Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sesamum_20indicum_20[refseq_20GCF_5F000512975.1_202014-01-06] 16,236 sequences; 275,059,498 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq3 122 1e-22 seq6 120 4e-22 seq15 114 2e-20 seq14 111 2e-19 seq13 96.9 4e-15 seq2 96.9 4e-15 >seq3 Length=24928530 Score = 122 bits (134), Expect = 1e-22 Identities = 198/281 (70%), Gaps = 8/281 (3%) Strand=Plus/Minus Query 9613 AAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 9672 ||| |||||||| || ||||| || || ||||| || || || | ||||||||| | Sbjct 23876494 AAATCCATCCATTTCCGTCAACAGCTGATTAATGGTCTGCTCTCTCTCATCATTCCCACC 23876435 Query 9673 CATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCA 9732 | ||| || | | ||| |||||||||||||||||||||||||||| || || || Sbjct 23876434 ACCAAGACCTGCTCCTCTCTGCCTTCCCACGGCATCAATCTCATCAATGAACACAATACA 23876375 Query 9733 TGGTTGATTTTCGCGAGCGACT--TCAAAGAGATCCCGTACACGCTTG--GCGCCCACAC 9788 ||| ||||| | || ||||| | ||||| ||| |||| || || |||| Sbjct 23876374 AGGT--GCTTTCGACTTGGCCTTCTCAAACAAATCCC--TCACTCTTGAAGCTCCTACAC 23876319 Query 9789 CAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCAC 9848 | ||||||| ||||||||| | || || | |||| || ||||| || || |||| Sbjct 23876318 CCACAAACAGCTCCACAAACTCTGATGCTGCACATGAGAAAAAGGGCACCCCAGCCTCAC 23876259 Query 9849 CCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGC 9889 | || | ||||| || || || ||||| || ||||| ||| Sbjct 23876258 CAGCCACGGCTCTTGCCAGGAGGGTCTTCCCAGTACCCGGC 23876218 >seq6 Length=25289714 Score = 120 bits (132), Expect = 4e-22 Identities = 233/337 (69%), Gaps = 8/337 (2%) Strand=Plus/Minus Query 9557 TCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGT--TTCATTATCAA 9614 ||||| ||||| | || || || || || || |||| ||||| || ||| || ||| Sbjct 23328587 TCAAGAATATCTGCACGGTTAGTTGCTGCAATTACAATTATACCGGTATTTCCTT--CAA 23328530 Query 9615 AACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCA 9674 |||||||||| |||||||| || ||||| | || || |||| ||||||||| || Sbjct 23328529 AACCATCCATTTCTGTCAAGAGCTGGTTCAGGGTCTGCTCCCTTTCATCATTTCCTCCAC 23328470 Query 9675 TACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCATG 9734 | ||||| | | ||| || || |||||||| ||||||| ||||| ||||| | Sbjct 23328469 CAATACCAGTTCCTCTTTGACGCCCAACAGCATCAATTTCATCAACAAAGACAATGCAGG 23328410 Query 9735 GTTGATTTTCGCGAG-CGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACA 9793 | |||||| | | ||| ||| ||||| || || || || || || |||||| Sbjct 23328409 GAGCATTTTCCTTCGCCTTCTTGAAA-AGATCACGGACCCGTGAAGCCCCAACTCCAACA 23328351 Query 9794 AACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGC 9852 |||||||| ||||| | | | ||| || | || || || ||| | |||||| || Sbjct 23328350 AACATCTCAACAAACTCAGAACCTGAA-ATCGAGAAAAAAGGAACACCGGCTTCACCAGC 23328292 Query 9853 AATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGC 9889 ||| || ||| || | ||||| || ||||||||| Sbjct 23328291 AATAGCCTTGGCTAGCAAGGTCTTTCCAGTACCTGGC 23328255 >seq15 Length=10047770 Score = 114 bits (126), Expect = 2e-20 Identities = 400/618 (65%), Gaps = 15/618 (2%) Strand=Plus/Minus Query 94345 GAACCTCTCCTAGCCCCCACACTAAACAGATTTACTG--TGTTCCCCCTGAAGTATCCAC 94402 ||||||||||| ||||||| | || | || ||| |||||||| | |||| |||| Sbjct 1769916 GAACCTCTCCTCGCCCCCAACCCCGACCGCTT--CTGCATGTTCCCCATCCAGTACCCAC 1769859 Query 94403 ACCTCTGGGAACTCTATAAGAAGGCTCAAATGAGTAATT--GGACTGCTGAAGAGGTAGA 94460 | |||||||| | || ||||| || || | || || ||||||| || || || || Sbjct 1769858 AAATCTGGGAAATGTACAAGAAAGCCGAA--GCGTCCTTCTGGACTGCGGAGGAAGTGGA 1769801 Query 94461 TCTCTCAAAGGATTTGGACGATTGGAAGACTCTAAATGAAAATGAAAAGAAATTCATAAA 94520 | | || | || | | | ||| | | || | | | || ||| | ||||| || Sbjct 1769800 TTTGTCCCAAGACCTCCGCCACTGGGAAAACCTCACTTCTGACGAGAAGCATTTCATCAA 1769741 Query 94521 ATACATCCTGGCATTCTTTGCTGGATCCGATGGAATTGTTTTTGAGAATATCAATAACAA 94580 | || | || || ||||| || | || ||||| |||||||| ||||| | | Sbjct 1769740 ACACGTTCTCGCCTTCTTCGCCGCCTCTGATGGCATTGTTTTGGAGAACCTTGCTGGACG 1769681 Query 94581 CTTTGCTGATGAGGTGCAATCCTCTGAAGCGAGATCCTTCTATGCGTATCAG--TGTCAT 94638 ||| | || || || ||| || || | ||||||||| || |||| || ||| Sbjct 1769680 CTTCATGAAGGAAGTTCAGGTCTCCGAGGCTCGTGCCTTCTATGGGTTTCAGATTGCCAT 1769621 Query 94639 AATGAAATGGTGCATGGGGAGACATACAGTAAACTCATAGACAAGTATATTAAGGATGGT 94698 ||| | | ||| |||| || ||| | | || ||||| |||||| Sbjct 1769620 --TGAGAACATCCATTCCGAGATGTATAGTCTTTTGCTTGAATCCTATATAAAGGATTCG 1769563 Query 94699 GCTGAGAAGAAGCAGCTCTTTGAAGCCATCCAAACAGTTCCGTGTATTCAAAAGAAAGCG 94758 || |||||||| ||| ||| || ||| | || || || ||| | | ||||| || Sbjct 1769562 GCCGAGAAGAACATGCTTTTTCGCGCAATCGAGACTGTCCCATGTGTGGAGAAGAAGGCT 1769503 Query 94759 GATTGGGCTATGAAGTGGTTTGATACAAAGTCGCGTTCCTTTGCTGAGCGACTCTTCGCA 94818 | |||||| | ||| | ||| || | ||||| || ||| | ||| | Sbjct 1769502 AAATGGGCTTTACGCTGGATCGATGGC---TCTGAAACTTTTGCCGAACGATTAATCGGA 1769446 Query 94819 TTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAG 94878 ||||| ||||| || || || || ||||| || |||||| || || | |||||| ||| Sbjct 1769445 TTTGCTTGTGTGGAAGGCATATTTTTCTCGGGAAGCTTCTGTGCAATATTTTGGCTGAAG 1769386 Query 94879 AAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGA 94938 ||||| ||| | ||||| ||| | ||||||||||| | ||||| || || ||||| Sbjct 1769385 AAGCGTGGTTTGATGCCGGGTTTAACTTTCTCCAACGAATTAATCTCACGGGATGAGGGT 1769326 Query 94939 CTCCACCAAGAGTTTGCG 94956 | ||| || |||||| Sbjct 1769325 TTGCACTGCGATTTTGCG 1769308 >seq14 Length=4882680 Score = 111 bits (122), Expect = 2e-19 Identities = 277/413 (67%), Gaps = 6/413 (1%) Strand=Plus/Minus Query 9557 TCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGT-TTCATTATCAAA 9615 || || |||||| | || || || || || || |||| ||||| || ||| | ||||| Sbjct 2614418 TCGAGAATATCAGCACGGTTAGTAGCTGCAATAACAATTATACCAGTATTCCCT-TCAAA 2614360 Query 9616 ACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCAT 9675 ||||||||| |||||||| || ||||| | ||||| |||| ||||||||| || Sbjct 2614359 ACCATCCATTTCTGTCAAGAGCTGGTTTAGCGTTTGCTCCCTTTCATCATTGCCTCCACC 2614300 Query 9676 ACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCATGG 9735 | ||||| | | ||| || || |||||||| ||||||| || || ||||| || Sbjct 2614299 AATACCAGTTCCTCTTTGACGGCCAACAGCATCAATTTCATCAACAAACACAATGCAGGG 2614240 Query 9736 TTGATTTT-CGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAA 9794 ||||| | | | ||| ||| ||||| || || | ||| || || ||||||| Sbjct 2614239 AGCATTTTCCTTGGCCTTCTTGAAA-AGATCACGGACTCTTGAGGCACCGACTCCAACAA 2614181 Query 9795 ACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGCA 9853 ||||||| ||||| | | | ||| || | || || || ||| | |||||| || Sbjct 2614180 ACATCTCAACAAACTCAGAACCTGAA-ATCGAGAAAAATGGAACACCTGCTTCACCAGCG 2614122 Query 9854 ATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGT 9913 || || || || | ||||| || |||||||| ||| | || || | || Sbjct 2614121 ATTGCCTTTGCTAGCAATGTCTTTCCAGTACCTGGAGGACCAACAAGAAGAACTCCCTTA 2614062 Query 9914 GGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCAC 9966 ||||| ||||| || | |||||||||| | ||| || || ||||| Sbjct 2614061 GGAATACGAGCGCCCACAGCAGTGAATCTCTCAGGCTTCTTCAGGAATTCCAC 2614009 >seq13 Length=5050363 Score = 96.9 bits (106), Expect = 4e-15 Identities = 570/907 (63%), Gaps = 17/907 (2%) Strand=Plus/Plus Query 94345 GAACCTCTCCTAGCCCCCACACTAAACAGATTTACTGTGTTCCCCCTGAAGTATCCACAC 94404 ||||||||||| || |||| | || | || | |||||||| | | || ||||| Sbjct 3175609 GAACCTCTCCTCGCTCCCAACCCCGACCGCTTCTGTATGTTCCCCATTCACTACCCACAG 3175668 Query 94405 CTCTGGGAACTCTATAAGAAGGCTCAAATGAGTAATT--GGACTGCTGAAGAGGTAGATC 94462 ||||||| | || || || || || | | || |||| || || || || ||| Sbjct 3175669 GTCTGGGAGATGTACAAAAAAGCAGAA--GCTTCCTTCTGGACCGCCGAGGAAGTTGATT 3175726 Query 94463 TCTCAAAGGATTTGGACGATTGGAAGACTCTAAATGAAAATGAAAAGAAATTCATAAAAT 94522 | || |||| | | ||||| | | || | | || ||| | ||| | ||| Sbjct 3175727 TATCTCAGGACCTCCGCCATTGGGAAGCCCTCACCTCCGACGAGAAGCATTTCGTCAAAC 3175786 Query 94523 ACATCCTGGCATTCTTTGCTGGATCCGATGGAATTGTTTTTGAGAATATCAATAACAACT 94582 || |||| || |||||||||| |||||||| || ||||| || ||| || | || Sbjct 3175787 ACGTCCTCGCCTTCTTTGCTGCCTCCGATGGTATCGTTTTGGAAAATCTCGCTGGACGCT 3175846 Query 94583 TTGCTGATGAGGTGCAATCCTCTGAAGCGAGATCCTTCTATGCGTATCAG--TGTCATAA 94640 | | ||||| || ||| || || | ||||||| | | || || ||| Sbjct 3175847 TCATGAAAGAGGTCCAGATCTCCGAGGCCCGTGCCTTCTACGGCTTCCAAATTGCCAT-- 3175904 Query 94641 TGAAATGGTGCATGGGGAGACATACAGTAAACTCATAGACAAGTATATTAAGGATGGTGC 94700 ||| | | ||| |||| |||||| || | || || || || || || Sbjct 3175905 TGAGAACATTCATTCCGAGATGTACAGTCTTCTGCTTGAGTCTTACATCAAAGACTCGGC 3175964 Query 94701 TGAGAAGAAGCAGCTCTTTGAAGCCATCCAAACAGTTCCGTGTATTCAAAAGAAAGCGGA 94760 ||||| || || ||||| || || | || ||||| || | ||||||| || | Sbjct 3175965 CGAGAAAAACCACCTCTTCCGCGCAATTGAGACCGTTCCTTGCGTGGAAAAGAAGGCCAA 3176024 Query 94761 TTGGGCTATGAAGTGGTTTGATACAAAGTCGCGTTCCTTTGCTGAGCGACTCTTCGCATT 94820 ||||| ||| ||| ||||| || |||||||||||||| | |||| || Sbjct 3176025 GTGGGCCATGCGCTGGATTGATGGC---TCTGAATCCTTTGCTGAGCGGTTAGTCGCCTT 3176081 Query 94821 TGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAA 94880 ||| ||||||||||| || || ||||| || ||||||||| || | |||| | || || Sbjct 3176082 TGCTTGTGTTGAGGGGATATTTTTCTCGGGGAGCTTCTGCGCCATATTTTGGTTGAAAAA 3176141 Query 94881 GCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACT 94940 ||| || | ||||| || | |||||||| || | || || || || || || | Sbjct 3176142 GCGCGGGATGATGCCGGGCTTGACTTTCTCCAATGAATTAATTTCGCGAGATGAAGGTTT 3176201 Query 94941 CCACCAAGAGTTTGCGGTGGAACTTTTCAAATTATTGCGTATTAAACCAACGACTGAGAC 95000 || || |||||| |||| || || ||| || || | | |||| Sbjct 3176202 GCATTGTGATTTTGCGTGCCTGCTTTACAGTTTGTTGAAAATGAAGCTGAGTGAGGAGAA 3176261 Query 95001 TATTCATTCTATTGTTAAGGAAGCCGTTGAGATTGAGAAAGGATTCATATTGGATGCCCT 95060 | | || || ||| || || | || |||| | || | | ||||| || Sbjct 3176262 AGTGAAAGGAATAGTGGCGGACGCAGTGAATATAGAGAGGGAGTTTGTGTGTGATGCGCT 3176321 Query 95061 TCCATGCGCTCTCATCGGTATGAATTCTGAAAAAATGTCTGAATATATTGAGTATGTATC 95120 || ||||| || | || |||||| || ||| | || ||||| | ||| | Sbjct 3176322 GCCTTGCGCGCTGGTGGGGATGAATGGAGATTTGATGAGCCAGTACATTGAATTTGTGGC 3176381 Query 95121 TGATAGATTGTTGAAGCAGATCGGGGTGCCTCCAATTTGGAAC---TCCAAGAATCCATT 95177 ||||||| ||||||| | | ||| || ||| | | | | |||||||||| Sbjct 3176382 TGATAGACTGTTGAA--TGCTTTGGGCTATGGAAAGTTGTACCATGTGC-AGAATCCATT 3176438 Query 95178 TGACTTCATGGAGAACATTAGCCTCGACGGGAAGACAAACTTCTTCGAAAAGAGGGTTGG 95237 ||| | ||||| ||||| | | ||||| ||||||||||| || ||||||||||| Sbjct 3176439 TGATTGGATGGAATTGATTAGTTTGCAAGGGAAAACAAACTTCTTTGAGAAGAGGGTTGG 3176498 Query 95238 GGACTAT 95244 ||| ||| Sbjct 3176499 GGAATAT 3176505 >seq2 Length=18500646 Score = 96.9 bits (106), Expect = 4e-15 Identities = 232/342 (68%), Gaps = 18/342 (5%) Strand=Plus/Minus Query 9556 ATCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTG--TTTCATTATCA 9613 |||||| | ||| | ||| ||||| || | ||| | || ||| | || | | | | Sbjct 3972085 ATCAAGAACATCCGGCCTATTGGTCGCTGCCAAGACTATAACACCAGAATTACCTGA--A 3972028 Query 9614 AAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 9673 || |||||||| || ||||| || || |||||||| || || | ||||||||| | | Sbjct 3972027 AATCCATCCATTTCAGTCAAGAGCTGATTAATAGTCTGCTCTCTTTCATCATTTCC---C 3971971 Query 9674 ATACCA---CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATG 9730 |||| || || | | |||| | ||||| |||||||| ||||||||||| || ||| Sbjct 3971970 CCACCAAGTCCTGCCCCTCTTTGCCTACCCACAGCATCAATTTCATCAATGAACACAATG 3971911 Query 9731 CATGGTTGATTTTCGCGAGCGACT--TCAAAGAGATCCCGTACACGCTTG--GCGCCCAC 9786 || || | ||| | | | || ||||| | ||||| ||| |||| || || || Sbjct 3971910 CAAGG-AGCTTTAGACTTG-GCCTTATCAAACAAATCCC--TCACTCTTGAAGCTCCAAC 3971855 Query 9787 ACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTC 9846 ||| ||||||| ||| ||||| | || || | ||| | ||| || || | ||| Sbjct 3971854 ACCTACAAACAACTCTACAAACTCTGATGCAGCACAGGAAAAGAACGGTACCCCTGCTTC 3971795 Query 9847 ACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9888 ||| || | || | || | ||| ||||| || ||||| || Sbjct 3971794 ACCAGCCACTGCCCTTGCCAAAAGGGTCTTTCCAGTACCGGG 3971753 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583142427220640