Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sesamum_20indicum_20[refseq_20GCF_5F000512975.1_202014-01-06] 16,236 sequences; 275,059,498 total letters Query= NC_025464.1 Length=44147 Score E Sequences producing significant alignments: (Bits) Value seq16236 609 7e-170 seq8 298 2e-76 seq6 174 4e-39 seq2 91.5 4e-14 seq3 82.4 2e-11 >seq16236 Length=153324 Score = 609 bits (674), Expect = 7e-170 Identities = 730/982 (74%), Gaps = 10/982 (1%) Strand=Plus/Minus Query 18724 TTTTGTGACTGGGTAACCAGTACAGATAACCGTCTTTATATCGGCTGGTTTGGAACACTG 18783 || ||| ||||| ||||||| || || ||||||||||| || || |||||||| || Sbjct 1393 TTCTGTAACTGGATAACCAGCACCGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 1334 Query 18784 ATGATTCCGTGTCTCCTTG-CAGCTACTATTTGT-TTCATTATTGCCTTCATTGCTGCAC 18841 ||||| || | || ||| | || ||| | ||| || |||||||||||||||||||| | Sbjct 1333 ATGATCCC-TACCTTATTGACCGCAACT-TCTGTATTTATTATTGCCTTCATTGCTGCCC 1276 Query 18842 CTCCTGTAGACATTGATGGCATCCGCGAGCCTGTTGCAGGCAGTCTTCTTTATGGAAACA 18901 |||| ||||| |||||||| || || || |||||| | || | | ||||| ||||||| Sbjct 1275 CTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTTTACTTTACGGAAACA 1216 Query 18902 ACATCATATCGGGAGCCGTCGTTCCGAG--CAGCAATGCCATCGGACTACACTTCTACCC 18959 | || || || || ||| | |||| | | ||| || ||||| | ||||| ||||| Sbjct 1215 ATATTATCTCAGGTGCCATTATTCCTACTTCTGCA--GCTATCGGTTTGCACTTTTACCC 1158 Query 18960 AATTTGGGAAGCTAATTCACTTGATGAATGGCTCTACAACGGGGGACCGTTCCAACTTGT 19019 |||||||||||| || ||||||||||| | |||||||| || || | |||| | Sbjct 1157 AATTTGGGAAGCAGCATCCGTTGATGAATGGTTATACAACGGTGGTCCTTATGAACTAAT 1098 Query 19020 GGTCTTCCACTTCCTCATTGGCGTCTATGCTTACATGGGACGCGAGTGGGAACTTAGCTA 19079 || | |||||| | |||| || | ||||||||| || |||||||||||||| | Sbjct 1097 TGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTT 1038 Query 19080 TCGACTAGGGATGCGCCCTTGGATTTGTGTTGCCTACTCAGCTCCTGTTGCCGCAGCCTC 19139 || || || ||||| ||||||||| |||||| || |||||||||||||| || || | Sbjct 1037 CCGTCTGGGTATGCGACCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTAC 978 Query 19140 TGCGGTCTTCCTTGTCTATCCATTTGGTCAAGGTTCCTTTAGCGACGCTATGCCTTTGGG 19199 || || ||| | |||| ||| | |||||||| ||| || | ||||||| | || Sbjct 977 CGCTGTTTTCTTGATCTACCCAATCGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGG 918 Query 19200 TATTAGTGGTACGTTCAACTACATGCTTGTATTCCAGGCTGAACATAACATCCTCATGCA 19259 ||| |||||| ||||||| |||| |||||||||||||||| || |||||||| ||||| Sbjct 917 AATTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCA 858 Query 19260 CCCGTTCCACATGCTCGGTGTCGCTGGTGTGTTCGGCGGGTCACTATTTAGTGCGATGCA 19319 ||| || |||||| | || || |||||||| |||||||| || ||||| ||||| ||||| Sbjct 857 CCCATTTCACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCA 798 Query 19320 CGGTTCGCTTGTTACGTCCTCGCTTG-TGCGTGAAACTACTGAAGAGGTATCTCAGAACT 19378 ||||| |||| || | || | ||| | | ||||| || ||| | | |||| || Sbjct 797 TGGTTC-CTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATG 739 Query 19379 ATGGCTACAAGTTTGGGCAAGAAGAAGAGACTTATAACATTGTTGCTGCTCATGGGTATT 19438 | || |||| || || ||||| ||||| |||||||| || || || |||||||| |||| Sbjct 738 AAGGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCCGCTCATGGTTATT 679 Query 19439 TTGGTCGGCTTATTTTCCAGTACGCATCCTTCAACAATAGCCGTTCTCTACATTTCTTTT 19498 |||| || | || ||||| || || |||||||| ||||| |||| ||||| Sbjct 678 TTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCGTTACACTTCTTCC 619 Query 19499 TGGCTGCTTGGCCTGTGGTTGGCATTTGGTTTGCCGCCCTTGGGGTAAGCACCATGGCAT 19558 | |||||||||||||| || || || ||||| | || | || | ||||| ||||| | Sbjct 618 TAGCTGCTTGGCCTGTAGTGGGTATCTGGTTCACTGCTTTAGGTATCAGCACTATGGCTT 559 Query 19559 TCAACTTGAATGGCTTTAACTTTAACCAGTCCCTTCTTGACAACAATGGTCGTGTCATTG 19618 ||||| | || || || || || ||||| || | |||| | | || ||||| ||| Sbjct 558 TCAACCTAAACGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGCCGTGTAATTA 499 Query 19619 ATACTTGGGCTGACATTCTCAATCGTGCTAACCTCGGCTTTGAGGTAATGCACGAACGTA 19678 ||||||||||||| || |||| ||||||||||| || | || || ||||| ||||||| Sbjct 498 ATACTTGGGCTGATATCATCAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTA 439 Query 19679 ATGCTCATAACTTCCCACTTGA 19700 |||||||||||||||| || || Sbjct 438 ATGCTCATAACTTCCCTCTAGA 417 >seq8 Length=21523998 Score = 298 bits (330), Expect = 2e-76 Identities = 434/606 (72%), Gaps = 14/606 (2%) Strand=Plus/Plus Query 19098 TTGGATTTGTGTTGCCTACTCAGCTCCTGTTGCCGCAGCCTCTGCGGTCTTCCTTGTCTA 19157 |||| || |||||| || ||||||| |||||| || || | | | ||| | |||| Sbjct 7119337 TTGGGTTCCTGTTGCATATTCAGCTCGTGTTGCAGCTGCTACCACTATTTTCTTGATCTA 7119396 Query 19158 TCCATTTGGTCAAGGTTCCTTTAGCGACGCTATGCCTTTGGGTATTAGTGGTACGTTCAA 19217 ||| | | |||||| ||| || | ||||||| | || ||| |||||| ||||| Sbjct 7119397 CCCAATCGATCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAA 7119456 Query 19218 CTACATGCTTGTATTCCAGGCTGAACATAACATCCTCATGCACCCGTTCCACATGCTCGG 19277 || |||| |||||||||||||||| || |||| ||| |||||||| || |||||| | || Sbjct 7119457 CTTCATGATTGTATTCCAGGCTGAGCACAACAACCTTATGCACCCATTTCACATGTTAGG 7119516 Query 19278 TGTCGCTGGTGTGTTCGGCGGGTCACTATTTAGTGCGATGCACGGTTCGCTTGTTACGTC 19337 ||| |||||||| |||||||| || ||||| ||||| ||||| ||||| |||| || | Sbjct 7119517 TGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTC-CTTGGTAACTT 7119575 Query 19338 CTCGCTTG-TGCGTGAAACTACTGAAGAGGTATCTCAGAACTATGGCTACAAGTTTGGGC 19396 || | ||| | | ||||| || ||| | | |||| || | || ||| ||| | | Sbjct 7119576 CTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAAAGAAGGTCACAGGTTCAGTC 7119635 Query 19397 AAGAAGAAGAGACTTATAACATTGTTGCTGCTCATGGGTATTTTGGTCGGCTTATTTTCC 19456 ||||| |||||||| || | || |||||||| |||||||| || | || |||| Sbjct 7119636 AAGAA------ACTTATAATATCATAGCAGCTCATGGTTATTTTGGCCGATTGATCTTCC 7119689 Query 19457 AGTACGCATCCTTCAACAATAGCCGTTCTCTACATTTCTTTTTGGCTGCTTGGCCTGTGG 19516 | || | |||||| | || || |||| ||||| | ||||| |||||| | | Sbjct 7119690 A-TATACTAGTTTCAAC-AGCTCCCATCATTACACTTCTTCCTAGCTGCCTGGCCTATAG 7119747 Query 19517 TTGGCATTTGGTTTGCCGCCCTTGGGGTA--AGCACCATGGCATTCAACTTGAATGGCTT 19574 || | || || || | |||| |||| ||||| ||||| |||||| | || || || Sbjct 7119748 TTCGTATCTGCTT--CACTCCTTTAGGTATCAGCACTATGGCTTTCAACCTAAACGGTTT 7119805 Query 19575 TAACTTTAACCAGTCCCTTCTTGACAACAATGGTCGTGTCATTGATACTTGGGCTGACAT 19634 || || ||||| || | |||| | | | || |||| ||| |||| |||| ||| || Sbjct 7119806 CAATTTCAACCAATCTGTAGTTGATAGCCAAGGCTGTGTAATTAATACCTGGGTTGATAT 7119865 Query 19635 TCTCAATCGTGCTAACCTCGGCTTTGAGGTAATGCACGAACGTAATGCTCATAACTTCCC 19694 |||| ||||||||||| || | || || |||| ||||||||||||||||||||||| Sbjct 7119866 GATCAACCGTGCTAACCTTGGTATGGAAGTTATGCGTGAACGTAATGCTCATAACTTCCC 7119925 Query 19695 ACTTGA 19700 || || Sbjct 7119926 TCTAGA 7119931 >seq6 Length=25289714 Score = 174 bits (192), Expect = 4e-39 Identities = 186/246 (76%), Gaps = 0/246 (0%) Strand=Plus/Plus Query 19027 CACTTCCTCATTGGCGTCTATGCTTACATGGGACGCGAGTGGGAACTTAGCTATCGACTA 19086 |||||| | | ||| || | ||||||||| || |||||||||||||| | || || Sbjct 6246886 CACTTCTTAAATGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTG 6246945 Query 19087 GGGATGCGCCCTTGGATTTGTGTTGCCTACTCAGCTCCTGTTGCCGCAGCCTCTGCGGTC 19146 || ||||| | ||||||| |||||| || || |||||||||| || || | || || Sbjct 6246946 GGTATGCGACATTGGATTGCTGTTGCATATCCAACTCCTGTTGCAGCTGCTACCGCTGTT 6247005 Query 19147 TTCCTTGTCTATCCATTTGGTCAAGGTTCCTTTAGCGACGCTATGCCTTTGGGTATTAGT 19206 ||| | |||| ||| | |||||||| ||| || | ||||||| | || ||| | Sbjct 6247006 TTCTTGATCTACCCAATCGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATTTCT 6247065 Query 19207 GGTACGTTCAACTACATGCTTGTATTCCAGGCTGAACATAACATCCTCATGCACCCGTTC 19266 ||||| ||||||| |||| |||||||||||||||| || |||||||| |||||||| || Sbjct 6247066 GGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCAGAACATCCTTATGCACCCATTT 6247125 Query 19267 CACATG 19272 |||||| Sbjct 6247126 CACATG 6247131 >seq2 Length=18500646 Score = 91.5 bits (100), Expect = 4e-14 Identities = 165/240 (69%), Gaps = 1/240 (0%) Strand=Plus/Minus Query 19381 GGCTACAAGTTTGGGCAAGAAGAAGAGACTTATAACATTGTTGCTGCTCATGGGTATTTT 19440 || ||||| || || ||||| ||||| |||||||| || || || |||||||| |||||| Sbjct 3034145 GGTTACAAATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGC-GCTCATGGTTATTTT 3034087 Query 19441 GGTCGGCTTATTTTCCAGTACGCATCCTTCAACAATAGCCGTTCTCTACATTTCTTTTTG 19500 || || | || ||||| || || |||||||| | | |||| ||||| | Sbjct 3034086 GGCCGATTGATCTTCCAATATGCTAATTTCAACAACTCTCATCTGTTACACTTCTTCCTA 3034027 Query 19501 GCTGCTTGGCCTGTGGTTGGCATTTGGTTTGCCGCCCTTGGGGTAAGCACCATGGCATTC 19560 | |||||||||||| || ||||| |||| | || | || | ||| ||||| ||| Sbjct 3034026 GTTGCTTGGCCTGTAGTGGGCATCTGGTCCACTGCTTTAGGTATCAGCGATATGGCTTTC 3033967 Query 19561 AACTTGAATGGCTTTAACTTTAACCAGTCCCTTCTTGACAACAATGGTCGTGTCATTGAT 19620 || || || | || || || |||| | | |||| || | || ||||| | |||| Sbjct 3033966 AATTTAAACGATTTCAATTTCGACCAACCTGTAGTTGATAATCAAGGCCGTGTAACTGAT 3033907 >seq3 Length=24928530 Score = 82.4 bits (90), Expect = 2e-11 Identities = 129/178 (72%), Gaps = 9/178 (5%) Strand=Plus/Plus Query 18817 TTCATTATTGCCTTCATTGCTGCACCTCCTGTAGACATTGATGGCATCCGCGAGCCTGTT 18876 || |||||| ||||| ||| ||| || | ||| |||||||| | || || |||||| Sbjct 18510368 TTTATTATTACCTTCGTTGGTGCTTCTACAAGAGATATTGATGGTTTTCGTGAACCTGTT 18510427 Query 18877 GCAGGCAGTCTT-CTTTATGGAAACAACATCATATCGGGAGCCGTCGTTCCGAG--CAGC 18933 | || |||| ||||||||||||||||| || || | | | | |||| | | || Sbjct 18510428 TCTGGA--TCTTACTTTATGGAAACAACATTATCTCAAGTGTCATTATTCCTACTTCTGC 18510485 Query 18934 AATGCCATCGGACTACACTTCTACCCAATTTGGGAAGC-TAATTCACTTGATGAATGG 18990 | || ||||| || ||| | | ||||||||||||||| | | || ||||||||||| Sbjct 18510486 A--GCTATCGGTCTCCACGTTTGCCCAATTTGGGAAGCATCACCCA-TTGATGAATGG 18510540 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 141121586158488