Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sesamum_20indicum_20[refseq_20GCF_5F000512975.1_202014-01-06] 16,236 sequences; 275,059,498 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq15 156 5e-33 seq14 116 5e-21 seq3 116 5e-21 seq2 105 8e-18 seq6 98.7 1e-15 seq9 96.9 4e-15 >seq15 Length=10047770 Score = 156 bits (172), Expect = 5e-33 Identities = 406/614 (66%), Gaps = 9/614 (1%) Strand=Plus/Plus Query 122659 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCT 122718 ||||| || ||| | ||||||||| || || || | ||| || ||||| || ||| Sbjct 1769309 GCAAAATCGCAGTGCAAACCCTCATCCCGTGAGATTAATTCGTTGGAGAAAGTTAAACCC 1769368 Query 122719 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATA 122778 ||||| | ||| |||||||||| |||| | || || ||||| || ||||| || || Sbjct 1769369 GGCATCAAACCACGCTTCTTCAGCCAAAATATTGCACAGAAGCTTCCCGAGAAAAATATG 1769428 Query 122779 CCCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTGCATCAAAC 122838 || |||||||| ||||| | | | |||||||| || | ||| |||| | | Sbjct 1769429 CCTTCCACACAAGCAAATCCGATTAATCGTTCGGCAAAAGTTTCAGAGC---CATCGATC 1769485 Query 122839 CATTTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTCAAAT 122898 || | |||||||| ||||||||||| | |||||| ||||| | ||| || ||| Sbjct 1769486 CAGCGTAAAGCCCATTTAGCCTTCTTCTCCACACATGGGACAGTCTCGATTGCGCGAAAA 1769545 Query 122899 AACTGCTTCTTTTCAGATCCATCCTTAATGTATTTGTCAATCAATTTTGAATATGTTTCG 122958 | | ||||| || | |||||| || || |||| ||| ||| | ||| Sbjct 1769546 AGCATGTTCTTCTCGGCCGAATCCTTTATATAGGATTCAAGCAAAAGACTATACATCTCG 1769605 Query 122959 CCATGAACCATTTCATTATGGCA--TTGATATGCGTAGAATGAGCGCGCTTCGCTTATCT 123016 ||| | | ||| |||||| ||| | | ||||| | || || ||| | || Sbjct 1769606 GAATGGATGTTCTCA--ATGGCAATCTGAAACCCATAGAAGGCACGAGCCTCGGAGACCT 1769663 Query 123017 GAACCTCATCCGCAAAATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCAA 123076 |||| || | | || | | ||||| |||||||| ||||| || | || | Sbjct 1769664 GAACTTCCTTCATGAAGCGTCCAGCAAGGTTCTCCAAAACAATGCCATCAGAGGCGGCGA 1769723 Query 123077 AGAATGCCAGGATGTACTTTATGAATTTCTTTTCATTTTCATTCAGGGTCTTCCAGTCGT 123136 |||| || || | || || ||||| | ||| || | | | ||| | | ||||| | Sbjct 1769724 AGAAGGCGAGAACGTGTTTGATGAAATGCTTCTCGTCAGAAGTGAGGTTTTCCCAGTGGC 1769783 Query 123137 CAAGATCTTTGGACAAATCAACTTCTTCCGCAGTCCAATTGCTCATTTGAGCCTTTTTAT 123196 || |||| ||||||||| ||||| ||||||||||| | | || || || || | Sbjct 1769784 GGAGGTCTTGGGACAAATCCACTTCCTCCGCAGTCCAGAAGGACGCTTCGGCTTTCTTGT 1769843 Query 123197 AGAGTTCCCAGAGTTGTGGATACTTCAGGGGGAAGACTGTA-AATCTGTTTAGGGTGGGG 123255 | | |||||||| |||||| |||| | |||||| | || | || | || || ||||| Sbjct 1769844 ACATTTCCCAGATTTGTGGGTACTGGATGGGGAACA-TGCAGAAGCGGTCGGGGTTGGGG 1769902 Query 123256 GCCAGAATAGGTTC 123269 || || | |||||| Sbjct 1769903 GCGAGGAGAGGTTC 1769916 >seq14 Length=4882680 Score = 116 bits (128), Expect = 5e-21 Identities = 225/332 (68%), Gaps = 0/332 (0%) Strand=Plus/Minus Query 11483 TCAAGGATATCCACGCGATTAGTGGCCGCAATAACCACAATGCCAGTCTCATTGTCAAAG 11542 || || ||||| | || ||||| || |||||||| | || ||||| | ||||| Sbjct 2614418 TCGAGAATATCAGCACGGTTAGTAGCTGCAATAACAATTATACCAGTATTCCCTTCAAAA 2614359 Query 11543 CCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGCATA 11602 |||||||| || || | | || || | ||||| || || |||||||| || | Sbjct 2614358 CCATCCATTTCTGTCAAGAGCTGGTTTAGCGTTTGCTCCCTTTCATCATTGCCTCCACCA 2614299 Query 11603 CCACCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACATGGT 11662 ||||| | | ||| ||| || |||||||| ||||||| || ||||| || || Sbjct 2614298 ATACCAGTTCCTCTTTGACGGCCAACAGCATCAATTTCATCAACAAACACAATGCAGGGA 2614239 Query 11663 TGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACAAAC 11722 |||||| ||| | | || ||||| || || ||| |||||| || ||||||||| Sbjct 2614238 GCATTTTCCTTGGCCTTCTTGAAAAGATCACGGACTCTTGAGGCACCGACTCCAACAAAC 2614179 Query 11723 ATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTCACCCGCGATG 11782 ||||| ||||| | | | || | || ||||| ||| || |||||| ||||| Sbjct 2614178 ATCTCAACAAACTCAGAACCTGAAATCGAGAAAAATGGAACACCTGCTTCACCAGCGATT 2614119 Query 11783 GCTCGGGCGAGGAGGGTCTTTCCCGTACCTGG 11814 || || || | |||||||| |||||||| Sbjct 2614118 GCCTTTGCTAGCAATGTCTTTCCAGTACCTGG 2614087 >seq3 Length=24928530 Score = 116 bits (128), Expect = 5e-21 Identities = 217/316 (69%), Gaps = 2/316 (1%) Strand=Plus/Minus Query 11539 AAAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGG 11598 ||| |||||||| || || | | |||||||| || || |||||||||||||| | Sbjct 23876494 AAATCCATCCATTTCCGTCAACAGCTGATTAATGGTCTGCTCTCTCTCATCATTCCCACC 23876435 Query 11599 CATACCACCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACA 11658 | ||| || | | ||| | ||||| |||||||||||||||||||| |||||||| Sbjct 23876434 ACCAAGACCTGCTCCTCTCTGCCTTCCCACGGCATCAATCTCATCAATGAACACAATACA 23876375 Query 11659 TGGTTGATTTTCGC-GGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAA 11717 || || ||| | ||| | ||||| | ||| | || ||| || || ||||| | Sbjct 23876374 AGG-TGCTTTCGACTTGGCCTTCTCAAACAAATCCCTCACTCTTGAAGCTCCTACACCCA 23876316 Query 11718 CAAACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTCACCCG 11777 |||||| ||||||||| | || || | || || || || || | ||||| | Sbjct 23876315 CAAACAGCTCCACAAACTCTGATGCTGCACATGAGAAAAAGGGCACCCCAGCCTCACCAG 23876256 Query 11778 CGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCCTC 11837 | | ||||| || ||||||||||| || ||||| ||| ||| | | ||| ||| Sbjct 23876255 CCACGGCTCTTGCCAGGAGGGTCTTCCCAGTACCCGGCGGACCAACCAAAAGACAACCTT 23876196 Query 11838 GGGGGATCTTGGCACC 11853 ||||| || ||||| Sbjct 23876195 TCGGGATTTTTGCACC 23876180 >seq2 Length=18500646 Score = 105 bits (116), Expect = 8e-18 Identities = 196/282 (70%), Gaps = 12/282 (4%) Strand=Plus/Minus Query 11539 AAAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGG 11598 ||| |||||||| || || | | |||||||| || || ||||| ||||||||| | Sbjct 3972028 AAATCCATCCATTTCAGTCAAGAGCTGATTAATAGTCTGCTCTCTTTCATCATTTCC--- 3971972 Query 11599 CATACCA---CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAAT 11655 | |||| || || | | |||| | ||||| |||||||| ||||||||||| ||||| Sbjct 3971971 CCCACCAAGTCCTGCCCCTCTTTGCCTACCCACAGCATCAATTTCATCAATGAACACAAT 3971912 Query 11656 ACATGGTTGATTTTCGC-GGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACAC 11714 || || | ||| | ||| | ||||| | ||| | || ||| || || |||| Sbjct 3971911 GCAAGG-AGCTTTAGACTTGGCCTTATCAAACAAATCCCTCACTCTTGAAGCTCCAACAC 3971853 Query 11715 CAACAAACATCTCCACAAAGTTTGCGGCAGAGCACTGG--ATGAATGGGACATTTGATTC 11772 | ||||||| ||| ||||| | || || ||||| || | ||| || || || ||| Sbjct 3971852 CTACAAACAACTCTACAAACTCTGATGC--AGCACAGGAAAAGAACGGTACCCCTGCTTC 3971795 Query 11773 ACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGG 11814 ||| || | || | || | ||||||||||| ||||| || Sbjct 3971794 ACCAGCCACTGCCCTTGCCAAAAGGGTCTTTCCAGTACCGGG 3971753 >seq6 Length=25289714 Score = 98.7 bits (108), Expect = 1e-15 Identities = 230/347 (66%), Gaps = 0/347 (0%) Strand=Plus/Minus Query 11483 TCAAGGATATCCACGCGATTAGTGGCCGCAATAACCACAATGCCAGTCTCATTGTCAAAG 11542 ||||| ||||| | || ||||| || ||||| || | || || || | ||||| Sbjct 23328587 TCAAGAATATCTGCACGGTTAGTTGCTGCAATTACAATTATACCGGTATTTCCTTCAAAA 23328528 Query 11543 CCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGCATA 11602 |||||||| || || | | || || | || || || || ||||||||| || | Sbjct 23328527 CCATCCATTTCTGTCAAGAGCTGGTTCAGGGTCTGCTCCCTTTCATCATTTCCTCCACCA 23328468 Query 11603 CCACCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACATGGT 11662 ||||| | | ||| || || |||||||| ||||||| |||||||| || || Sbjct 23328467 ATACCAGTTCCTCTTTGACGCCCAACAGCATCAATTTCATCAACAAAGACAATGCAGGGA 23328408 Query 11663 TGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACAAAC 11722 |||||| || | | || ||||| || |||| | || || || ||||||||| Sbjct 23328407 GCATTTTCCTTCGCCTTCTTGAAAAGATCACGGACCCGTGAAGCCCCAACTCCAACAAAC 23328348 Query 11723 ATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTCACCCGCGATG 11782 ||||| ||||| | | | || | || || || ||| | |||||| || || Sbjct 23328347 ATCTCAACAAACTCAGAACCTGAAATCGAGAAAAAAGGAACACCGGCTTCACCAGCAATA 23328288 Query 11783 GCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAAG 11829 || ||| || | ||||||||| ||||||||| ||| | ||||| Sbjct 23328287 GCCTTGGCTAGCAAGGTCTTTCCAGTACCTGGCGGACCAACAAGAAG 23328241 >seq9 Length=12411895 Score = 96.9 bits (106), Expect = 4e-15 Identities = 158/225 (70%), Gaps = 2/225 (1%) Strand=Plus/Minus Query 111941 TGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGG 112000 || ||||||||||| ||||||||||| ||||| || | ||| ||| ||||| | || Sbjct 8673304 TGTGGTCTTGGTGTTCCAGCATTGAAAAGGGTAGGAGATGCATGAGTGAACCATCGCTGA 8673245 Query 112001 GACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCG 112060 |||| | | ||||| | | || |||||||| || ||| |||||| || | || Sbjct 8673244 GACAACAGATGATATGTTTTTATAACTGAATCAATATCATCCTTGTGGATACCAACGGCA 8673185 Query 112061 ACCCGCATGAACATGTACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGTTGA-AGATA 112119 |||| ||| ||||||| || || | || | | |||| | || || || | || || Sbjct 8673184 ACCCTCATCAACATGTGTTGAGGCCTCTCAACAACCTTGCCTTGGA-CCTTTAACAGGTA 8673126 Query 112120 GCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTC 112164 | | ||||||||||||| ||||||||| || | ||| |||| Sbjct 8673125 AGACCTTTCAAGGGTTTTGAATCCAAAGTAATCATAGTCAAAGTC 8673081 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627904540905600