Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sesamum_20indicum_20[refseq_20GCF_5F000512975.1_202014-01-06] 16,236 sequences; 275,059,498 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq15 132 5e-26 >seq15 Length=10047770 Score = 132 bits (146), Expect = 5e-26 Identities = 390/594 (66%), Gaps = 8/594 (1%) Strand=Plus/Minus Query 59523 GACCCTATTCTCGCGCCGAGCACCGCGCGTTTCACAACCTTTCCTATACGGTACCCGGAT 59582 || ||| | ||||| || | | ||| || ||| | || || || | |||||| | Sbjct 1769916 GAACCTCTCCTCGCCCCCAACCCCGACCGCTTCTGCATGTTCCCCATCCAGTACCCACAA 1769857 Query 59583 CTGTGGGCCCTGTATAAGAAAGCGATCGGTTCATTCTGGTCCGTCGAGGAGATTGACCTC 59642 | |||| |||| |||||||| | || |||||| | | ||||| | || | Sbjct 1769856 ATCTGGGAAATGTACAAGAAAGCCGAAGCGTCCTTCTGGACTGCGGAGGAAGTGGATTTG 1769797 Query 59643 GCCGGAGACCTGAAGGATTGGGACAAGCTCAATTACGACGAGCAGCATTTCATCAAGATG 59702 || |||||| | ||||| || |||| || |||||| ||||||||||||| Sbjct 1769796 TCCCAAGACCTCCGCCACTGGGAAAACCTCACTTCTGACGAGAAGCATTTCATCAAACAC 1769737 Query 59703 GTCCTGGCCTTCTTCGCGGCGAGTGATGGAATTGTGATGGAAAATATAGACATGAACTTT 59762 || || ||||||||||| || |||||| ||||| |||| || | | || || | Sbjct 1769736 GTTCTCGCCTTCTTCGCCGCCTCTGATGGCATTGTTTTGGAGAACCTTGC--TGGACGCT 1769679 Query 59763 TCC--AAGGATGTCCAGATTGCCGAGGCCCGGTCGTTCTACGCGTATCAGTCGTTCAACG 59820 || ||||| || ||| | ||||||| || | ||||| | || |||| || | Sbjct 1769678 TCATGAAGGAAGTTCAGGTCTCCGAGGCTCGTGCCTTCTATGGGTTTCAGATTGCCATTG 1769619 Query 59821 AGTCTATCCACTCCGAGACGTACTCGCTCATGATCGATAAGTTGGTCAAGGATCCGGAAG 59880 || ||||| ||||||| ||| || || | || | | |||||| ||| | Sbjct 1769618 AGAACATCCATTCCGAGATGTATAGTCTTTTGCTTGAATCCTATATAAAGGATTCGGCCG 1769559 Query 59881 AGAAGGCTGGTCTGTTCCGTGCCATAGAGAC-GTCCCCCGCAGTTAAACAAAAAGCAGAA 59939 ||||| || || || || || ||||| ||||| | || | | || || || Sbjct 1769558 AGAAGAACATGCTTTTTCGCGCAATCGAGACTGTCCCATGT-GTGGAGAAGAAGGCTAAA 1769500 Query 59940 TGGGCCATGCAGTGGAT-GAGTCCTGGAGCATCATTTGCACAACGTCTCATAGCTTTTGC 59998 ||||| | | ||||| || || | | | ||||| |||| | || | ||||| Sbjct 1769499 TGGGCTTTACGCTGGATCGATGGCTCT-GAAACTTTTGCCGAACGATTAATCGGATTTGC 1769441 Query 59999 ATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCG 60058 || |||||||| || || ||||| || |||||||| || || ||||| || ||||| Sbjct 1769440 TTGTGTGGAAGGCATATTTTTCTCGGGAAGCTTCTGTGCAATATTTTGGCTGAAGAAGCG 1769381 Query 60059 TGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGGG 60112 ||| | |||||||| | | |||||||||||| | || || ||||| ||||| Sbjct 1769380 TGGTTTGATGCCGGGTTTAACTTTCTCCAACGAATTAATCTCACGGGATGAGGG 1769327 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548413476891840