Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sesamum_20indicum_20[refseq_20GCF_5F000512975.1_202014-01-06] 16,236 sequences; 275,059,498 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq13 147 3e-29 seq15 132 8e-25 seq53 118 2e-20 seq11 98.7 2e-14 >seq13 Length=5050363 Score = 147 bits (162), Expect = 3e-29 Identities = 204/286 (71%), Gaps = 6/286 (2%) Strand=Plus/Minus Query 794379 GCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAA 794438 ||| ||||| | |||||||| || | |||||| ||||| ||||| || ||||||||||| Sbjct 3176160 GCCCGGCATCATCCCGCGCTTTTTCAACCAAAATATGGCGCAGAAGCTCCCCGAGAAAAA 3176101 Query 794439 GATGCCCTCGACGGCGGCAAAGCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTT 794498 || ||||| || |||||| |||| | |||||| ||||| | || ||| || Sbjct 3176100 TATCCCCTCAACACAAGCAAAGGCGACTAACCGCTCAGCAAAGGATTCAGAGCCATC--- 3176044 Query 794499 GTTGATCCACTTCATCGCCCACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGC 794558 ||||| ||| ||||||| ||||| || ||| | || || || || || || Sbjct 3176043 ---AATCCAGCGCATGGCCCACTTGGCCTTCTTTTCCACGCAAGGAACGGTCTCAATTGC 3175987 Query 794559 GCGAAAGAGGTGGTCCTTCTCGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTA 794618 ||| |||||||||| |||||| ||| ||| |||| ||| | || | || || ||| Sbjct 3175986 GCGGAAGAGGTGGTTTTTCTCGGCCGAGTCTTTGATGTAAGACTCAAGCAGAAGACTGTA 3175927 Query 794619 GGTCTCTGAGTGGATGTTTTCGATGGCGATCTGGAAGCCATAAAAG 794664 |||| || || ||||| || ||||| || |||||||| || ||| Sbjct 3175926 CATCTCGGAATGAATGTTCTCAATGGCAATTTGGAAGCCGTAGAAG 3175881 Score = 140 bits (154), Expect = 5e-27 Identities = 183/253 (72%), Gaps = 8/253 (3%) Strand=Plus/Minus Query 796149 GGCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCC 796208 |||||||| | |||||||| ||||||||||| || || || || || ||||| || Sbjct 3175875 GGCCTCGGAGATCTGGACCTCTTTCATGAAGCGTCCAGCGAGATTTTCCAAAACGATACC 3175816 Query 796209 GTCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAG 796268 ||| ||| || || |||||||||||||| |||| || || ||||||| | |||| Sbjct 3175815 ATCGGAGGCAGCAAAGAAGGCGAGGACGTGTTTGACGAAATGCTTCTCGTCGGAGGTGAG 3175756 Query 796269 CGAGACCCAGTGGACCGTGTCGGCGCCGAGGT----CGACCTCCTCGGCGGTCCAAAAGG 796324 | |||| ||| ||| | ||| | | || |||||||||||||| |||| Sbjct 3175755 GGCTTCCCAATGGCGGAGGTC----CTGAGATAAATCAACTTCCTCGGCGGTCCAGAAGG 3175700 Query 796325 AGGCCTCGGCCTTTTTGTACATCTCCCATATCCGTTGGTAGCGGATGGGGAACAGAACAA 796384 | || || || ||||||||||||||||| | | || ||||| | |||||||||| | | Sbjct 3175699 AAGCTTCTGCTTTTTTGTACATCTCCCAGACCTGTGGGTAGTGAATGGGGAACATACAGA 3175640 Query 796385 AGCGATTGGGGTT 796397 |||| | |||||| Sbjct 3175639 AGCGGTCGGGGTT 3175627 >seq15 Length=10047770 Score = 132 bits (146), Expect = 8e-25 Identities = 200/285 (70%), Gaps = 6/285 (2%) Strand=Plus/Plus Query 794380 CCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAG 794439 || ||||| | || |||||||| |||||||| || |||||||| || ||||||||||| Sbjct 1769366 CCCGGCATCAAACCACGCTTCTTCAGCCAAAATATTGCACAGAAGCTTCCCGAGAAAAAT 1769425 Query 794440 ATGCCCTCGACGGCGGCAAAGCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTG 794499 ||||| || || ||||| |||| | || ||||||||||| || ||| || Sbjct 1769426 ATGCCTTCCACACAAGCAAATCCGATTAATCGTTCGGCAAAAGTTTCAGAGCCATC---- 1769481 Query 794500 TTGATCCACTTCATCGCCCACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCG 794559 |||||| | ||||| | ||||| ||| ||| | || || || ||||| ||| Sbjct 1769482 --GATCCAGCGTAAAGCCCATTTAGCCTTCTTCTCCACACATGGGACAGTCTCGATTGCG 1769539 Query 794560 CGAAAGAGGTGGTCCTTCTCGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAG 794619 ||||| || || ||||||| ||| ||||| | |||| || | | || || Sbjct 1769540 CGAAAAAGCATGTTCTTCTCGGCCGAATCCTTTATATAGGATTCAAGCAAAAGACTATAC 1769599 Query 794620 GTCTCTGAGTGGATGTTTTCGATGGCGATCTGGAAGCCATAAAAG 794664 |||| || |||||||| || ||||| ||||| || ||||| ||| Sbjct 1769600 ATCTCGGAATGGATGTTCTCAATGGCAATCTGAAACCCATAGAAG 1769644 Score = 127 bits (140), Expect = 3e-23 Identities = 177/248 (71%), Gaps = 0/248 (0%) Strand=Plus/Plus Query 796150 GCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCG 796209 ||||||| || || || |||||||||||||| || || |||||||| || ||||| Sbjct 1769651 GCCTCGGAGACCTGAACTTCCTTCATGAAGCGTCCAGCAAGGTTCTCCAAAACAATGCCA 1769710 Query 796210 TCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAGC 796269 || ||||||||| |||||||| ||||| ||||| || || |||||| |||| Sbjct 1769711 TCAGAGGCGGCGAAGAAGGCGAGAACGTGTTTGATGAAATGCTTCTCGTCAGAAGTGAGG 1769770 Query 796270 GAGACCCAGTGGACCGTGTCGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGAGGCC 796329 |||||||| ||| | | || || ||||| || ||||| ||||| || Sbjct 1769771 TTTTCCCAGTGGCGGAGGTCTTGGGACAAATCCACTTCCTCCGCAGTCCAGAAGGACGCT 1769830 Query 796330 TCGGCCTTTTTGTACATCTCCCATATCCGTTGGTAGCGGATGGGGAACAGAACAAAGCGA 796389 ||||| || |||||||| ||||| || || |||| |||||||||||| ||||| Sbjct 1769831 TCGGCTTTCTTGTACATTTCCCAGATTTGTGGGTACTGGATGGGGAACATGCAGAAGCGG 1769890 Query 796390 TTGGGGTT 796397 | |||||| Sbjct 1769891 TCGGGGTT 1769898 >seq53 Length=249015 Score = 118 bits (130), Expect = 2e-20 Identities = 174/242 (72%), Gaps = 6/242 (2%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 || ||||||| || |||||||| || || |||||||||||| | ||||| || || ||| Sbjct 84326 TGAACTTGGTCACAGCCTTGGTTCCTTCAGAGACGGCGTGCTTCGCCAGCTCCCCCGGCA 84267 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGT--GTTGCGCTTGTTAGT 1485587 | || | ||||||||||||||||||||| | ||| || ||| |||||| Sbjct 84266 ACACCAATCTCACGGCGGTCTGGATCTCGCGAGAAGTGATGGTCGGTT--TCTTGTTGTA 84209 Query 1485588 GCGCGCCAGGCG-GCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGT 1485646 |||||| || || | || | | | ||| || |||| |||||||||| || || Sbjct 84208 GCGCGCGAGACGCGACGCCTCCTGCGCCAAT-TTCTCGAAGATGTCGTTGATGAAGCTGT 84150 Query 1485647 TCATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCT 1485706 ||||||| ||| | ||| | ||||| || | ||| ||||| ||||| || ||||||| Sbjct 84149 TCATGATTCCCATGGCCTTGCTCGAGATCCCGATGTCAGGGTGGACCTGTTTCAGCACCT 84090 Query 1485707 TG 1485708 || Sbjct 84089 TG 84088 >seq11 Length=15446199 Score = 98.7 bits (108), Expect = 2e-14 Identities = 167/238 (70%), Gaps = 8/238 (3%) Strand=Plus/Minus Query 1485475 TTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATGATC 1485534 || || ||||||||||||||||| || || |||||| |||||| || || | | | | Sbjct 12307045 TTCGTAACGGCCTTGGTACCCTCGGAAACAGCGTGCTTGGCCAACTCCCCAGGAAGCACC 12306986 Query 1485535 AGGCGCACGGCGGTCTGGATCTCGCGG---GTGCCGATCGTGTTGCGCTTGTTAGTGCGC 1485591 | | ||||| ||||| ||||| ||| ||| | ||| || |||||| |||| Sbjct 12306985 AATCTGACGGCAGTCTGAATCTCCCGGGAAGTGATGGTCGGCTT---CTTGTTGTAGCGC 12306929 Query 1485592 GCCAGGCG-GCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCAT 1485650 |||| || | || | | | ||| || |||| |||||||||| || |||||| Sbjct 12306928 GCCAATCGCGACGCCTCCTGCGCCAAT-TTCTCGAATATGTCGTTGATGAAGCTGTTCAT 12306870 Query 1485651 GATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708 ||| ||| | ||| | ||||| || | ||| ||||| |||||||| ||||||||| Sbjct 12306869 GATACCCATAGCCTTGCTAGAGATACCGATGTCAGGGTGAACCTGCTTCAGCACCTTG 12306812 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7914519302627604