Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sesamum_20indicum_20[refseq_20GCF_5F000512975.1_202014-01-06] 16,236 sequences; 275,059,498 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq13 156 5e-32 seq15 147 3e-29 seq53 86.0 8e-11 >seq13 Length=5050363 Score = 156 bits (172), Expect = 5e-32 Identities = 217/299 (73%), Gaps = 10/299 (3%) Strand=Plus/Minus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 || || |||||||| ||||| || ||||||||||| ||||| | |||| | | ||| Sbjct 3175919 GAATGAATGTTCTCAATGGCAATTTGGAAGCCGTAGAAGGCACGGGCCTCGGAGATCTGG 3175860 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 ||||| |||||||| || || || || || || ||||| || ||| ||| || || Sbjct 3175859 ACCTCTTTCATGAAGCGTCCAGCGAGATTTTCCAAAACGATACCATCGGAGGCAGCAAAG 3175800 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGTGGACG 869812 || || |||||||| |||| || || ||||||| | |||| | |||| ||| || Sbjct 3175799 AAGGCGAGGACGTGTTTGACGAAATGCTTCTCGTCGGAGGTGAGGGCTTCCCAATGG-CG 3175741 Query 869813 GTGTCGGCGCTGAG----GTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTT 869868 | || ||||| || || |||||||||||||||| || || || || ||||| Sbjct 3175740 G---AGGTCCTGAGATAAATCAACTTCCTCGGCGGTCCAGAAGGAAGCTTCTGCTTTTTT 3175684 Query 869869 GTACATCTCCCATACTTGCTGGTAGCGGATAGGGAAGAGGACA-AAGCGGTTGGGGTTG 869926 |||||||||||| || || ||||| | || ||||| | ||| ||||||| ||||||| Sbjct 3175683 GTACATCTCCCAGACCTGTGGGTAGTGAATGGGGAACA-TACAGAAGCGGTCGGGGTTG 3175626 Score = 131 bits (144), Expect = 2e-24 Identities = 187/264 (71%), Gaps = 6/264 (2%) Strand=Plus/Minus Query 869169 CACTATGCGAACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGA 869228 ||| |||| ||||||| || || || | ||| ||| || | | ||| ||||| | Sbjct 3176209 CACAATGCAAACCTTCATCTCGCGAAATTAATTCATTGGAGAAAGTCAAGCCCGGCATCA 3176150 Query 869229 GGCCGCGCTTCTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGA 869288 |||||||| || | |||||| ||||||||||| || ||||||||||| || ||||| | Sbjct 3176149 TCCCGCGCTTTTTCAACCAAAATATGGCGCAGAAGCTCCCCGAGAAAAATATCCCCTCAA 3176090 Query 869289 CGGCGGCAAAGCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTTGATCCACT 869348 | |||||| ||| | |||||| ||||||| || ||| || ||||| Sbjct 3176089 CACAAGCAAAGGCGACTAACCGCTCAGCAAAGGATTCAGAGCCATC------AATCCAGC 3176036 Query 869349 TCATCGCCCAGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGT 869408 ||| ||||| | |||||| || ||| | || || || || || ||||| ||||||| Sbjct 3176035 GCATGGCCCACTTGGCCTTCTTTTCCACGCAAGGAACGGTCTCAATTGCGCGGAAGAGGT 3175976 Query 869409 GGTCCTTTTCGGCCGGGTCCTTGA 869432 ||| || ||||||| ||| |||| Sbjct 3175975 GGTTTTTCTCGGCCGAGTCTTTGA 3175952 >seq15 Length=10047770 Score = 147 bits (162), Expect = 3e-29 Identities = 209/294 (71%), Gaps = 0/294 (0%) Strand=Plus/Plus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 || ||||||||||| ||||| ||||| || || || ||||| | |||| | || || Sbjct 1769606 GAATGGATGTTCTCAATGGCAATCTGAAACCCATAGAAGGCACGAGCCTCGGAGACCTGA 1769665 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 || ||||||||||| || || || |||||||| || ||||| || ||||||||| Sbjct 1769666 ACTTCCTTCATGAAGCGTCCAGCAAGGTTCTCCAAAACAATGCCATCAGAGGCGGCGAAG 1769725 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGTGGACG 869812 || || || ||||| ||||| || || |||||| |||| |||||||| | Sbjct 1769726 AAGGCGAGAACGTGTTTGATGAAATGCTTCTCGTCAGAAGTGAGGTTTTCCCAGTGGCGG 1769785 Query 869813 GTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGTAC 869872 ||| | | ||||| ||||| || ||||||| || || ||||| || |||||| Sbjct 1769786 AGGTCTTGGGACAAATCCACTTCCTCCGCAGTCCAGAAGGACGCTTCGGCTTTCTTGTAC 1769845 Query 869873 ATCTCCCATACTTGCTGGTAGCGGATAGGGAAGAGGACAAAGCGGTTGGGGTTG 869926 || ||||| | ||| |||| |||| ||||| | | ||||||| ||||||| Sbjct 1769846 ATTTCCCAGATTTGTGGGTACTGGATGGGGAACATGCAGAAGCGGTCGGGGTTG 1769899 Score = 114 bits (126), Expect = 2e-19 Identities = 184/265 (69%), Gaps = 6/265 (2%) Strand=Plus/Plus Query 869174 TGCGAACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCG 869233 ||| |||| || || || ||| | ||||||| || | | || ||||| | || Sbjct 1769321 TGCAAACCCTCATCCCGTGAGATTAATTCGTTGGAGAAAGTTAAACCCGGCATCAAACCA 1769380 Query 869234 CGCTTCTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCG 869293 |||||||| |||||||| || || ||||| || ||||||||||| ||||| || || Sbjct 1769381 CGCTTCTTCAGCCAAAATATTGCACAGAAGCTTCCCGAGAAAAATATGCCTTCCACACAA 1769440 Query 869294 GCAAAGCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTTGATCCACTTCATC 869353 ||||| ||||| | || |||||||| || || ||| || |||||| | Sbjct 1769441 GCAAATCCGATTAATCGTTCGGCAAAAGTTTCAGAGCCATC------GATCCAGCGTAAA 1769494 Query 869354 GCCCAGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCC 869413 ||||| | ||||| ||| ||| | || || || ||||| |||||||| || || | Sbjct 1769495 GCCCATTTAGCCTTCTTCTCCACACATGGGACAGTCTCGATTGCGCGAAAAAGCATGTTC 1769554 Query 869414 TTTTCGGCCGGGTCCTTGACATAGG 869438 || ||||||| ||||| | ||||| Sbjct 1769555 TTCTCGGCCGAATCCTTTATATAGG 1769579 >seq53 Length=249015 Score = 86.0 bits (94), Expect = 8e-11 Identities = 144/204 (71%), Gaps = 6/204 (3%) Strand=Plus/Minus Query 1254348 GCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCGT- 1254406 ||||| || || ||| | || | ||||||||||||||||||||| | ||| || Sbjct 84282 GCCAGCTCCCCCGGCAACACCAATCTCACGGCGGTCTGGATCTCGCGAGAAGTGATGGTC 84223 Query 1254407 -GTTGCGCTTGTTCGAGTGCGCCAGACG-GCCGGCCTCGGTGCCGATGCGGTCGATCATG 1254464 ||| |||||| || |||| ||||| | || | | | ||| || |||| ||| Sbjct 84222 GGTT--TCTTGTTGTAGCGCGCGAGACGCGACGCCTCCTGCGCCAAT-TTCTCGAAGATG 84166 Query 1254465 TCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGC 1254524 ||||||| || |||||||| ||| | |||| | ||||| || | ||| ||||| Sbjct 84165 TCGTTGATGAAGCTGTTCATGATTCCCATGGCCTTGCTCGAGATCCCGATGTCAGGGTGG 84106 Query 1254525 ACCTGCTTGAGCACCTTGTAGATG 1254548 ||||| || ||||||||| ||||| Sbjct 84105 ACCTGTTTCAGCACCTTGAAGATG 84082 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6105806797806812