Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sesamum_20indicum_20[refseq_20GCF_5F000512975.1_202014-01-06] 16,236 sequences; 275,059,498 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq13 113 5e-20 seq15 100 3e-16 seq9 91.5 2e-13 seq3 89.7 6e-13 seq7 86.0 7e-12 seq12 82.4 8e-11 seq2 82.4 8e-11 >seq13 Length=5050363 Score = 113 bits (124), Expect = 5e-20 Identities = 353/535 (66%), Gaps = 14/535 (3%) Strand=Plus/Minus Query 74738 GTAAAGC-GTCACGGCAAACTCCTGATGCGAGCCTTCATCTCTGCTTATCAATTCATTCG 74796 ||||||| | |||| |||| || |||| | |||||||||| || |||||||| | Sbjct 3176229 GTAAAGCAGGCACG-CAAAATCACAATGCAAACCTTCATCTCGCGAAATTAATTCATTGG 3176171 Query 74797 AAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAAC 74856 | || | | ||| ||||| | || ||||| ||||||||||| ||||| |||||| | Sbjct 3176170 AGAAAGTCAAGCCCGGCATCATCCCGCGCTTTTTCAACCAAAATATGGCGCAGAAGCTCC 3176111 Query 74857 CACTGAAGAAGATGCCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAACGGTGCAT 74916 | ||| || || || || ||||| ||||||||||| | || | || || | | || Sbjct 3176110 CCGAGAAAAATATCCCCTCAACACAAGCAAAGGCGACTAACCGCTCAGCAAAGGATTCAG 3176051 Query 74917 CGGAAGTCATCCAAGTCTGAGCCCATTCAGCTTTTCGTTTGACCGC-AGGGACAGTATCG 74975 | | ||||| | ||||| | || ||| ||| ||| ||| || || || Sbjct 3176050 AGCCATCAATCCAGCGCATGGCCCACTTGGC-CTTCTTTTCCACGCAAGGAACGGTCTCA 3175992 Query 74976 ATCGCTTGGAAGAGGCTTGCCTTCTCTTCGG--GA-TCCTTGACGAGCTTGTCAATCATA 75032 || || |||||||| || || || |||| || || |||| | |||| || | Sbjct 3175991 ATTGCGCGGAAGAGG--TGGTTTTTC-TCGGCCGAGTCTTTGATGTAAGACTCAAGCAGA 3175935 Query 75033 AGTGAGTACGTCTCCGAATGAATCGACTCGTTGAACGACTGGTACGCGTAGAAAGACCGC 75092 || |||| |||| |||||||| ||| || ||| | ||||||| | || Sbjct 3175934 AGACTGTACATCTCGGAATGAATGTTCTCAATGGCAATTTGGAAGCCGTAGAAGGCACGG 3175875 Query 75093 GCCTCTGCAATCTGTACATCCTT--TGAAAAATTCATGTCGATATTCTCCATGACGATGC 75150 ||||| | ||||| || || || |||| | || ||| ||| |||| ||||| | Sbjct 3175874 GCCTCGGAGATCTGGACCTCTTTCATGAAGCGTCCA--GCGAGATTTTCCAAAACGATAC 3175817 Query 75151 CGTCCGAGGCGGCGAAAAAAGCCAGTACCATTTTGATAAAGTGGCGCTCATCGTCAGTGA 75210 | || ||||| || || || || || || ||||| || || ||| ||| |||| Sbjct 3175816 CATCGGAGGCAGCAAAGAAGGCGAGGACGTGTTTGACGAAATGCTTCTCGTCGGAGGTGA 3175757 Query 75211 GTTTGTCCCAATCCTTCAGGTCCCCCGCCAAATCAATCTCCTCGACCGTCCAGAA 75265 | ||||||| |||||| | ||||||| |||||| | |||||||| Sbjct 3175756 GGGCTTCCCAATGGCGGAGGTCCTGAGATAAATCAACTTCCTCGGCGGTCCAGAA 3175702 >seq15 Length=10047770 Score = 100 bits (110), Expect = 3e-16 Identities = 318/486 (65%), Gaps = 8/486 (2%) Strand=Plus/Plus Query 74784 ATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGATG 74843 || ||||| || || || | | || ||||| | ||||||||||||| |||||| || Sbjct 1769342 ATTAATTCGTTGGAGAAAGTTAAACCCGGCATCAAACCACGCTTCTTCAGCCAAAATATT 1769401 Query 74844 GCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCGACAAGGCGTTGC 74903 ||||||||| || ||| || |||||||| ||||| ||||| ||| | |||| Sbjct 1769402 GCACAGAAGCTTCCCGAGAAAAATATGCCTTCCACACAAGCAAATCCGATTAATCGTTCG 1769461 Query 74904 GCGAACGGTGCATCGGAAGTCATCCAAGTCTGAGCCCATTCAGCTTTTCGTTTGACCGCA 74963 || || | | || | | ||||| |||||||| ||| ||| | | | || Sbjct 1769462 GCAAAAGTTTCAGAGCCATCGATCCAGCGTAAAGCCCATTTAGC-CTTCTTCTCCACACA 1769520 Query 74964 -GGGACAGTATCGATCGCTTGGAAGAGGCTTGCCTTCTCTTCGGGATCCTTGA-CGAGCT 75021 |||||||| ||||| || | || || | |||||| | | |||||| | || Sbjct 1769521 TGGGACAGTCTCGATTGCGCGAAAAAGCATGTTCTTCTCGGCCGAATCCTTTATATAGGA 1769580 Query 75022 TGTCAATCATAAGTGAGTACGTCTCCGAATGAATCGACTCGTTGAACGACTGGTACGCGT 75081 | |||| || ||| ||| |||| ||||| || ||| || ||| || | | Sbjct 1769581 T-TCAAGCAAAAGACTATACATCTCGGAATGGATGTTCTCAATGGCAATCTGAAACCCAT 1769639 Query 75082 AGAAAGACCGCGCCTCTGCAATCTGTACATCCTT--TGAAAAATTCATGTCGATATTCTC 75139 |||| | || ||||| | | ||| || ||||| |||| | || | | ||||| Sbjct 1769640 AGAAGGCACGAGCCTCGGAGACCTGAACTTCCTTCATGAAGCGTCCA--GCAAGGTTCTC 1769697 Query 75140 CATGACGATGCCGTCCGAGGCGGCGAAAAAAGCCAGTACCATTTTGATAAAGTGGCGCTC 75199 || || ||||| || ||||||||||| || || || || |||||| || || ||| Sbjct 1769698 CAAAACAATGCCATCAGAGGCGGCGAAGAAGGCGAGAACGTGTTTGATGAAATGCTTCTC 1769757 Query 75200 ATCGTCAGTGAGTTTGTCCCAATCCTTCAGGTCCCCCGCCAAATCAATCTCCTCGACCGT 75259 || |||||| || ||||| | ||||| | |||||| | ||||| | || Sbjct 1769758 GTCAGAAGTGAGGTTTTCCCAGTGGCGGAGGTCTTGGGACAAATCCACTTCCTCCGCAGT 1769817 Query 75260 CCAGAA 75265 |||||| Sbjct 1769818 CCAGAA 1769823 Score = 86.0 bits (94), Expect = 7e-12 Identities = 67/79 (85%), Gaps = 1/79 (1%) Strand=Plus/Plus Query 79620 CAGACTGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-A 79678 || |||||| ||| |||| | || |||| ||||||||||||||||||||||||||| | Sbjct 4253855 CAAACTGCTCTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAA 4253914 Query 79679 CCAATTGAGCTACGAAAGC 79697 |||| |||||||||| ||| Sbjct 4253915 CCAACTGAGCTACGAGAGC 4253933 >seq9 Length=12411895 Score = 91.5 bits (100), Expect = 2e-13 Identities = 66/75 (88%), Gaps = 1/75 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 5727513 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 5727454 Query 79684 TGAGCTACGAAAGCA 79698 ||||||||||||||| Sbjct 5727453 TGAGCTACGAAAGCA 5727439 >seq3 Length=24928530 Score = 89.7 bits (98), Expect = 6e-13 Identities = 65/74 (88%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 21545035 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 21544976 Query 79684 TGAGCTACGAAAGC 79697 |||||||||||||| Sbjct 21544975 TGAGCTACGAAAGC 21544962 >seq7 Length=11725536 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 7092972 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 7092913 Query 79684 TGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 7092912 TGAGCTATGAAAGC 7092899 >seq12 Length=6373461 Score = 82.4 bits (90), Expect = 8e-11 Identities = 64/75 (85%), Gaps = 1/75 (1%) Strand=Plus/Minus Query 79624 CTGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAA 79682 |||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 2797042 CTGCTTTCATTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAA 2796983 Query 79683 TTGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 2796982 CTGAGCTATGAAAGC 2796968 >seq2 Length=18500646 Score = 82.4 bits (90), Expect = 8e-11 Identities = 64/75 (85%), Gaps = 1/75 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 8197858 TGCTTTCATTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 8197799 Query 79684 TGAGCTACGAAAGCA 79698 |||||||| |||||| Sbjct 8197798 TGAGCTACAAAAGCA 8197784 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547104942512800