGTGAACCAGATGCAGACCACAGGGAATGCAGCAAGGAAGAAGTGAAGACTTCTTGAGTT 67594 |||||||||||| | || ||||| | ||||| ||||||||||| | | ||||| Sbjct 584 AGTGAACCAGATACCCACTACAGGCCAAGCAGCTAGGAAGAAGTGTAACGAACGAGAGTT 643 Query 67595 GTTGAAAGATGCATACTGGAAGATCAAGCGACCGAAGTATCCATGAGCAGCAACAATGTT 67654 ||||||| ||||| ||||||||||| || || || || |||||||| || || || || Sbjct 644 GTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCGGCTACGATATT 703 Query 67655 GTAAGTCTCTTCTTCTTGTCCGAACTTGTAACCGTAGTTCTGTGACTCTTGCTCAGTAGT 67714 ||||| ||||| ||||| ||||| ||||||| | || || || | || || || Sbjct 704 ATAAGTTTCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGT 763 Query 67715 TTCTCTGATAAGAGAAGAAGTAACAAGAGAACCGTGCATAGCACTAAAGAGTGAACCACC 67774 ||| ||||| | | |||||| || | ||||| ||||||||||| || || || || || Sbjct 764 TTCCCTGATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCGCC 823 Query 67775 GAATACACCTGCTACTCCAAGCATATGGAATGGGTGCATAAGGATGTTGTGCTCTGCTTG 67834 ||||||||| ||||| || | ||| || |||||||||||||||||||||||||| || || Sbjct 824 GAATACACCAGCTACGCCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTG 883 Query 67835 GAACACGAACATGTAGTTAAAAGTACCAGAAATACCAAGAGGCATTGCGTCAGAGAAAGA 67894 ||| || | |||| |||| |||||||||||||| || |||||||| | ||||| ||| Sbjct 884 GAATACAATCATGAAGTTGAAAGTACCAGAAATTCCTAGAGGCATACCATCAGAAAAACT 943 Query 67895 ACCTTGACCGAAAGGATAGACCAAGAACACAGCGAATGCTGCAGACACTGGAGCAGAGTA 67954 |||||||||| || |||| |||||| |||||| || || | || ||||| || || Sbjct 944 TCCTTGACCGATTGGGTAGATCAAGAAAACAGCGGTAGCAGCTGCAACAGGAGCTGAATA 1003 Query 67955 TGCTACACAGATCCAAGGACGCATACCAAGACGGTAAGAAAGTTCCCACTGACGACCACA 68014 ||| ||| |||||||| |||||||| |||||| || ||||||||||| |||||| Sbjct 1004 TGCAACAGCAATCCAAGGTCGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCAT 1063 Query 68015 GTATGCTGTGATTCCGATAAGGAAGTGGAAGACTACAAGTTGGAAAGGTCCACCATTATA 68074 ||| | | || | | |||||| | || | |||| |||| ||||| || || Sbjct 1064 GTAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCACCGTTGTA 1123 Query 68075 CAACCACTCATCTAGAGTTGCTGCTTCCCAGATAGGATAGAAGTGAAGACCGATTGCGTT 68134 ||||| ||||| | | |||||||||||| || || || ||||| | |||||| || Sbjct 1124 TAACCATTCATCAACGGATGCTGCTTCCCAAATTGGGTAAAAGTGCAAACCGATAGCTGC 1183 Query 68135 TGAACTAGGAACAACAGCACCAGAAATGATGTTGTTACCGTACATGAGCGAACCTGCAAC 68194 ||| |||||| || ||||| || || || ||||| ||||| | | || || | ||| Sbjct 1184 AGAAGTAGGAATAATGGCACCTGAGATAATATTGTTTCCGTAAAGTAAAGATCCAGAAAC 1243 Query 68195 AGGTTCTCTGATACCATCGATATCAACTGGAGGTGCTGCAATGAATGCAATGATGAAGCA 68254 |||||| | |||||||| ||||| |||||||| || |||||||| ||||| || || Sbjct 1244 AGGTTCACGAATACCATCAATATCTACTGGAGGGGCAGCAATGAAGGCAATAATAAATAC 1303 Query 68255 AGTTGCTGCTGCGAGCAAGCAAGGAATCATCAACACACCGAACCAACCAA 68304 || | ||| | | ||| ||| |||||||| ||||| ||||| |||| Sbjct 1304 AGAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCAA 1353 >seq8 Length=21523998 Score = 351 bits (388), Expect = 1e-91 Identities = 444/607 (73%), Gaps = 14/607 (2%) Strand=Plus/Minus Query 67358 AGCAGCAAGGTCAAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATAACTTCCATTCCAAG 67417 |||||| ||||| ||||||||||| ||||| ||||| || ||||||||||||| ||||| Sbjct 7119941 AGCAGCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCACGCATAACTTCCATACCAAG 7119882 Query 67418 TCCTGCTCTGTTAAGGATGTCTGCCCAAGTAGGAATCACTTTACCACCTGCG---TCAAC 67474 || | ||| | || || |||| ||| ||| || || ||| | ||||| Sbjct 7119881 GTTAGCACGGTTGATCATATCAACCCAGGTATTAATTAC---ACAGCCTTGGCTATCAAC 7119825 Query 67475 GACGGATTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATAGTTGACACACCCATTGC 67534 || ||||||||||| ||||||||||| |||||||| |||||||| | ||| | | Sbjct 7119824 TACAGATTGGTTGAAATTGAAACCGTTTAGGTTGAAAGCCATAGTGCTGATACCTAAAGG 7119765 Query 67535 AGTGAACCAGATGCAGACCACAGGGAATGCAGCAAGGAAGAAGTGAAGACTTCTTGAGTT 67594 |||||| ||||| | || | ||| | ||||| ||||||||||| | | ||| | Sbjct 7119764 AGTGAAGCAGATACGAACTATAGGCCAGGCAGCTAGGAAGAAGTGTAATGATGG-GAGCT 7119706 Query 67595 GTTGAAAGATGCATACTGGAAGATCAAGCGACCGAAGTATCCATGAGCAGCAACAATGTT 67654 ||||||| | ||| ||||||||||| || || || || |||||||| || | || || Sbjct 7119705 GTTGAAACTAGTATA-TGGAAGATCAATCGGCCAAAATAACCATGAGCTGCTATGATATT 7119647 Query 67655 GTAAGTCTCTTCTTCTTGTCCGAACTTGTAACCGTAGTTCTGTGACTCTTGCTCAGTAGT 67714 ||||| |||||| | |||| ||| ||| | || || || | || || || Sbjct 7119646 ATAAGT------TTCTTGACTGAACCTGTGACCTTCTTTAGCAGATTCATTTTCTGTGGT 7119593 Query 67715 TTCTCTGATAAGAGAAGAAGTAACAAGAGAACCGTGCATAGCACTAAAGAGTGAACCACC 67774 ||| ||||| | | |||||| || | ||||| ||||||||||| || || ||||| || Sbjct 7119592 TTCCCTGATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTGAATAGGGAACCGCC 7119533 Query 67775 GAATACACCTGCTACTCCAAGCATATGGAATGGGTGCATAAGGATGTTGTGCTCTGCTTG 67834 ||||||||| ||||| || | ||| || ||||||||||||||| |||||||||| || || Sbjct 7119532 GAATACACCAGCTACACCTAACATGTGAAATGGGTGCATAAGGTTGTTGTGCTCAGCCTG 7119473 Query 67835 GAACACGAACATGTAGTTAAAAGTACCAGAAATACCAAGAGGCATTGCGTCAGAGAAAGA 67894 ||| || | |||| |||| |||||||||||||| || |||||||| | ||||| ||| Sbjct 7119472 GAATACAATCATGAAGTTGAAAGTACCAGAAATTCCTAGAGGCATACCATCAGAAAAACT 7119413 Query 67895 ACCTTGACCGAAAGGATAGACCAAGAACACAGCGAATGCTGCAGACACTGGAGCAGAGTA 67954 |||||| ||| || |||| |||||| | || | || || | || |||| || || Sbjct 7119412 TCCTTGATCGATTGGGTAGATCAAGAAAATAGTGGTAGCAGCTGCAACACGAGCTGAATA 7119353 Query 67955 TGCTACA 67961 ||| ||| Sbjct 7119352 TGCAACA 7119346 >seq6 Length=25289714 Score = 181 bits (200), Expect = 1e-40 Identities = 172/220 (78%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 67792 CAAGCATATGGAATGGGTGCATAAGGATGTTGTGCTCTGCTTGGAACACGAACATGTAGT 67851 ||| ||| || |||||||||||||||||||| ||||| || ||||| || | |||| ||| Sbjct 6247135 CAAACATGTGAAATGGGTGCATAAGGATGTTCTGCTCAGCCTGGAATACAATCATGAAGT 6247076 Query 67852 TAAAAGTACCAGAAATACCAAGAGGCATTGCGTCAGAGAAAGAACCTTGACCGAAAGGAT 67911 | |||||||||||||| || |||||||| | ||||| ||| |||||||||| || | Sbjct 6247075 TGAAAGTACCAGAAATTCCTAGAGGCATACCATCAGAAAAACTTCCTTGACCGATTGGGT 6247016 Query 67912 AGACCAAGAACACAGCGAATGCTGCAGACACTGGAGCAGAGTATGCTACACAGATCCAAG 67971 ||| |||||| |||||| || || | || |||| | ||||| ||| |||||| Sbjct 6247015 AGATCAAGAAAACAGCGGTAGCAGCTGCAACAGGAGTTGGATATGCAACAGCAATCCAAT 6246956 Query 67972 GACGCATACCAAGACGGTAAGAAAGTTCCCACTGACGACC 68011 | |||||||| |||||| || ||||||||||| |||||| Sbjct 6246955 GTCGCATACCCAGACGGAAACTAAGTTCCCACTCACGACC 6246916 >seq2 Length=18500646 Score = 143 bits (158), Expect = 3e-29 Identities = 168/221 (76%), Gaps = 7/221 (3%) Strand=Plus/Plus Query 67470 TCAACGACGGATTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATA--GTTGACACAC 67527 ||||| || | ||||| ||| |||||| |||| | ||||| |||||| | ||| || Sbjct 3033929 TCAACTACAGGTTGGTCGAAATTGAAATCGTTTAAATTGAAAGCCATATCGCTGATAC-- 3033986 Query 67528 CCATTGCAGTGAACCAGATGCAGACCACAGGGAATGCAGCAAGGAAGAAGTG-AAGACTT 67586 | | |||||| ||||||||| || ||||| | ||| | ||||||||||| || | | Sbjct 3033987 CTAAAGCAGTGGACCAGATGCCCACTACAGGCCAAGCAACTAGGAAGAAGTGTAACAGAT 3034046 Query 67587 CTTGAGTTGTTGAAAGATGCATACTGGAAGATCAAGCGACCGAAGTATCCATGAGCAGCA 67646 |||||||||||| ||||| ||||||||||| || || || || |||||||| || Sbjct 3034047 -GAGAGTTGTTGAAATTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGC-GCT 3034104 Query 67647 ACAATGTTGTAAGTCTCTTCTTCTTGTCCGAACTTGTAACC 67687 || || || ||||| ||||| ||||| ||||| |||||||| Sbjct 3034105 ACGATATTATAAGTTTCTTCCTCTTGACCGAATTTGTAACC 3034145 >seq3 Length=24928530 Score = 105 bits (116), Expect = 8e-18 Identities = 142/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 67615 AGATCAAGCGACCGAAGTATCCATGAGCAGCAACAATGTTGTAAGTCTCTTCTTCTTGTC 67674 ||||||| || || || || |||||||| | || || || ||||| |||| ||||| | Sbjct 17256408 AGATCAATCGGCCAAAATAACCATGAGCTACTACGATATTATAAGTTTCTTTCTCTTGAC 17256349 Query 67675 CGAACTTGTAACCGTAGTTCTGTGACTCTTGCTCAGTAGTTTCTCTGATAAGAGAAGAAG 67734 |||| |||||||| | || | || | || || ||||| ||||| | |||| Sbjct 17256348 CGAATTTGTAACCTTCATTAGCATATTCATTTTCTGTGGTTTCCCTGATCAACCTTGAAG 17256289 Query 67735 TAACAAGAGAACCGTGCATAGCACTAAAGAGTGAACCACCGAATACACCTGCTACTCCAA 67794 | || | ||||| |||||| |||| || || || || ||||||||||| |||| || | Sbjct 17256288 TTACCAAGGAACCATGCATAACACTGAATAGGGAGCCGCCGAATACACCAGCTATGCCTA 17256229 Query 67795 GCATATGGAATGGGTGCA 67812 ||| || ||| |||||| Sbjct 17256228 ACATGTGAAATAGGTGCA 17256211 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 566832138065760