Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sesamum_20indicum_20[refseq_20GCF_5F000512975.1_202014-01-06] 16,236 sequences; 275,059,498 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq13 268 1e-65 seq15 226 4e-53 seq53 100 4e-15 >seq13 Length=5050363 Score = 268 bits (296), Expect = 1e-65 Identities = 392/546 (72%), Gaps = 20/546 (4%) Strand=Plus/Plus Query 1455734 AACCCGAACCGCTT-TGTCCTGTTCCCCATCCGCTACCAGCGGATATGGGAAATGTACCA 1455792 ||||| ||||||| ||| |||||||||| | ||||| | | | ||||| |||||| | Sbjct 3175627 AACCCCGACCGCTTCTGTA-TGTTCCCCATTCACTACCCACAGGTCTGGGAGATGTACAA 3175685 Query 1455793 AAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGAC----CTCGGCGCCGACACG 1455848 ||||| | || || ||||| |||||||||||||| || || ||| | || | | Sbjct 3175686 AAAAG-CAGAAGCTTCCTTCTGGACCGCCGAGGAAGTTGATTTATCTCAGGACCTCCGC- 3175743 Query 1455849 GTCCACTGGGTGTCGCTGAGCGACGACGAGCGCCATTTCATCAAGCACGTCCTCGCCTTT 1455908 || |||| | || | | ||||||| |||||| |||| |||||||||||||| Sbjct 3175744 ---CATTGGGAAGCCCTCACCTCCGACGAGAAGCATTTCGTCAAACACGTCCTCGCCTTC 3175800 Query 1455909 TTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGT 1455968 ||| || ||| |||||| ||||| || || || || || ||||| ||||||||||| Sbjct 3175801 TTT-GCTGCCTCCGATGGTATCGTTTTGGAAAATCTCGCTGGACGCTTCATGAAAGAGGT 3175859 Query 1455969 CCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTC 1456028 ||| | | ||||| ||| || ||||| ||||| || ||||| || ||||| || || Sbjct 3175860 CCAGATCTCCGAGGCCCGTGCCTTCTACGGCTTCCAAATTGCCATTGAGAACATTCATTC 3175919 Query 1456029 TGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGTCGAGAAGGACCACCT 1456088 || | ||| || ||| | || | ||| |||| ||| ||| |||||| ||||||| Sbjct 3175920 CGAGATGTACAGTCTTCTGCTTGAGTCTTACATCAAAGACTCGGCCGAGAAAAACCACCT 3175979 Query 1456089 CTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTG 1456148 ||| ||||| || || || || || | ||| || |||||| | ||||| ||| || Sbjct 3175980 CTTCCGCGCAATTGAGACCGTTCCTTGCGTGGAAAAGAAGGCCAAGTGGGCCATGCGCTG 3176039 Query 1456149 GATCAACAAGGAGGGC-CTCGACACTTTGCCGAGCGGCTCGTCGGCTTTGC-CGCGTCGA 1456206 ||| || ||| || | |||||| |||||| | |||| |||||| | || || Sbjct 3176040 GAT------TGATGGCTCTGAATCCTTTGCTGAGCGGTTAGTCGCCTTTGCTTGTGTTGA 3176093 Query 1456207 GGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCAT 1456266 ||| || ||||||||||| || ||||||||||| |||||| | || |||||||| | || Sbjct 3176094 GGGGATATTTTTCTCGGGGAGCTTCTGCGCCATATTTTGGTTGAAAAAGCGCGGGATGAT 3176153 Query 1456267 GCCCGG 1456272 ||| || Sbjct 3176154 GCCGGG 3176159 >seq15 Length=10047770 Score = 226 bits (250), Expect = 4e-53 Identities = 394/567 (69%), Gaps = 11/567 (2%) Strand=Plus/Minus Query 1455734 AACCCGAACCGCTTTGTCCTGTTCCCCATCCGCTACCAGCGGATATGGGAAATGTACCAA 1455793 ||||| ||||||| | |||||||||||| |||| | || |||||||||||| | Sbjct 1769898 AACCCCGACCGCTTCTGCATGTTCCCCATCCAGTACCCACAAATCTGGGAAATGTACAAG 1769839 Query 1455794 AAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCTCGGCGCCGACACGGTCCA 1455853 |||| |||| || ||||| ||||| || ||||| || || | | ||| ||| Sbjct 1769838 AAAG-CCGAAGCGTCCTTCTGGACTGCGGAGGAAGTGGATTTGTCCCAAGACCTCCGCCA 1769780 Query 1455854 CTGGGTGTCGCTGAGCGACGACGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTTTCG 1455913 ||||| || | |||||| ||||||||||| ||||| |||||||| || || Sbjct 1769779 CTGGGAAAACCTCACTTCTGACGAGAAGCATTTCATCAAACACGTTCTCGCCTTCTT-CG 1769721 Query 1455914 CCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCCAAT 1455973 ||||| |||||||| || |||||||| || || ||||| ||||| || || || Sbjct 1769720 CCGCCTCTGATGGCATTGTTTTGGAGAACCTTGCTGGACGCTTCATGAAGGAAGTTCAGG 1769661 Query 1455974 TGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAAA 1456033 | | ||||| ||| || || ||||| ||||| ||||| || |||||||| || || | Sbjct 1769660 TCTCCGAGGCTCGTGCCTTCTATGGGTTTCAGATTGCCATTGAGAACATCCATTCCGAGA 1769601 Query 1456034 CCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGTCGAGAAGGACCACCTCTTTC 1456093 || || || | || |||| | ||||| ||| ||||||| || || |||| Sbjct 1769600 TGTATAGTCTTTTGCTTGAATCCTATATAAAGGATTCGGCCGAGAAGAACATGCTTTTTC 1769541 Query 1456094 GCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGATCA 1456153 |||| ||||| || || || | ||| ||| ||||| | ||||| | |||||| Sbjct 1769540 GCGCAATCGAGACTGTCCCATGTGTGGAGAAGAAGGCTAAATGGGCTTTACGCTGGATC- 1769482 Query 1456154 ACAAGGAGGGCCTCGACACTTT-GCCGAGCGGCTCGTCGGCTTTGCC-GCGTCGAGGGCA 1456211 || ||| || ||||| ||||| || | |||| ||||| | || || |||| Sbjct 1769481 -----GATGGCTCTGAAACTTTTGCCGAACGATTAATCGGATTTGCTTGTGTGGAAGGCA 1769427 Query 1456212 TCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCG 1456271 | ||||||||||| || ||||| || || |||||||| |||||||| || | ||||| | Sbjct 1769426 TATTTTTCTCGGGAAGCTTCTGTGCAATATTTTGGCTGAAGAAGCGTGGTTTGATGCCGG 1769367 Query 1456272 GTCTTCTGCTTTAGCAACGAATTTATC 1456298 || || || ||||||||| ||| Sbjct 1769366 GT-TTAACTTTCTCCAACGAATTAATC 1769341 >seq53 Length=249015 Score = 100 bits (110), Expect = 4e-15 Identities = 171/237 (72%), Gaps = 16/237 (7%) Strand=Plus/Plus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||| ||||||||| || ||||| ||||| || | | ||| ||| || | |||| || Sbjct 84083 ATCTTCAAGGTGCTGAAACAGGTCCACCCT-GA--CATCGGG--ATC-TCGAGCAAGGCC 84136 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCG-AGGCCGG 725029 ||| ||||||||| || |||||||||| |||| || ||| | | |||| | Sbjct 84137 ATGGGAATCATGAACAGCTTCATCAACGACATCTTCGAGAA-ATTGGCGCAGGAGGC--G 84193 Query 725030 TCGC--CTGGCGCGCTCCAACAAGCGCAAC--ACGATCGGCACGCGCGAGATCCAGACCG 725085 |||| || ||||||| ||||||| ||| || ||| | |||||||||||||||| Sbjct 84194 TCGCGTCTCGCGCGCTACAACAAGA--AACCGACCATCACTTCTCGCGAGATCCAGACCG 84251 Query 725086 CCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||||| | || | ||| || || ||||| | |||||||||||| || || |||| Sbjct 84252 CCGTGAGATTGGTGTTGCCGGGGGAGCTGGCGAAGCACGCCGTCTCTGAAGGAACCA 84308 Score = 93.3 bits (102), Expect = 6e-13 Identities = 166/233 (71%), Gaps = 12/233 (5%) Strand=Plus/Minus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||| ||||||||| |||||||| ||||| || | | ||| || || | |||| || Sbjct 100052 ATCTTCAAGGTGCTGAAGCAGGTCCACCCT-GA--CATCGGG--ATT-TCGAGCAAGGCC 99999 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCG-AGGCCGG 725029 ||| |||||||||| || ||||||| || |||| || ||| | | |||| | Sbjct 99998 ATGGGGATCATGAACAGCTTCATCAACGATATCTTCGAGAA-ATTGGCGCAGGAGGC--G 99942 Query 725030 TCGC--CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCC 725087 |||| || || || | ||||||| ||||| | |||||||||||||||||| Sbjct 99941 TCGCGGCTCGCACGTTACAACAAGAAGCCGACGATTACATCTCGCGAGATCCAGACCGCC 99882 Query 725088 GTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 ||| | ||| | ||| |||||| ||||||| |||||| || || || || || Sbjct 99881 GTGAGGCTGGTGTTGCCCGGCGAGCTGGCCAAGCACGCTGTTTCTGAAGGAAC 99829 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7176245207958232