Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sesamum_20indicum_20[refseq_20GCF_5F000512975.1_202014-01-06] 16,236 sequences; 275,059,498 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq11 122 8e-23 seq1 91.5 1e-13 seq5 87.8 2e-12 >seq11 Length=15446199 Score = 122 bits (134), Expect = 8e-23 Identities = 155/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGA-AGCCAA 25233 ||||| | ||||||||||| | ||||| ||| | ||||| |||| || || ||| | Sbjct 13441854 ATGCAGATCTTTGTAAAAACTCTGACCGGCAAAACAATCACCCTCGAGGTGGAGAGCTCA 13441913 Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 || || || || | || || |||||| || || || || |||||||||||||| Sbjct 13441914 -GACACCATAGACAACGTCAAGGCTAAAATTCAGGACAAGGAAGGGATACCGCCCGATCA 13441972 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 |||||| | || | || ||| |||||||| || |||| ||||| | | ||| ||||| Sbjct 13441973 GCAAAGGTTGATCTTCGCCGGAAAACAACTGGAGGATGGTAGAACTCTAGCCGACTACAA 13442032 Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGTG 25384 ||||||||| ||||| || ||||||| ||| Sbjct 13442033 TATTCAAAAGGAATCGACTCTTCATTTGGTG 13442063 Score = 87.8 bits (96), Expect = 2e-12 Identities = 159/231 (69%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | |||||||| || | || || || |||| || | ||||| ||| Sbjct 11225517 ATGCAGATTTTTGTAAAGACTCTTACTGGTAAGACGATTACTCTGGAAGTTGAAAGTTCA 11225576 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 ||||| || || | || || |||||| || ||||| || || || || || ||| Sbjct 11225577 GATACAATTGACAATGTTAAGGCAAAAATCCAGGACAAAGAAGGAATCCCTCCTGACCAG 11225636 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAA--TGTCAGCGATTACA 25352 || ||| | || | | ||| |||||||| ||||||| || | || ||| |||||| Sbjct 11225637 CAGAGATTGATCTTTGCCGGTAAACAACTTGAAGATGGAAGGACGCTGGCAG--ATTACA 11225694 Query 25353 ATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGGAA 25403 |||| || |||||||| ||| ||||| | ||| | | ||||| || |||| Sbjct 11225695 ATATCCAGAAAGAATCAACCCTTCATCTTGTGCTGCGGTTGAGGGGTGGAA 11225745 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 25169 AACAACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAA 25228 || || |||||| | ||||| ||||| |||| || ||| | || || ||||||||||| Sbjct 13444920 AAGAAGATGCAAATCTTTGTGAAAACCCTAACTGGCAAAACAATTACTCTCGAAGTCGAA 13444979 Query 25229 GCCAACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCC 25288 || || || ||||| | || || || || || || || || || || || Sbjct 13444980 ACCTCAGACACCATCGACAATGTTAAGGCCAAGATCCAGGACAAGGAAGGAATTCCACCG 13445039 Query 25289 GATCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGAT 25348 |||||||| | || |||| || || ||||| | || |||| |||| | |||| Sbjct 13445040 GATCAGCAGCGTCTGATTTTCGCTGGGAAACAGTTGGAGGATGGCAGAACCCTAGCCGAT 13445099 Query 25349 TACAATATTCAAAAAGAATCCAC 25371 ||||||||||| || |||||||| Sbjct 13445100 TACAATATTCAGAAGGAATCCAC 13445122 >seq1 Length=18577331 Score = 91.5 bits (100), Expect = 1e-13 Identities = 108/145 (74%), Gaps = 1/145 (1%) Strand=Plus/Plus Query 25268 GATAAAGAGGGTATACCGCCCGATCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAA 25327 || ||||| |||||||| || || ||||| || ||||||| | || ||||| | ||| Sbjct 937478 GACAAAGAAGGTATACCTCCTGACCAGCAGAGGCTCATTTTTGCTGGTAAACAGTTGGAA 937537 Query 25328 GATGATAGAAATGTCAGCGATTACAATATTCAAAAAGAATCCACCATTCATTTAGTGTTA 25387 |||| |||| | ||||||||||||||||||||||| || |||| | || || Sbjct 937538 GATGGCAGAACCCTTGCAGATTACAATATTCAAAAAGAATCAACACTTCACCTTGTTTTG 937597 Query 25388 AGATTGAGAGGA-GGAAAATGATCA 25411 ||| | || ||| ||| |||||||| Sbjct 937598 AGACTCAGGGGAGGGACAATGATCA 937622 >seq5 Length=18898134 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | ||||| || || | || || ||| | || || | ||||| ||| | Sbjct 2599331 ATGCAAATATTTGTGAAGACTCTTACTGGTAAAACTATTACCCTGGAAGTTGAAAGCTCA 2599272 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || || || || | || ||| ||||||| || || ||||| || || || || ||| Sbjct 2599271 GACACAATTGACAATGTCAAAGCAAAAATTCAGGACAAGGAGGGGATTCCTCCAGACCAG 2599212 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAA--TGTCAGCGATTACA 25352 || ||| | || | | ||||||||||| || |||| || | || ||| |||||| Sbjct 2599211 CAGAGATTGATCTTTGCTGGCAAACAACTTGAGGATGGAAGGACCTTGGCAG--ATTACA 2599154 Query 25353 ATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 ||||||| || ||||| ||| | ||| | ||| | ||||||| || || Sbjct 2599153 ATATTCAGAAGGAATCGACCCTCCATCTTGTGCTGCGATTGAGGGGTGG 2599105 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445004068091520