Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sesamum_20indicum_20[refseq_20GCF_5F000512975.1_202014-01-06] 16,236 sequences; 275,059,498 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq2 134 4e-26 seq3 132 1e-25 seq15 129 2e-24 seq11 122 3e-22 seq8 120 9e-22 seq13 111 5e-19 seq6 109 2e-18 seq12 105 2e-17 seq9 96.9 1e-14 >seq2 Length=18500646 Score = 134 bits (148), Expect = 4e-26 Identities = 293/424 (69%), Gaps = 26/424 (6%) Strand=Plus/Minus Query 288939 AAATCCATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAACC 288998 |||||||||||| || || | ||||||| || || || |||||||||||| || Sbjct 3972028 AAATCCATCCATTTCAGTCAAGAGCTGATTAATAGTCTGCTCTCTTTCATCATTT---CC 3971972 Query 288999 TCTTGAATCACCCGAATC--GCTCCtttttt--tACCAACAGCATCAATTTCGTCAATGA 289054 | |||| | || || ||| ||| |||| |||||||||||||| ||||||| Sbjct 3971971 CC------CACCA-AGTCCTGCCCCTCTTTGCCTACCCACAGCATCAATTTCATCAATGA 3971919 Query 289055 AAATCACACACGGAGAATTTTGTC-TCGCAATTGCAAATAATTCTCTTACACGGGATGCT 289113 | | | || |||| ||| | | | || | |||| || || || || | || ||| Sbjct 3971918 ACACAATGCAAGGAG-CTTTAGACTTGGCCTTATCAAACAAATCCCTCACTCTTGAAGCT 3971860 Query 289114 CCAAGACCAACATACATTTCTACAAATTCAGAAGCGGATACTTG-AATGAATGTTACATT 289172 |||| ||| ||| ||| |||||||| || || || | || | || ||| | ||| Sbjct 3971859 CCAACACCTACAAACAACTCTACAAACTCTGATGCAG-CACAGGAAAAGAACGGTACCCC 3971801 Query 289173 TGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAA 289232 |||||| || || |||||||| |||| ||| ||||| || || || ||||| || | || Sbjct 3971800 TGCTTCACCAGCCACTGCCCTTGCCAAAAGGGTCTTTCCAGTACCGGGTGGACCAACCAA 3971741 Query 289233 TAGAACTCCCTTTGGTACTTTTGC-CCCA--GCAGACTTATATTTCTCAGGGCTCTTTAA 289289 ||| || || || | |||||| |||| |||| | || || |||||| | || || Sbjct 3971740 AAGACAACCTTTCGGAATTTTTGCACCCAATGCAG---TGTACTTATCAGGGTTTTTCAA 3971684 Query 289290 AAATTCTACAATTTCCT-CAAGTTCATATTTTGCCTCATCACATCCTGCTACATCAGCAA 289348 || || || | || | ||| | || ||||||| | |||| |||||||| ||||||| Sbjct 3971683 GAAATCAACTACCTCTTGCAACTCCA-ATTTTGCTTGATCAGCCCCTGCTACGTCAGCAA 3971625 Query 289349 AAGT 289352 | || Sbjct 3971624 ATGT 3971621 >seq3 Length=24928530 Score = 132 bits (146), Expect = 1e-25 Identities = 229/329 (70%), Gaps = 8/329 (2%) Strand=Plus/Minus Query 302553 ATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGT 302612 |||||| || ||| || || |||||| ||| | || || | ||||||||| ||||| Sbjct 18840116 ATCATATTTAACCATGATATCCTCCATAGCCTTCACTAGTCGCCTCTGAATATATCCAGT 18840057 Query 302613 TGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAA 302672 ||| ||||| || || ||||| || ||||| | | |||||||| ||||||||||| Sbjct 18840056 CTCAGAAGTTTTCACTGCAGTATCTATAAGACCTTCTCTCCCACCCATGGCATGGAAGAA 18839997 Query 302673 TAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGG 302732 | ||||| || | |||| || | | ||| |||| || || ||||| ||| || Sbjct 18839996 GAACTCTTGAGGAGTCAATCCCCGAAGATATGAGTTCTCCACAAACCCACGACTCTCTGG 18839937 Query 302733 ---CGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCT-CATAGCCGTATGGGA 302788 |||| || |||||| |||||||| || || | | ||| | | || | || | Sbjct 18839936 ACCAAAATCATC---CTTGGTGAAGTGTGGTAGTGTAC-GATCTACGAATCCAAAAGGAA 18839881 Query 302789 TACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCGAAATATTTAAAT 302848 | || || || ||||| ||||| || |||| || | | ||||||| || ||||| | | Sbjct 18839880 TTCGTTTGCCTTCAACATTCTGTTGCCCCACACATGCAGTCATCTGAGAGATATTGATAA 18839821 Query 302849 CACTGCCCTTGGAGCCAGCATTTACCATA 302877 ||| ||||| || || ||| | |||||| Sbjct 18839820 AACTTCCCTTAGATCCTGCAGTAACCATA 18839792 >seq15 Length=10047770 Score = 129 bits (142), Expect = 2e-24 Identities = 234/336 (70%), Gaps = 6/336 (2%) Strand=Plus/Minus Query 302545 ACGGTCATATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACGCTGAATA 302604 || ||| |||||| || ||| || || ||||| || | ||||| | |||||| Sbjct 2858796 ACAGTCCCATCATACTTAACCATGATATCCTCCATTGCTTTTACCAAACGCCTCTGAATG 2858737 Query 302605 TAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACCCATAGCA 302664 || || || || ||||| || |||||||| |||||||| | | ||||||||||||| Sbjct 2858736 TACCCGGTCTCCGAAGTTTTCACTGCTGTATCTATTAGACCTTCCCTACCACCCATAGCA 2858677 Query 302665 TGGAAGAATAGCTCTTCCGGTCGT-AGCCCCCCAATAAAGGAGCTCTCAACGAAACCACG 302723 |||||||| | ||| | || ||| | |||| || | | || | || || || ||||| Sbjct 2858676 TGGAAGAAGAACTCCTGAGG-CGTCAAACCCCTAAGATATGAATTTTCTACAAACCCACG 2858618 Query 302724 CGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCAT--AGCCG 302781 ||| || || || ||||| ||||||||||| || | | ||| || | || Sbjct 2858617 ACTCTCTGGACCATAATCATCTTTGGTGAAGTGTGGCAGAGTAC-GATCT-ATGAATCCA 2858560 Query 302782 TATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCGAAATA 302841 | || || || || || ||||| |||||||| |||| || | | ||||||| ||||| Sbjct 2858559 AAAGGAATTCGTTTGCCTTCAACATTCTGCTGCCCCACACAAGCAGTCATCTGAGAAATG 2858500 Query 302842 TTTAAATCACTGCCCTTGGAGCCAGCATTTACCATA 302877 || | | ||| ||||| || || ||| | |||||| Sbjct 2858499 TTGATAAAACTTCCCTTAGATCCTGCAGTAACCATA 2858464 >seq11 Length=15446199 Score = 122 bits (134), Expect = 3e-22 Identities = 221/318 (69%), Gaps = 4/318 (1%) Strand=Plus/Plus Query 289028 tACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTG 289087 |||| | ||||| ||||| || ||||| || | || || ||| ||| || || | Sbjct 14108644 TACCTATTGCATCTATTTCATCGATGAATATAATACTTGGTGAACATTGCCTTGCCTCTT 14108703 Query 289088 CAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAG 289147 |||||| | | || | ||||| ||||| |||||| ||||||| | || || || Sbjct 14108704 GAAATAAGTTGCGGACCCTGGATGGTCCAACTCCAACAAACATTTCCATGAAATCTGACC 14108763 Query 289148 CGGATACTTGAATGAATGT-TACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTC 289206 |||||| | || ||| | |||| | ||| || || ||| | || ||||||||| Sbjct 14108764 CGGATA-TGGAGAGAAAGGGTACACCAGATTCTCCGGCAGTTGCTTTAGCGAGAAGTGTC 14108822 Query 289207 TTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTG-CCCCAGCAGA 289265 || ||||| ||||| || || | | ||| | || ||||| | ||||| ||||| || | Sbjct 14108823 TTTCCTGTCCCAGGAGGGCCAACAAGAAGAGCACCTTTTGGAATTTTTGCCCCCAACA-A 14108881 Query 289266 CTTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTC 289325 || ||| || | || |||||| ||| | |||| ||| | ||| | ||||||||| Sbjct 14108882 CTCATACTTTTTTGGATTCTTTAGAAAGTGCACAAACTCCATGATTTCTTGTTTTGCCTC 14108941 Query 289326 ATCACATCCTGCTACATC 289343 |||||| || |||||||| Sbjct 14108942 ATCACAACCAGCTACATC 14108959 >seq8 Length=21523998 Score = 120 bits (132), Expect = 9e-22 Identities = 129/171 (75%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 251404 GCGATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAGC 251463 ||||| | ||||| | | ||| ||||||| |||||||||||| | |||| | ||| Sbjct 8106941 GCGATCAATCCACATTGCTCACAAACATGGATCCTGTAAGCATCACTTTGGTCAAACAGC 8106882 Query 251464 CGACCCTTGGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCG 251523 | | || |||| ||| ||||| |||| |||||||||||| || ||||||||||| Sbjct 8106881 CTTTCTTTTAGGAAGTGAGTGGCACCATGTGCAATCATACAATCTCGTTCCATTTCACCA 8106822 Query 251524 AAACGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGTGAGA 251574 || || ||||||||||| |||| || || || ||||| || | ||||||| Sbjct 8106821 AATCGGAGACCACCATCACGAGACCGGCCTTCTGCAGGTTGTCTAGTGAGA 8106771 >seq13 Length=5050363 Score = 111 bits (122), Expect = 5e-19 Identities = 363/553 (66%), Gaps = 17/553 (3%) Strand=Plus/Plus Query 133081 TATGTTCCCAATTAAGGACGACGAGATTTGGCAGATGTATAAAAAA-CAGCAAGATTTAT 133139 ||||||||| ||| | || || | ||| ||||||| |||||| ||| ||| || | Sbjct 3175644 TATGTTCCCCATTCACTACCCACAGGTCTGGGAGATGTACAAAAAAGCAG-AAGCTTCCT 3175702 Query 133140 TTTGGACTTCAACTGAAGTAGATTTATCCAAAGACCCAGCCCACTGGGAAGCCCTTACTG 133199 | ||||| | ||||| |||||||| | |||| ||| ||||||||||| || Sbjct 3175703 TCTGGACCGCCGAGGAAGTTGATTTATCTCAGGACCTCCGCCATTGGGAAGCCCTCACCT 3175762 Query 133200 GGGATGAAAAACATTTTATTTCTATGATTT--TAGCGTTTTTTGCTGCGAGTGATGGTAT 133257 || || || ||||| | | | | | | || || |||||||| |||||||| Sbjct 3175763 CCGACGAGAAGCATTTCGT--CAAACACGTCCTCGCCTTCTTTGCTGCCTCCGATGGTAT 3175820 Query 133258 TGTTCTTGAAAATTTAGGAACACGGTTTATGGGAGAAGTTCAACTGGCCGAAGCCCGTGC 133317 ||| | |||||| | | ||| || ||| ||| || || | |||| |||||||| Sbjct 3175821 CGTTTTGGAAAATCTCGCTGGACGCTTCATGAAAGAGGTCCAGATCTCCGAGGCCCGTGC 3175880 Query 133318 CTTTTATGGGCTACAGATTGCGATGGAAAATATCCATTCTATCACATATTCTACTCTAAT 133377 ||| || || | || ||||| || || || || ||||| | || | ||| | Sbjct 3175881 CTTCTACGGCTTCCAAATTGCCATTGAGAACATTCATTCCGAGATGTACAGTCTTCTGCT 3175940 Query 133378 TGATACTTACATCAAAGATACCGTCCAGAAGCACAAACTATTCAACGCCATTAGCGA-AT 133436 ||| ||||||||||||| | | | |||| || | || ||| ||| ||| | || Sbjct 3175941 TGAGTCTTACATCAAAGACTCGGCCGAGAAAAACCACCTCTTCCGCGCAATT-GAGACCG 3175999 Query 133437 TTCCTTGTATTAAAAAGAAATCTGACTGGGCTATTAAATGGATCCAGGACAAGCGTGCGA 133496 ||||||| | ||||||| | | ||||| || ||||| | | | | || Sbjct 3176000 TTCCTTGCGTGGAAAAGAAGGCCAAGTGGGCCATGCGCTGGATTGATGGC-----TCTGA 3176054 Query 133497 GT--TTTGCTACTCGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAtttttttC-AGTGGTG 133553 | |||||| || | || || |||||| || ||||| || |||||| | || | Sbjct 3176055 ATCCTTTGCTGAGCGGTTAGTCGCCTTTGCTTGTGTTGAGGGGATATTTTTCTCGGGGAG 3176114 Query 133554 CGTTCTGCTCTATTTTTTGGCTTAAAAAGCGTGGTATTCTACCTGGACTGTGTTTTTCTA 133613 | |||||| | || |||||| | |||||||| || || | || || || ||| || | Sbjct 3176115 C-TTCTGCGCCATATTTTGGTTGAAAAAGCGCGGGATGATGCCGGGCTTGACTTTCTCCA 3176173 Query 133614 ACGAACTTATTTC 133626 | ||| | ||||| Sbjct 3176174 ATGAATTAATTTC 3176186 >seq6 Length=25289714 Score = 109 bits (120), Expect = 2e-18 Identities = 341/515 (66%), Gaps = 30/515 (6%) Strand=Plus/Minus Query 288850 CTATCAAACCTACCAGAACGAGTTAATGCTGGGTCTAATATATCGGCTCTGTTTGTTGCT 288909 ||||||||||| |||| | || || | ||| | ||||| || | ||| |||||| Sbjct 23328620 CTATCAAACCTTCCAGGTCTCAACAAGGCAGAGTCAAGAATATCTGCACGGTTAGTTGCT 23328561 Query 288910 GCCAATACAACAATAGATTCGGT--TTGCTT-AAATCCATCCATACTTGTTAAAATTTGA 288966 || | ||||| ||| |||| || ||| ||| |||||||| ||| || | || Sbjct 23328560 GCAATTACAATTATAC---CGGTATTTCCTTCAAAACCATCCATTTCTGTCAAGAGCTGG 23328504 Query 288967 TTAAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAATCACCCGAATC-GCTCCtttt 289025 || || || || ||||||||||||||| |||| |||| | | | |||| || Sbjct 23328503 TTCAGGGTCTGCTCCCTTTCATCATTT---CCTC------CACCAATACCAGTTCCTCTT 23328453 Query 289026 t--ttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGC- 289082 | ||||||||||||||||| |||| || | | || |||| ||||| |||| Sbjct 23328452 TGACGCCCAACAGCATCAATTTCATCAACAAAGACAATGCAGGGAGCATTTTCCTTCGCC 23328393 Query 289083 -AATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATT 289141 ||| ||| | || | || || || || |||| |||||| |||| || ||||| | Sbjct 23328392 TTCTTGAAAAGA--TCACGGACCCGTGAAGCCCCAACTCCAACAAACATCTCAACAAACT 23328335 Query 289142 CAGAAGCGGATACTTGA-ATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGA 289200 ||||| | || | | || | || | ||| ||||| || || | ||| | || || Sbjct 23328334 CAGAACCTGA-AATCGAGAAAAAAGGAACACCGGCTTCACCAGCAATAGCCTTGGCTAGC 23328276 Query 289201 AGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGG--TACTTTTGCCC 289258 | ||||| || || || || || || | | ||||||||||| || ||| ||| Sbjct 23328275 AAGGTCTTTCCAGTACCTGGCGGACCAACAAGAAGAACTCCCTTAGGAATACGAGCACCC 23328216 Query 289259 -CAGCAGACTTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATAT 289317 |||||| || | ||||||| |||| || ||||| || | ||| || || | Sbjct 23328215 ACAGCAG---TAAACCTCTCAGGCTTCTTCAAGAATTCCACCACCTCCATAAAATCTTGC 23328159 Query 289318 TTTGCCTCATCACATCCTGCTACATCAGCAAAAGT 289352 || || ||||| ||| || |||||| | || || Sbjct 23328158 TTGGCTTCATCTACTCCAGCAACATCATCGAAGGT 23328124 Score = 96.9 bits (106), Expect = 1e-14 Identities = 105/137 (77%), Gaps = 2/137 (1%) Strand=Plus/Minus Query 289086 TGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGA 289145 |||||| | ||||| ||||| |||||||| | ||| ||||||| ||||||||||||| Sbjct 7558638 TGCAAAGAGGTCTCTGACACGAGATGCTCCCATACCGACATACAGTTCTACAAATTCACT 7558579 Query 289146 AGC-GGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTG 289204 || | | | || ||||| | |||| ||||| || || || || | || ||||||| Sbjct 7558578 TGCTGAACAACTG-ATGAAAGGAACATCAGCTTCTCCAGCAACAGCTTTTGCTAGAAGTG 7558520 Query 289205 TCTTACCTGTTCCAGGT 289221 ||||||||||||| ||| Sbjct 7558519 TCTTACCTGTTCCTGGT 7558503 >seq12 Length=6373461 Score = 105 bits (116), Expect = 2e-17 Identities = 120/161 (75%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 251413 CCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAGCCGACCCTTG 251472 ||||||| | ||| ||||||| |||||||||||| | |||| | | || |||| Sbjct 4236871 CCACACTGTTCACAGACATGGATCCTGTAAGCATCACTTTGGTCAAACAACCTTTCCTTT 4236930 Query 251473 GTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGA 251532 ||| ||| || || |||| |||||| ||||| || ||||||||||| || || ||| Sbjct 4236931 AAAAAGTGAGCAGCGCCATGTGCAATCATGCAATCTCGTTCCATTTCACCAAATCGGAGA 4236990 Query 251533 CCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGTGAG 251573 |||||||| |||| || || || ||||| || | |||||| Sbjct 4236991 CCACCATCACGAGACCGTCCTTCCGCAGGTTGTCTAGTGAG 4237031 >seq9 Length=12411895 Score = 96.9 bits (106), Expect = 1e-14 Identities = 84/104 (81%), Gaps = 3/104 (3%) Strand=Plus/Minus Query 156050 ACCATTCCTCTTGCCACCC---TGATCTACATACCGAGCAGTCTTATTGAAGACACCTAG 156106 ||| ||||||||||||||| ||||| ||||| ||||| || | |||||| || | || Sbjct 8673633 ACCTTTCCTCTTGCCACCCCCTTGATCCACATATCGAGCTGTGTCATTGAACACTCGAAG 8673574 Query 156107 CATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATAT 156150 ||| |||| ||| ||||||||||| ||||| ||||| || |||| Sbjct 8673573 CATTGGAACAATGCCATTGGAAGTTCCATTTGTTCCACGTATAT 8673530 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471511426983532