Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sesamum_20indicum_20[refseq_20GCF_5F000512975.1_202014-01-06] 16,236 sequences; 275,059,498 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq5 143 4e-29 seq11 131 2e-25 seq15 125 1e-23 seq13 93.3 6e-14 >seq5 Length=18898134 Score = 143 bits (158), Expect = 4e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | ||||| |||||||| || || ||||||||||| || || ||| Sbjct 2599103 ATGCAGATTTTTGTCAAAACCTTGACTGGGAAGACCATTACATTAGAGGTTGAGAGTTCA 2599044 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || || || || || || || ||||| |||||||| |||||||| ||| Sbjct 2599043 GACACAATCGACAATGTCAAGGCCAAGATTCAGGATAAGGAAGGCATTCCTCCAGACCAA 2598984 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || ||||||| | ||| ||||||||||| |||||| ||| ||| | | ||||||||| Sbjct 2598983 CAGCGATTGATCTTTGCTGGTAAGCAGCTTGAAGATGGCAGGACTCTTGCTGATTATAAT 2598924 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGG 156049 || |||||| | || |||||| |||| || |||| ||||| || Sbjct 2598923 ATTCAAAAAGAGTCTACTCTTCATCTAGTTTTGCGATTGAGAGGTGG 2598877 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||||||| | || || | ||||| ||||||||||| | ||||| ||| || Sbjct 2599331 ATGCAAATATTTGTGAAGACTCTTACTGGTAAAACTATTACCCTGGAAGTTGAAAGCTCA 2599272 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| || || ||| ||||| || || || || || || |||||||| || Sbjct 2599271 GACACAATTGACAATGTCAAAGCAAAAATTCAGGACAAGGAGGGGATTCCTCCAGACCAG 2599212 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || |||||||| | ||| || || || || || ||| || || || ||||||| ||| Sbjct 2599211 CAGAGATTGATCTTTGCTGGCAAACAACTTGAGGATGGAAGGACCTTGGCAGATTACAAT 2599152 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGG 156049 || || || |||| || ||| | ||| | |||| || || || Sbjct 2599151 ATTCAGAAGGAATCGACCCTCCATCTTGTGCTGCGATTGAGGGGTGG 2599105 Score = 91.5 bits (100), Expect = 2e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | || || ||||| || || || || || || || || ||| ||| Sbjct 2598875 ATGCAAATCTTTGTAAAGACTTTGACAGGGAAGACAATCACTTTGGAGGTGGAAAGCTCT 2598816 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| || ||||| ||||| || || || ||||| ||||| || || || Sbjct 2598815 GATACAATTGATAATGTGAAGGCAAAAATTCAGGACAAGGAAGGGATACCACCGGATCAG 2598756 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || | |||| | ||| || ||||||||||||||| | | || | |||||||||| Sbjct 2598755 CAGCGGCTGATCTTTGCAGGGAAGCAGCTCGAAGATGGCCGTACCCTTGCAGATTATAAC 2598696 Query 156003 ATATCCAAAGAGGCGACGCTTCA 156025 || ||||| | || ||||| Sbjct 2598695 ATCCAGAAAGAATCAACCCTTCA 2598673 >seq11 Length=15446199 Score = 131 bits (144), Expect = 2e-25 Identities = 159/215 (74%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||||||| | ||||| ||||||||||| || || || ||||| || || ||| Sbjct 11225744 AATGCAAATATTTGTCAAAACTTTGACTGGAAAGACCATCACTTTAGAGGTTGAGAGTTC 11225803 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 |||| ||| || || || || || || ||||||||||| || ||||| || || Sbjct 11225804 GGATACAATTGACAATGTTAAGGCGAAGATTCAGGATAAAGAAGGTATTCCTCCGGACCA 11225863 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 || | ||||| | ||| ||||||||||| |||||| ||||||| | | ||||||| Sbjct 11225864 GCAGCGCTTGATCTTTGCTGGTAAGCAGCTTGAAGATGGCAGAACTCTTGCTGATTATA- 11225922 Query 156002 TATATCCAAA--GAGGCGACGCTTCATTTAGTGTT 156034 | ||||||| ||| | || |||||| | || || Sbjct 11225923 -ACATCCAAAAGGAGTCAACTCTTCATCTTGTCTT 11225956 Score = 116 bits (128), Expect = 5e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| |||| || ||||| || || || || ||||| || || || || Sbjct 13254077 ATGCAGATTTTTGTTAAGACCTTGACGGGGAAGACCATAACATTGGAGGTTGAGAGCTCG 13254018 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | |||| || || || ||||| |||||||| ||||| || || || || ||| Sbjct 13254017 GACACTATTGACAATGTTAAGGCCAAAATCCAAGATAAGGAAGGGATTCCCCCTGATCAA 13253958 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || | ||||||| ||| |||||||||||||| ||| ||| || | | || |||||| Sbjct 13253957 CAGCGTTTGATTTTTGCTGGTAAGCAGCTCGAGGATGGCAGGACCCTCGCTGACTATAAT 13253898 Query 156003 ATATCCAAA-GAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGG 156049 || || ||| ||| |||| || || | ||||| ||| | ||||| || Sbjct 13253897 AT-TCAAAAGGAGTCGACACTGCACCTGGTGTTGAGACTGAGAGGAGG 13253851 Score = 109 bits (120), Expect = 8e-19 Identities = 117/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | || || |||| || || || || || | || ||||| ||| Sbjct 13254533 ATGCAAATCTTTGTAAAGACCCTGACCGGCAAGACCATAACTCTCGAGGTCGAGAGTTCC 13254474 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| |||| || || ||| ||| || |||||||||||||| || ||||| || || Sbjct 13254473 GATACTATTGATAATGTAAAAGCTAAGATTCAAGATAAAGAAGGAATTCCTCCTGATCAG 13254414 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGA 155977 ||||||||||||| ||| || |||||||| ||||| Sbjct 13254413 CAAAGATTGATTTTTGCTGGAAAGCAGCTTGAAGA 13254379 Score = 102 bits (112), Expect = 1e-16 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | ||||| |||| || || |||||||| | ||||| || ||| Sbjct 13442082 ATGCAGATTTTTGTAAAAACCCTGACGGGCAAGACTATTACCCTGGAAGTTGAGAGCTCT 13442141 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| || || ||| ||||| || || |||||||| || || ||||| ||| Sbjct 13442142 GATACAATTGACAATGTAAAAGCAAAAATTCAGGACAAAGAAGGAATTCCACCAGATCAA 13442201 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || |||||| || || |||||| | |||||| || ||| | | ||||||||| Sbjct 13442202 CAGAGGCTGATTTTCGCTGGCAAGCAGTTGGAAGATGGAAGGACTCTGGCCGATTATAAT 13442261 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGT 156031 || || ||| |||| | ||||| || Sbjct 13442262 ATTCAGAAGGAGTCGACTTTGCATTTGGT 13442290 Score = 102 bits (112), Expect = 1e-16 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || || | || |||||||| |||||||| || || | ||||| || ||| Sbjct 13442310 ATGCAGATTTTCGTGAAGACATTGACAGGAAAAACCATCACCCTGGAAGTGGAGAGTTCG 13442369 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| || || || || || || ||||| |||||||| || ||||| || Sbjct 13442370 GACACCATTGATAATGTCAAGGCAAAGATCCAGGATAAGGAAGGCATCCCACCAGACCAG 13442429 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || ||| |||| | ||| ||||||||||| || ||| |||||| | | |||||||| Sbjct 13442430 CAGAGACTGATCTTTGCTGGTAAGCAGCTTGAGGATGGGAGAACTCTCGCTGATTATAAC 13442489 Query 156003 ATATCCAAAGAGGCGACGCTTCAT 156026 || || ||| |||| |||||| Sbjct 13442490 ATTCAGAAGGAGTCGACTCTTCAT 13442513 Score = 98.7 bits (108), Expect = 1e-15 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | || || |||||||| || || || || || || || || ||| Sbjct 13253849 ATGCAGATCTTTGTCAAGACCTTGACTGGGAAGACAATCACTTTGGAGGTTGAGAGTTCG 13253790 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| || || ||||| || || ||||| || |||||||| ||||| || || Sbjct 13253789 GATACAATAGACAATGTGAAGGCAAAGATTCAAGACAAGGAAGGCATTCCTCCGGACCAG 13253730 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || | ||||| | ||| ||||||||||| || || ||| || | | || |||||| Sbjct 13253729 CAGCGTTTGATCTTTGCTGGTAAGCAGCTTGAGGACGGCAGGACCCTTGCTGACTATAAT 13253670 Query 156003 ATATCCAAA-GAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGG 156049 || || ||| ||| |||| || || | ||||| ||| | ||||| || Sbjct 13253669 AT-TCAAAAGGAGTCGACTCTCCACCTGGTGTTGAGACTGAGAGGAGG 13253623 Score = 96.9 bits (106), Expect = 5e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| |||| || |||||||||||||| || || | || || || ||| Sbjct 11225973 ATGCAAATTTTTGTTAAGACCTTGACTGGAAAAACAATCACTCTGGAGGTGGAGAGTTCA 11226032 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| || ||||| || || ||||| || || || || || ||||| ||| Sbjct 11226033 GATACAATTGATAATGTGAAGGCAAAGATTCAAGACAAGGAGGGGATTCCACCAGATCAA 11226092 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| | | || | ||| || |||||||| || ||| | | || | | ||||||||| Sbjct 11226093 CAACGGCTCATCTTTGCTGGGAAGCAGCTTGAGGATGGCCGTACACTTGCCGATTATAAT 11226152 Query 156003 ATATCCAAAGAGGCGACGCTTCA 156025 || |||||| | || ||||| Sbjct 11226153 ATCCAGAAAGAGTCAACTCTTCA 11226175 >seq15 Length=10047770 Score = 125 bits (138), Expect = 1e-23 Identities = 359/552 (65%), Gaps = 7/552 (1%) Strand=Plus/Plus Query 18155 AAACACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTT 18214 || ||||||||||| ||| ||||| ||||| | || ||||||||||| || ||| Sbjct 1769303 AAGCACGCAAAATCGCAGTGCAAACCCTCATCCCGTGAGATTAATTCGTTGGAGAAAGTT 1769362 Query 18215 AACCCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAG 18274 || || ||||| | ||| | || || ||||||||||| | ||| || | || || Sbjct 1769363 AAACCCGGCATCAAACCACGCTTCTTCAGCCAAAATATTGCACAGAAGCTTCCCGAGAAA 1769422 Query 18275 AATATACCCTCAACGCACGCGAACGCTATTAATCTTTCAGCAAAACTGTATTTATTGCTC 18334 ||||| || || || || || || | ||||||| ||| |||||| | || | || Sbjct 1769423 AATATGCCTTCCACACAAGCAAATCCGATTAATCGTTCGGCAAAAGT---TTCAGAGCCA 1769479 Query 18335 AGTATCCATTTTTGTGCCCATTCTCCTTNNNNNNNNATACACGGTATACTCTCTATAGCA 18394 ||||| | ||||||| | | | ||| || | | |||| || || Sbjct 1769480 TCGATCCAGCGTAAAGCCCATTTAGCCTTCTTCTCCACACATGGGACAGTCTCGATTGCG 1769539 Query 18395 TTAAACAAATCATCTTTTTCTTTG--GAATCTTTTATATAAGTGTCGATTAACAAAGAAT 18452 || ||| ||| || |||| | ||||| |||||||| | || | || | | || Sbjct 1769540 CGAA--AAAGCATGTTCTTCTCGGCCGAATCCTTTATATAGGATTCAAGCAAAAGACTAT 1769597 Query 18453 ACATTTCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGG 18512 |||| || ||||| ||| | || || || |||||||| | ||| || | | |||||||| Sbjct 1769598 ACATCTCGGAATGGATGTTCTCAATGGCAATCTGAAACCCATAGAAGGCACGAGCCTCGG 1769657 Query 18513 GATATTGAATCTCGCTATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAGCAG 18572 |||| || | || | | | | | ||||| ||| || || |||| | Sbjct 1769658 AGACCTGAACTTCCTTCATGAAGCGTCCAGCAAGGTTCTCCAAAACAATGCCATCAGAGG 1769717 Query 18573 ATGCGAAAAATGCCAAAACATATTTAATGAAATGTTTTTCATTATCCTTGAGATTGTTCC 18632 ||||| || || | ||| | ||| |||||||| || || | | |||| || | || Sbjct 1769718 CGGCGAAGAAGGCGAGAACGTGTTTGATGAAATGCTTCTCGTCAGAAGTGAGGTTTTCCC 1769777 Query 18633 ATTCATCTATATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGATGATTCGGCCT 18692 | | | |||| || | ||| ||||| |||| ||||| || || | |||||| | Sbjct 1769778 AGTGGCGGAGGTCTTGGGACAAATCCACTTCCTCCGCAGTCCAGAAGGACGCTTCGGCTT 1769837 Query 18693 GTTTGTACATTT 18704 |||||||||| Sbjct 1769838 TCTTGTACATTT 1769849 >seq13 Length=5050363 Score = 93.3 bits (102), Expect = 6e-14 Identities = 117/161 (73%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 18158 CACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTTAAC 18217 |||||||||||| || ||||||||||||| || |||||||| || || || || Sbjct 3176219 CACGCAAAATCACAATGCAAACCTTCATCTCGCGAAATTAATTCATTGGAGAAAGTCAAG 3176160 Query 18218 CCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAGAAT 18277 || ||||| || || | ||||| | ||||||||| | ||| || | || || ||| Sbjct 3176159 CCCGGCATCATCCCGCGCTTTTTCAACCAAAATATGGCGCAGAAGCTCCCCGAGAAAAAT 3176100 Query 18278 ATACCCTCAACGCACGCGAACGCTATTAATCTTTCAGCAAA 18318 || |||||||| || || || || | ||| | |||||||| Sbjct 3176099 ATCCCCTCAACACAAGCAAAGGCGACTAACCGCTCAGCAAA 3176059 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731723466577600