Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sesamum_20indicum_20[refseq_20GCF_5F000512975.1_202014-01-06] 16,236 sequences; 275,059,498 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq11 91.5 1e-13 seq14 84.2 2e-11 >seq11 Length=15446199 Score = 91.5 bits (100), Expect = 1e-13 Identities = 164/233 (70%), Gaps = 10/233 (4%) Strand=Plus/Plus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 ||||| || ||||| || |||| ||| || || ||| ||||| || || || || ||| Sbjct 13253395 CCTCCCCTCAAGCGCAAGACCAGATGGAGAGTTGACTCCTTTTGGATGTTGTAGTCTGCA 13253454 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 ||||| | | || ||||||||||| || ||||| || | || |||||||| | || Sbjct 13253455 AGTGTCCTACCATCCTCAAGCTGTTTACCAGCAAAGATCAATCGTTGCTGGTCTGGAGGA 13253514 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTG-TTTGAGCGTCG-CCACCGTATCGCTCGA---CT 39232 | | ||||||||| ||| ||| || |||| ||| | | | ||||| ||| || Sbjct 13253515 ATACCTTCTTTGTCC-TGAATTTTTGCCTTGA-CGTTGTCTATTGTATC---CGAACTCT 13253569 Query 39233 CCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATC 39285 | || |||| || || | || || |||| || || |||||||| |||||| Sbjct 13253570 CAACCTCCAAAGTAATGGTCTTCCCAGTCAAGGTCTTGACAAAGATCTGCATC 13253622 Score = 82.4 bits (90), Expect = 7e-11 Identities = 169/249 (68%), Gaps = 8/249 (3%) Strand=Plus/Minus Query 39039 TAACTAAAATTTATTCAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTT 39098 |||| ||||||| || ||||| || | || || || | ||| || || ||| || Sbjct 11225988 TAACAAAAATTTG--CATCCCTCCCCTCAGCCGCAAGACAAGATGAAGAGTTGACTCCTT 11225931 Query 39099 TTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAG 39158 ||| || |||||||| ||||| |||| | || |||||||| || || ||||| || | Sbjct 11225930 TTGGATGTTATAATCAGCAAGAGTTCTGCCATCTTCAAGCTGCTTACCAGCAAAGATCAA 11225871 Query 39159 ACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCAC 39218 ||||||||||| | || | | ||||| ||| || ||| || | | | | Sbjct 11225870 GCGCTGCTGGTCCGGAGGAATACCTTCTTTATCCTGAATCTTCGCCTTAACATTGTCAAT 11225811 Query 39219 CGTATCGCTCGA---CTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAA 39275 ||||| ||| ||| || || | ||||| | ||||| |||| ||||| ||||| Sbjct 11225810 TGTATC---CGAACTCTCAACCTCTAAAGTGATGGTCTTTCCAGTCAAAGTTTTGACAAA 11225754 Query 39276 GATTTGCAT 39284 |||||||| Sbjct 11225753 TATTTGCAT 11225745 >seq14 Length=4882680 Score = 84.2 bits (92), Expect = 2e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 ||||||||| || ||| ||| || || || || || || ||||||||||| | || || Sbjct 1410982 CACCAAATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGCAAGTGTTCGCCCATCCTC 1411041 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 || ||||| || || || ||||| | ||||||||| | ||| | || ||| |||||| Sbjct 1411042 GAGTTGTTTACCAGCGAAGATAAGCCTCTGCTGGTCTGGGGGGATGCCCTCCTTGTCCTG 1411101 Query 39195 GATTTT 39200 ||| || Sbjct 1411102 GATCTT 1411107 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429460603127468