Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sesamum_20indicum_20[refseq_20GCF_5F000512975.1_202014-01-06] 16,236 sequences; 275,059,498 total letters Query= NC_025456.1 Length=46547 Score E Sequences producing significant alignments: (Bits) Value seq16236 600 4e-167 seq8 329 1e-85 seq6 161 3e-35 seq2 136 1e-27 seq3 118 3e-22 >seq16236 Length=153324 Score = 600 bits (664), Expect = 4e-167 Identities = 731/984 (74%), Gaps = 12/984 (1%) Strand=Plus/Minus Query 19510 TAACTGGGTCACTTCGACCAACAACCGTCTTTATGTTGGGTGGTTTGGAACACTGATGAT 19569 ||||||| | || ||| | ||||||||||| |||| |||||||| ||||||| Sbjct 1388 TAACTGGATAACCAGCACCGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGAT 1329 Query 19570 TCCGTGTCTCCTTGCAGCCACCATCTGC-TTCATTATTGCATTCATTGCGGCTCCACCAG 19628 || | || ||| || | |||| || |||||||| |||||||| || || |||| Sbjct 1328 CCC-TACCTTATTGACCGCAACTTCTGTATTTATTATTGCCTTCATTGCTGCCCCTCCAG 1270 Query 19629 TTGACATTGATGGCATCCGCGAACCCGTATCCGGTAGCCTT-CTTTATGGAAACAACATC 19687 | || |||||||| || || ||||| || || || | | || ||||| |||||||| || Sbjct 1269 TAGATATTGATGGTATTCGTGAACCTGTTTCTGG-ATCTTTACTTTACGGAAACAATATT 1211 Query 19688 ATATCGGGAGCCGTCGTTCCGAG--CAGCAATGCCATCGGACTACACTTCTACCCAATTT 19745 || || || ||| | |||| | | ||| || ||||| | ||||| |||||||||| Sbjct 1210 ATCTCAGGTGCCATTATTCCTACTTCTGCA--GCTATCGGTTTGCACTTTTACCCAATTT 1153 Query 19746 GGGAAGCTAGTTCACTTGATGAATGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCT 19805 ||||||| || ||||||||||| | |||||||| || || | |||| | || Sbjct 1152 GGGAAGCAGCATCCGTTGATGAATGGTTATACAACGGTGGTCCTTATGAACTAATTGTTC 1093 Query 19806 TCCACTTCCTCATTGGCATCTATGCTTACATGGGACGAGAGTGGGAACTTAGCTATCGAC 19865 | |||||| | |||| | | ||||||||| || |||||||||||||| | || | Sbjct 1092 TACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCGTC 1033 Query 19866 TAGGAATGAGGCCTTGGATTTGTGTTGCCTACTCTGCTCCGGTTGCAGCCGCCTCTGCGG 19925 | || ||| | ||||||||| |||||| || || ||||| |||||||| || | || | Sbjct 1032 TGGGTATGCGACCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACCGCTG 973 Query 19926 TCTTTCTCG-TCTACCCGTTTGGTCAGGGTAGCTTCTCCGATGCTATGCCTTTGGGTATC 19984 | ||||| | ||||||| | ||||| || || || || |||| ||||||| | || || Sbjct 972 T-TTTCTTGATCTACCCAATCGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATT 914 Query 19985 TCGGGTACGTTCAACTACATGTTGGTATTCCAAGCCGAACATAACATTCTCATGCACCCG 20044 || ||||| ||||||| |||| | |||||||| || || || ||||| || |||||||| Sbjct 913 TCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCA 854 Query 20045 TTCCACATGCTTGGTGTGGCTGGTGTATTCGGTGGGTCACTATTCAGTGCGATGCACGGT 20104 || |||||| | || || |||||||||||||| || || ||||||||||| ||||| ||| Sbjct 853 TTTCACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGT 794 Query 20105 TCGCTTGTTACGTCCTCGCTTG-TGCGTGAGACTACTGAACAGGAAAGTCAGAACTATGG 20163 || |||| || | || | ||| | | || || || ||| | ||| | || | || Sbjct 793 TC-CTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGG 735 Query 20164 TTACAAGTTTGGGCAAGAAGAAGAGACCTATAACATCGTAGCCGCTCATGGTTACTTTGG 20223 ||||| || || ||||| ||||| || ||||| |||||||||||||||||||| ||||| Sbjct 734 TTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCCGCTCATGGTTATTTTGG 675 Query 20224 ACGTTTGATCTTCCAATACGCTTCTTTCAACAATAGCCGTTCTCTACACTTCTTCCTTGC 20283 || |||||||||||||| ||| ||||||||| ||||| ||||||||||||| || Sbjct 674 CCGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCGTTACACTTCTTCCTAGC 615 Query 20284 TGCCTGGCCGGTGGTAGGGATTTGGTTCGCTGCCTTGGGCGTTTCTACAATGGCGTTTAA 20343 ||| ||||| || || || || |||||| |||| || || | || ||||| || || Sbjct 614 TGCTTGGCCTGTAGTGGGTATCTGGTTCACTGCTTTAGGTATCAGCACTATGGCTTTCAA 555 Query 20344 TCTGAACGGTTTCAACTTTAACCAGTCCCTTCTCGACAACAATGGTCGTGTCATTGATAC 20403 || ||||||||||| || ||||| || | | || | | || ||||| ||| |||| Sbjct 554 CCTAAACGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGCCGTGTAATTAATAC 495 Query 20404 TTGGGCTGACATTCTCAATCGTGCTAATCTCGGGTTTGAGGTGATGCATGAACGGAATGC 20463 ||||||||| || |||| |||||||| || || | || || ||||||||||| ||||| Sbjct 494 TTGGGCTGATATCATCAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGC 435 Query 20464 TCATAACTTCCCACTTGACCTTGC 20487 |||||||||||| || ||||| || Sbjct 434 TCATAACTTCCCTCTAGACCTAGC 411 >seq8 Length=21523998 Score = 329 bits (364), Expect = 1e-85 Identities = 444/611 (73%), Gaps = 12/611 (2%) Strand=Plus/Plus Query 19879 TTGGATTTGTGTTGCCTACTCTGCTCCGGTTGCAGCCGCCTCTGCGGTCTTTCTCG-TCT 19937 |||| || |||||| || || |||| |||||||| || | | | ||||| | ||| Sbjct 7119337 TTGGGTTCCTGTTGCATATTCAGCTCGTGTTGCAGCTGCTACCACTAT-TTTCTTGATCT 7119395 Query 19938 ACCCGTTTGGTCAGGGTAGCTTCTCCGATGCTATGCCTTTGGGTATCTCGGGTACGTTCA 19997 |||| | | ||| || || || || |||| ||||||| | || || || ||||| |||| Sbjct 7119396 ACCCAATCGATCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCA 7119455 Query 19998 ACTACATGTTGGTATTCCAAGCCGAACATAACATTCTCATGCACCCGTTCCACATGCTTG 20057 ||| |||| | |||||||| || || || |||| || |||||||| || |||||| | | Sbjct 7119456 ACTTCATGATTGTATTCCAGGCTGAGCACAACAACCTTATGCACCCATTTCACATGTTAG 7119515 Query 20058 GTGTGGCTGGTGTATTCGGTGGGTCACTATTCAGTGCGATGCACGGTTCGCTTGTTACGT 20117 |||| |||||||||||||| || || ||||||||||| ||||| ||||| |||| || | Sbjct 7119516 GTGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTC-CTTGGTAACT 7119574 Query 20118 CCTCGCTTG-TGCGTGAGACTACTGAACAGGAAAGTCAGAACTATGGTTACAAGTTTGGG 20176 || | ||| | | || || || ||| | ||| | || | ||| ||| ||| | Sbjct 7119575 TCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAAAGAAGGTCACAGGTTCAGT 7119634 Query 20177 CAAGAAGAAGAGACCTATAACATCGTAGCCGCTCATGGTTACTTTGGACGTTTGATCTTC 20236 |||||| || ||||| ||| |||| ||||||||||| ||||| || ||||||||| Sbjct 7119635 CAAGAA------ACTTATAATATCATAGCAGCTCATGGTTATTTTGGCCGATTGATCTTC 7119688 Query 20237 CAATACGCTTCTTTCAACAATAGCCGTTCTCTACACTTCTTCCTTGCTGCCTGGCCGGTG 20296 | ||| || ||||||| | || || ||||||||||||| ||||||||||| | Sbjct 7119689 C-ATATACTAGTTTCAAC-AGCTCCCATCATTACACTTCTTCCTAGCTGCCTGGCCTATA 7119746 Query 20297 GTAGGGATTTGGTTCGCTGCCTTGGGCGTTTCTACAATGGCGTTTAATCTGAACGGTTTC 20356 || | || || ||| || | || || | || ||||| || || || ||||||||| Sbjct 7119747 GTTCGTATCTGCTTCACTCCTTTAGGTATCAGCACTATGGCTTTCAACCTAAACGGTTTC 7119806 Query 20357 AACTTTAACCAGTCCCTTCTCGACAACAATGGTCGTGTCATTGATACTTGGGCTGACATT 20416 || || ||||| || | | || | | | || |||| ||| |||| |||| ||| || Sbjct 7119807 AATTTCAACCAATCTGTAGTTGATAGCCAAGGCTGTGTAATTAATACCTGGGTTGATATG 7119866 Query 20417 CTCAATCGTGCTAATCTCGGGTTTGAGGTGATGCATGAACGGAATGCTCATAACTTCCCA 20476 |||| |||||||| || || | || || |||| |||||| ||||||||||||||||| Sbjct 7119867 ATCAACCGTGCTAACCTTGGTATGGAAGTTATGCGTGAACGTAATGCTCATAACTTCCCT 7119926 Query 20477 CTTGACCTTGC 20487 || ||||| || Sbjct 7119927 CTAGACCTAGC 7119937 >seq6 Length=25289714 Score = 161 bits (178), Expect = 3e-35 Identities = 174/228 (76%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 19831 TTACATGGGACGAGAGTGGGAACTTAGCTATCGACTAGGAATGAGGCCTTGGATTTGTGT 19890 ||||||||| || |||||||||||||| | || || || ||| | | ||||||| ||| Sbjct 6246909 TTACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGACATTGGATTGCTGT 6246968 Query 19891 TGCCTACTCTGCTCCGGTTGCAGCCGCCTCTGCGGTCTTTCTCG-TCTACCCGTTTGGTC 19949 ||| || | |||| |||||||| || | || || ||||| | ||||||| | |||| Sbjct 6246969 TGCATATCCAACTCCTGTTGCAGCTGCTACCGCTGT-TTTCTTGATCTACCCAATCGGTC 6247027 Query 19950 AGGGTAGCTTCTCCGATGCTATGCCTTTGGGTATCTCGGGTACGTTCAACTACATGTTGG 20009 | || || || || |||| ||||||| | || || || ||||| ||||||| |||| | | Sbjct 6247028 AAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTG 6247087 Query 20010 TATTCCAAGCCGAACATAACATTCTCATGCACCCGTTCCACATGCTTG 20057 ||||||| || || || ||||| || |||||||| || |||||| ||| Sbjct 6247088 TATTCCAGGCTGAGCAGAACATCCTTATGCACCCATTTCACATGTTTG 6247135 >seq2 Length=18500646 Score = 136 bits (150), Expect = 1e-27 Identities = 157/208 (75%), Gaps = 5/208 (2%) Strand=Plus/Minus Query 20162 GGTTACAAGTTTGGGCAAGAAGAAGAGACCTATAACATCGTAGCCGCTCATGGTTACTTT 20221 |||||||| || || ||||| ||||| || ||||| |||||||| ||||||||||| ||| Sbjct 3034145 GGTTACAAATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGC-GCTCATGGTTATTTT 3034087 Query 20222 GGACGTTTGATCTTCCAATACGCTTCTTTCAACAATAGCCGTTCTCTACACTTCTTCCTT 20281 || || |||||||||||||| ||| ||||||||| | | ||||||||||||| Sbjct 3034086 GGCCGATTGATCTTCCAATATGCTAATTTCAACAACTCTCATCTGTTACACTTCTTCCTA 3034027 Query 20282 GCTGCCTGGCCGGTGGTAGGGATTTGGTTCGCTGCCTTGGGCGTTTCTAC--AATGGCGT 20339 | ||| ||||| || || || || |||| | |||| || | || || | ||||| | Sbjct 3034026 GTTGCTTGGCCTGTAGTGGGCATCTGGTCCACTGCTTTAG--GTATCAGCGATATGGCTT 3033969 Query 20340 TTAATCTGAACGGTTTCAACTTTAACCA 20367 | ||| | |||| |||||| || |||| Sbjct 3033968 TCAATTTAAACGATTTCAATTTCGACCA 3033941 >seq3 Length=24928530 Score = 118 bits (130), Expect = 3e-22 Identities = 147/199 (74%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 20037 TGCACCCGTTCCACATGCTTGGTGTGGCTGGTGTATTCGGTGGGTCACTATTCAGTGCGA 20096 |||||| || |||||| | || | |||||||||||||| || || |||||||||| | Sbjct 17256211 TGCACCTATTTCACATGTTAGGCATAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGTTA 17256270 Query 20097 TGCACGGTTCGCTTGTTACGTCCTCGCTTGTGC-GTGAGACTACTGAACAGGAAAGTCAG 20155 |||| ||||| |||| || | | | ||| | | || || || ||| | ||| | Sbjct 17256271 TGCATGGTTC-CTTGGTAACTTCAAGGTTGATCAGGGAAACCACAGAAAATGAATATGCT 17256329 Query 20156 AACTATGGTTACAAGTTTGGGCAAGAAGAAGAGACCTATAACATCGTAGCCGCTCATGGT 20215 || | |||||||| || || ||||| |||| || ||||| ||||||| ||||||||| Sbjct 17256330 AATGAAGGTTACAAATTCGGTCAAGAGAAAGAAACTTATAATATCGTAGTAGCTCATGGT 17256389 Query 20216 TACTTTGGACGTTTGATCT 20234 || ||||| || ||||||| Sbjct 17256390 TATTTTGGCCGATTGATCT 17256408 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 148800105435288