Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sesamum_20indicum_20[refseq_20GCF_5F000512975.1_202014-01-06] 16,236 sequences; 275,059,498 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq13 165 6e-36 seq15 127 2e-24 >seq13 Length=5050363 Score = 165 bits (182), Expect = 6e-36 Identities = 390/581 (67%), Gaps = 6/581 (1%) Strand=Plus/Plus Query 43707 TGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCGTCATTTT 43766 |||| || ||||| || | | | ||| | ||||||||||||||| | || || || | Sbjct 3175646 TGTTCCCCATTCACTACCCACAGGTCTGGGAGATGTACAAAAAAGCAGAAGCTTCCTTCT 3175705 Query 43767 GGACAGCAGAAGAAGTTGATTTGACTAAAGACTTAGCACATTGGATTGCATTAAAACCAC 43826 |||| || || ||||||||||| || | ||| | |||||| || | | | Sbjct 3175706 GGACCGCCGAGGAAGTTGATTTATCTCAGGACCTCCGCCATTGGGAAGCCCTCACCTCCG 3175765 Query 43827 AAGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCA 43886 | || || ||||| | || | || || |||||||| ||| || || || Sbjct 3175766 ACGAGAAGCATTTCGTCAAACACGTCCTCGCCTTCTTTGCTGCCTCCGATGGTATCGTTT 3175825 Query 43887 ATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTT 43946 |||||| | | | | || || | |||| || || | | || || || || | Sbjct 3175826 TGGAAAATCTCGCTGGACGCTTCATGAAAGAGGTCCAGATCTCCGAGGCCCGTGCCTTCT 3175885 Query 43947 ATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATA 44006 | || || ||||||||||| || || |||||||| || ||||||||||||||| | || Sbjct 3175886 ACGGCTTCCAAATTGCCATTGAGAACATTCATTCCGAGATGTACAGTCTTCTGCTTGAGT 3175945 Query 44007 CGTACATCAAAGA-TGGGCACGAGAAGCATCGATTGTTTAATGCGATAGAAACAGTACCT 44065 | ||||||||||| | ||| |||||| | | | || || || || || || ||| Sbjct 3175946 CTTACATCAAAGACTCGGC-CGAGAAAAACCACCTCTTCCGCGCAATTGAGACCGTTCCT 3176004 Query 44066 -GCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAATTCAAATGATTCTTTTGG 44124 ||| ||| | || || | |||||| | ||||| || ||| || |||| Sbjct 3176005 TGCGTGGAAA-AGAAGGCCAAGTGGGCCATGCGCTGGATTGATGGCTCTGAATCCTTTGC 3176063 Query 44125 AGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGG-ATCGTTTGCGG 44183 || || | ||||| ||||| ||| || || || || || || || | | | |||| Sbjct 3176064 TGAGCGGTTAGTCGCCTTTGCTTGTGTTGAGGGGATATTTTTCTCGGGGAGCTTCTGCG- 3176122 Query 44184 CCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAA 44243 ||||||||||||| || || || || ||||||| || ||||| || || ||||| |||| Sbjct 3176123 CCATATTTTGGTTGAAAAAGCGCGGGATGATGCCGGGCTTGACTTTCTCCAATGAATTAA 3176182 Query 44244 TAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTG 44284 | || |||||||| || ||||| |||||||| ||| || Sbjct 3176183 TTTCGCGAGATGAAGGTTTGCATTGTGATTTTGCGTGCCTG 3176223 >seq15 Length=10047770 Score = 127 bits (140), Expect = 2e-24 Identities = 239/345 (69%), Gaps = 6/345 (2%) Strand=Plus/Minus Query 43943 TTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATA 44002 || ||||||||||| |||||||| || || || ||||| || ||||| |||||| || | Sbjct 1769643 TTCTATGGGTTTCAGATTGCCATTGAGAACATCCATTCCGAGATGTATAGTCTTTTGCTT 1769584 Query 44003 GATACGTACATCAAAGATGGGCACGAGAAG--CATCGATTGTTTAATGCGATAGAAACAG 44060 || | || || || ||| | ||||||| ||| | || ||| || || || || | Sbjct 1769583 GAATCCTATATAAAGGATTCGGCCGAGAAGAACAT-GCTT-TTTCGCGCAATCGAGACTG 1769526 Query 44061 TACC-TGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAATTCAAATGATTCT 44119 | || || | | | | || || | ||||| | ||||| || ||| || Sbjct 1769525 TCCCATGTGTGGAGA-AGAAGGCTAAATGGGCTTTACGCTGGATCGATGGCTCTGAAACT 1769467 Query 44120 TTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTT 44179 |||| |||||| | ||| ||||| |||||||||||| || || || ||| || Sbjct 1769466 TTTGCCGAACGATTAATCGGATTTGCTTGTGTGGAAGGCATATTTTTCTCGGGAAGCTTC 1769407 Query 44180 GCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAG 44239 || ||||||||| | ||||| || ||||||||||| || || || || || || || Sbjct 1769406 TGTGCAATATTTTGGCTGAAGAAGCGTGGTTTGATGCCGGGTTTAACTTTCTCCAACGAA 1769347 Query 44240 TTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTG 44284 ||||| || ||||| || || || ||||||||||| |||||| Sbjct 1769346 TTAATCTCACGGGATGAGGGTTTGCACTGCGATTTTGCGTGCTTG 1769302 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397377352897180