Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sesamum_20indicum_20[refseq_20GCF_5F000512975.1_202014-01-06] 16,236 sequences; 275,059,498 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq9 105 9e-18 >seq9 Length=12411895 Score = 105 bits (116), Expect = 9e-18 Identities = 158/222 (71%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 69751 CCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCA 69810 || || ||||| | |||| || |||| ||| | |||| ||||| |||| ||| ||| Sbjct 8673617 CCCCCTTGATCCACATATCGAGCTGTGTCATTGAACACTCGAAGCATTGGAACAATGCCA 8673558 Query 69811 TTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGAT 69870 || || | |||||||||||| ||||||||||| | || || || ||| | ||| Sbjct 8673557 TTGGAAGTTCCATTTGTTCCACGTATATAACTTCCAGTAGCACGGATGTTATGCACAGAG 8673498 Query 69871 AGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATA 69930 | ||| || ||||| || ||| ||| | |||||| || | ||| |||||||| Sbjct 8673497 ACACCAATCCCTCCAGCTGATTTGCTGATAACAGCACACTCCTTGAGTGTATCATATATG 8673438 Query 69931 CCCTCTATGCTATCATCTATCATG-TTAAGAAGAAAACAGCT 69971 ||||| || ||||| ||| ||||| || ||| |||||||| Sbjct 8673437 CCCTCAATACTATCCTCTTTCATGCATATCAAG-AAACAGCT 8673397 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 69991 GTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTG 70050 ||||| ||||| || | ||||||||||| |||||||||||| | ||| | ||||| Sbjct 8673292 GTTCCAGCATTGAAAAGGGTAGGAGATGCATGAGTGAACCATCGCTGAGACAACAGATGA 8673233 Query 70051 TATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAAC 70110 ||||||| ||| |||| || ||||| || || || || | || || | ||||||| Sbjct 8673232 TATGTTTTTATAACTGAATCAATATCATCCTTGTGGATACCAACGGCAACCCTCATCAAC 8673173 Query 70111 ATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGA 70170 || || ||||| | || || || | | || |||||||| || |||| || Sbjct 8673172 ATGTGTTGAGGCCTCTCAACAACCTTGCCTTGGACCTTTAACAGGTAAGACCTTTCAAGG 8673113 Query 70171 GTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 70217 ||||| || ||||| || | || ||||||||| || || || || Sbjct 8673112 GTTTTGAATCCAAAGTAATCATAGTCAAAGTCTCTGTCATATATGAT 8673066 Score = 95.1 bits (104), Expect = 2e-14 Identities = 117/158 (74%), Gaps = 4/158 (3%) Strand=Plus/Minus Query 69489 CTCTTTTTCATATT--GTGTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAAT 69546 |||| | ||||| | ||||||| ||| ||| ||||| || |||||| |||| | || Sbjct 8674110 CTCTCTCTCATACTTAGTGTATAAAGC--TTCAAATTCTTCACCCCAACAATCAGCTAAC 8674053 Query 69547 CCAGGACATTCATTTGGACACATCAATGACCACACATCATCATCCTTAACTCGTTTCATA 69606 |||||| ||||| ||||| | ||||||||| ||| | | ||||| || |||| Sbjct 8674052 CCAGGAGCCTCATTCGGACAAAACAATGACCATTGTCCATTAGATTGAACTCTTTGCATA 8673993 Query 69607 AATAGATCGGGAATCCAAAGAGCTATAAAGAGATCTCT 69644 |||||||| || | ||||||||| ||| |||||||| Sbjct 8673992 AATAGATCAGGTACCCAAAGAGCATAAAATAGATCTCT 8673955 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686769391859040