Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sesamum_20indicum_20[refseq_20GCF_5F000512975.1_202014-01-06] 16,236 sequences; 275,059,498 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq3 127 3e-24 seq13 93.3 5e-14 seq2 91.5 2e-13 seq9 82.4 9e-11 >seq3 Length=24928530 Score = 127 bits (140), Expect = 3e-24 Identities = 196/277 (71%), Gaps = 2/277 (1%) Strand=Plus/Minus Query 14152 AAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCAGG 14211 ||| |||||||| || ||||| || ||||| ||||| || || | ||||||||| || Sbjct 23876494 AAATCCATCCATTTCCGTCAACAGCTGATTAATGGTCTGCTCTCTCTCATCATTCCCACC 23876435 Query 14212 CATACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACA 14271 | ||| || | | ||| | || ||||| ||||| ||||| ||||| || ||||| Sbjct 23876434 ACCAAGACCTGCTCCTCTCTGCCTTCCCACGGCATCAATCTCATCAATGAACACAATACA 23876375 Query 14272 TGGTTGATTTTCACG-GGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCA 14330 ||| | ||| || ||| ||||| | ||| | |||||| || || ||||||| Sbjct 23876374 AGGT-GCTTTCGACTTGGCCTTCTCAAACAAATCCCTCACTCTTGAAGCTCCTACACCCA 23876316 Query 14331 CAAACATCTCCACAAAATTGGCGGCGGAACATTGGATGAAGGGGACGTTAGATTCACCCG 14390 |||||| ||||||||| | | || | |||| || ||||| || || ||||| | Sbjct 23876315 CAAACAGCTCCACAAACTCTGATGCTGCACATGAGAAAAAGGGCACCCCAGCCTCACCAG 23876256 Query 14391 CGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGG 14427 | | ||||| || |||||||||||||| || || || Sbjct 23876255 CCACGGCTCTTGCCAGGAGGGTCTTCCCAGTACCCGG 23876219 >seq13 Length=5050363 Score = 93.3 bits (102), Expect = 5e-14 Identities = 174/255 (68%), Gaps = 3/255 (1%) Strand=Plus/Minus Query 130033 ACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTT 130092 ||| || || || || || | |||||| ||||| || || ||||| | || ||||| Sbjct 3176199 ACCTTCATCTCGCGAAATTAATTCATTGGAGAAAGTCAAGCCCGGCATCATCCCGCGCTT 3176140 Query 130093 CTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAA 130152 |||||||| || || || || || || ||||| || |||||||| ||||| || || Sbjct 3176139 TTTCAACCAAAATATGGCGCAGAAGCTCCCCGAGAAAAATATCCCCTCAACACAAGCAAA 3176080 Query 130153 CGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATCAAACCACTTCATCGCCCACTG 130212 || | | |||||||||||||| || ||||| ||| ||| ||||||| Sbjct 3176079 GGCGACTAACCGCTCAGCAAAGGATTCAGA---GCCATCAATCCAGCGCATGGCCCACTT 3176023 Query 130213 CGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTTCCTTCTTTTCTGA 130272 ||||| || || | || || ||||||| || || ||||| | || || || | Sbjct 3176022 GGCCTTCTTTTCCACGCAAGGAACGGTCTCAATTGCGCGGAAGAGGTGGTTTTTCTCGGC 3175963 Query 130273 TGGATCTTTGATGTA 130287 | ||||||||||| Sbjct 3175962 CGAGTCTTTGATGTA 3175948 >seq2 Length=18500646 Score = 91.5 bits (100), Expect = 2e-13 Identities = 142/199 (71%), Gaps = 8/199 (4%) Strand=Plus/Minus Query 14152 AAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCAGG 14211 ||| |||||||| ||||||||||| ||||| || || || || | ||||||||| | Sbjct 3972028 AAATCCATCCATTTCAGTCAAGAGCTGATTAATAGTCTGCTCTCTTTCATCATTTCC--- 3971972 Query 14212 CATACCA---CCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGAT 14268 | |||| || || | | |||| |||| || || ||||||||||| ||||| || || Sbjct 3971971 CCCACCAAGTCCTGCCCCTCTTTGCCTACCCACAGCATCAATTTCATCAATGAACACAAT 3971912 Query 14269 ACATGGTTGATTTTCAC-GGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACAC 14327 || || | ||| || ||| ||||| | ||| | |||||| || || |||| Sbjct 3971911 GCAAGG-AGCTTTAGACTTGGCCTTATCAAACAAATCCCTCACTCTTGAAGCTCCAACAC 3971853 Query 14328 CCACAAACATCTCCACAAA 14346 | ||||||| ||| ||||| Sbjct 3971852 CTACAAACAACTCTACAAA 3971834 >seq9 Length=12411895 Score = 82.4 bits (90), Expect = 9e-11 Identities = 72/87 (83%), Gaps = 2/87 (2%) Strand=Plus/Minus Query 118182 TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCT-GTGGA 118240 || ||||| | |||||||| ||||||||||||||||| ||||||| | |||| || || Sbjct 8676037 TAAATATTAGAGGTGTATGGTTCAAAGCACTCATTGTT-CCCAAGAATCTGGCTTGTTGA 8675979 Query 118241 GGCTGTGGGCATGGGTGCCATGAGAAG 118267 || |||||||||||||| || ||||| Sbjct 8675978 AGCAGTGGGCATGGGTGCTATTAGAAG 8675952 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618309688576160