Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sesamum_20indicum_20[refseq_20GCF_5F000512975.1_202014-01-06] 16,236 sequences; 275,059,498 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq5 98.7 7e-16 seq14 93.3 3e-14 seq11 87.8 1e-12 >seq5 Length=18898134 Score = 98.7 bits (108), Expect = 7e-16 Identities = 141/194 (73%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| |||||||||||||| |||||||||||| || || |||| || || ||| | Sbjct 2599559 ATGCAGATTTTTGTGAAAACCCTTACTGGGAAAACCATCACTCTTGAGGTTGAGAGCTCA 2599500 Query 27850 G--ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 | || || ||||| |||||| ||| || |||||||| || ||||| || | Sbjct 2599499 GATACCATTGACAAT--GTCAAAGCAAAGATCCAGGACAAAGAGGGGATTCCGCCTGATC 2599442 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCA-GCTTGTCCGATTAC 27966 |||||||| |||| ||||| || || ||| | || || | || | |||| | |||||| Sbjct 2599441 AGCAACGGCTAATATTTGCTGGGAAGCAACTTGAGGATGGGCGAACTCTTG-CAGATTAC 2599383 Query 27967 AACATCCAAAAAGA 27980 || ||||| || || Sbjct 2599382 AATATCCAGAAGGA 2599369 Score = 95.1 bits (104), Expect = 9e-15 Identities = 138/193 (72%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| |||||||| ||||||||||| ||| |||||| | || || |||||| | Sbjct 2599331 ATGCAAATATTTGTGAAGACTCTTACTGGTAAAACTATTACCCTGGAAGTTGAAAGCTCA 2599272 Query 27850 G--ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 | || || ||||| |||||| |||||| ||||| || || |||| || | Sbjct 2599271 GACACAATTGACAAT--GTCAAAGCAAAAATTCAGGACAAGGAGGGGATTCCTCCAGACC 2599214 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| | || || ||||| || |||||| | || || | | | | |||| | ||||||| Sbjct 2599213 AGCAGAGATTGATCTTTGCTGGCAAACAACTTGAGGATGGAAGGACCTTGGCAGATTACA 2599154 Query 27968 ACATCCAAAAAGA 27980 | || || || || Sbjct 2599153 ATATTCAGAAGGA 2599141 >seq14 Length=4882680 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || || |||||||||||||| || || || || |||| || ||||| | Sbjct 1411875 ATGCAGATCTTCGTGAAAACTCTTACAGGCAAGACCATCACCCTTGAGGTGGAAAGTTCG 1411816 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || |||| || || || || ||||| ||||| |||| ||| | Sbjct 1411815 GACACCATCGACAAC--GTTAAGGCCAAGATCCAGGACAAGGAAGGAATTCCCCCGGACC 1411758 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| ||||||| || |||||||| || | || |||| ||||| | | |||| |||| Sbjct 1411757 AGCAGAGGTTAATCTTCGCCGGAAAGCAGCTTGAAGACGGACGCACCCTCGCCGACTACA 1411698 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||| || ||| || | || ||||| |||||| | ||||| || Sbjct 1411697 ACATCCAGAAGGAGTCTACCCTTCACTTGGTCTTGCGTCTCCGTGGTGG 1411649 Score = 87.8 bits (96), Expect = 1e-12 Identities = 159/231 (69%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 |||||||||||| ||||| || || || || || || || |||| || |||||| | Sbjct 1411420 AATGCAAATTTTCGTGAAGACCCTCACAGGCAAGACCATCACCCTTGAGGTGGAAAGCTC 1411361 Query 27849 CGACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 |||| || ||||| ||||| || || ||||| ||||| | || ||| Sbjct 1411360 CGACACCATTGACAAT--GTCAAGGCCAAGATCCAGGACAAGGAAGGAATCCCCCCGGAC 1411303 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 ||||| |||| || || || || ||||| | || |||| |||| | | |||| ||| Sbjct 1411302 CAGCAGAGGTTGATCTTCGCTGGCAAACAGCTCGAGGACGGTCGCACCCTTGCCGACTAC 1411243 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017 |||||||| || ||| || | || ||||| ||||| | ||||| ||| Sbjct 1411242 AACATCCAGAAGGAGTCTACCCTCCACTTGGTCCTGCGTCTCCGTGGAGGC 1411192 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| ||||| ||||| || ||||| ||||| || || |||| || || ||| | Sbjct 1410735 ATGCAGATTTTCGTGAAGACCCTTACAGGGAAGACCATCACCCTTGAAGTTGAGAGCTCG 1410676 Query 27850 GA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || | || |||| ||||| ||| || ||||| || ||| | || ||| | Sbjct 1410675 GATACCATTGACAAC--GTCAAGGCAAAGATCCAGGACAAGGAGGGTATCCCACCGGACC 1410618 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| |||| || || || |||||||| ||||| || | | | | | || | || |||| Sbjct 1410617 AGCAGAGGTTGATCTTCGCTGGAAAACAGTTGGAGGATGGAAGGACCCTGGCTGACTACA 1410558 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||||||| ||| |||| | || | || | ||| | ||||| || Sbjct 1410557 ACATCCAAAAGGAGTCCACTCTCCACCTTGTCCTCCGTCTCCGTGGTGG 1410509 >seq11 Length=15446199 Score = 87.8 bits (96), Expect = 1e-12 Identities = 163/235 (69%), Gaps = 12/235 (5%) Strand=Plus/Minus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 |||||| || ||||| || || || || ||||| ||| || | || || |||||| | Sbjct 13254306 AATGCAGATCTTTGTCAAGACCCTCACAGGGAAGACTATAACCCTGGAAGTGGAAAGCTC 13254247 Query 27849 CGA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 ||| |||| | ||| ||||| ||||| ||||| ||||| |||| || Sbjct 13254246 CGATACGATTGATAAT--GTCAAGGCGAAAATTCAGGACAAGGAAGGGATTCCTCCAGAC 13254189 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAG----CTTGTCCGA 27962 ||||| | || || |||||||| || ||| | || || | |||| |||| | || Sbjct 13254188 CAGCAGAGATTGATCTTTGCCGGGAAGCAACTTGAGGATG---GCAGGACCCTTG-CAGA 13254133 Query 27963 TTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017 |||||||||||| ||||| || |||||||||| |||||||| | || ||| Sbjct 13254132 TTACAACATCCAGAAAGAATCGACCCTGCATTTGGTGCTGCGTTTGAGGGGAGGC 13254078 Score = 86.0 bits (94), Expect = 4e-12 Identities = 137/195 (70%), Gaps = 4/195 (2%) Strand=Plus/Plus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 |||||| |||||||||||||| ||||| ||||| ||| || |||| || || ||| | Sbjct 11225060 AATGCAGATTTTTGTGAAAACCCTTACGGGGAAGACTATCACTCTTGAGGTGGAGAGCTC 11225119 Query 27849 CG--ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 | || || ||||| |||||| || || ||||| ||||| |||| || Sbjct 11225120 AGATACCATTGACAAT--GTCAAAGCGAAGATCCAGGACAAGGAAGGAATTCCTCCTGAT 11225177 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 ||||| | || || ||||| ||||| ||| | || || | || | | | | |||||| Sbjct 11225178 CAGCAGAGATTGATCTTTGCTGGAAAGCAACTTGAAGATGGCCGAACCCTTGCAGATTAC 11225237 Query 27967 AACATCCAAAAAGAG 27981 || |||||||| ||| Sbjct 11225238 AATATCCAAAAGGAG 11225252 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| |||||||| ||||| || || || || |||||| | || || || ||| | Sbjct 13442082 ATGCAGATTTTTGTAAAAACCCTGACGGGCAAGACTATTACCCTGGAAGTTGAGAGCTCT 13442141 Query 27850 GA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || | || ||||| || ||| |||||| ||||||||||| |||| || | Sbjct 13442142 GATACAATTGACAAT--GTAAAAGCAAAAATTCAGGACAAAGAAGGAATTCCACCAGATC 13442199 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 | || || | ||||| || || || || ||||| || | | | | || ||||||| | Sbjct 13442200 AACAGAGGCTGATTTTCGCTGGCAAGCAGTTGGAAGATGGAAGGACTCTGGCCGATTATA 13442259 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 | || || || ||| |||||||||||||| || | |||| || || Sbjct 13442260 ATATTCAGAAGGAGTCGACTTTGCATTTGGTCCTGAGGCTGCGCGGTGG 13442308 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355791983282772