Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sesamum_20indicum_20[refseq_20GCF_5F000512975.1_202014-01-06] 16,236 sequences; 275,059,498 total letters Query= NC_030240.1 Length=128058 Score E Sequences producing significant alignments: (Bits) Value seq11 122 7e-23 seq6 98.7 8e-16 seq1 91.5 1e-13 seq5 82.4 6e-11 >seq11 Length=15446199 Score = 122 bits (134), Expect = 7e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 101012 CCGCCTCGCAATCTTAACACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCC 101071 || || |||| || | |||| |||||||| || || || |||||||| ||||||||| Sbjct 13442308 CCACCGCGCAGCCTCAGGACCAAATGCAAAGTCGACTCCTTCTGAATATTATAATCGGCC 13442249 Query 101072 ATAGTTTTGGAATCTTCCAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGC 101131 | ||| | ||||||||| || ||||| || | || ||||| ||||| ||| || Sbjct 13442248 AGAGTCCTTCCATCTTCCAACTGCTTGCCAGCGAAAATCAGCCTCTGTTGATCTGGTGGA 13442189 Query 101132 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACATCGGCCACCGTCTCTGTGGACGTTGTT 101191 | ||||||||||| ||||||| ||| |||| | | | || || | | | | Sbjct 13442188 ATTCCTTCTTTGTCCTGAATTTTTGCTTTTACATTGTCAATTGTATCAGAGCTCTCAACT 13442129 Query 101192 TCGACGGTAATAGTTTTGCCCGTCAATGTTTTAATAAAAATTTGCAT 101238 || | ||||||||| |||||||||| ||||| | |||||| ||||| Sbjct 13442128 TCCAGGGTAATAGTCTTGCCCGTCAGGGTTTTTACAAAAATCTGCAT 13442082 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 101029 CACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCCATAGTTTTGGAATCTTC 101088 ||||| || | ||| ||||| |||||||||||||| ||||| | |||| | ||| || Sbjct 13442063 CACCAAATGAAGAGTCGATTCCTTTTGAATATTGTAGTCGGCTAGAGTTCTACCATCCTC 13442004 Query 101089 CAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGCACGCCTTCTTTGTCGGC 101148 || |||||| || || | || | |||||| || || || | ||||| ||||| Sbjct 13442003 CAGTTGTTTTCCGGCGAAGATCAACCTTTGCTGATCGGGCGGTATCCCTTCCTTGTCCTG 13441944 Query 101149 AATTTTTTGTTTCACATCGGCCACCGTCTCTGTGGACGTTGTTTCGACGGTAATAGTTTT 101208 |||||| || || | | | | || |||| | | |||| ||| || ||||| Sbjct 13441943 AATTTTAGCCTTGACGTTGTCTATGGTGTCTGAGCTCTCCACCTCGAGGGTGATTGTTTT 13441884 Query 101209 GCCCGTCAATGTTTTAATAAAAATTTGCAT 101238 ||| |||| ||||| | ||| || ||||| Sbjct 13441883 GCCGGTCAGAGTTTTTACAAAGATCTGCAT 13441854 >seq6 Length=25289714 Score = 98.7 bits (108), Expect = 8e-16 Identities = 84/104 (81%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 101042 GTTGATTCTTTTTGAATATTGTAATCGGCCATAGTTTTGGAATCTTCCAATTGTTTGCCC 101101 || ||||||||||| ||||||||||| |||| ||| || ||||||||| ||||| || Sbjct 18207743 GTGGATTCTTTTTGGATATTGTAATCCGCCAGGGTTCTGCCATCTTCCAACTGTTTACCA 18207802 Query 101102 GCATATATAAGCCTTTGTTGGTCTACGGGCACGCCTTCTTTGTC 101145 ||| |||| ||||| || |||||| || | |||||||||||| Sbjct 18207803 GCAAATATTAGCCTCTGCTGGTCTGGAGGTATGCCTTCTTTGTC 18207846 >seq1 Length=18577331 Score = 91.5 bits (100), Expect = 1e-13 Identities = 94/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 101023 TCTTAACACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCCATAGTTTTGGA 101082 ||| || || | ||| | |||||||||||||||||||||||||| || | ||| || Sbjct 937600 TCTCAAAACAAGGTGAAGTGTTGATTCTTTTTGAATATTGTAATCTGCAAGGGTTCTGCC 937541 Query 101083 ATCTTCCAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGCACGCCTTCTTT 101142 ||||||||| ||||| || ||| | || ||||| || ||||| || | |||||||| Sbjct 937540 ATCTTCCAACTGTTTACCAGCAAAAATGAGCCTCTGCTGGTCAGGAGGTATACCTTCTTT 937481 Query 101143 GTC 101145 ||| Sbjct 937480 GTC 937478 >seq5 Length=18898134 Score = 82.4 bits (90), Expect = 6e-11 Identities = 158/231 (68%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 101010 TGCCGCCTCGCAATCTTAACACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGG 101069 |||| || | ||||| | ||| | || | || ||||| || |||||||||||||| | Sbjct 2599103 TGCCACCCCTCAATCGCAGCACAAGATGGAGGGTCGATTCCTTCTGAATATTGTAATCTG 2599162 Query 101070 CCATAGTTTTGGAATCTTCCAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGG 101129 ||| || | ||| || | ||||||||| ||| | || | || || |||||| | Sbjct 2599163 CCAAGGTCCTTCCATCCTCAAGTTGTTTGCCAGCAAAGATCAATCTCTGCTGGTCTGGAG 2599222 Query 101130 GCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACATCGGCCACCGTCTCTGTGGACGTT- 101188 | | || || ||||| ||||||| ||| |||| | | | || |||| | | || Sbjct 2599223 GAATCCCCTCCTTGTCCTGAATTTTTGCTTTGACATTGTCAATTGTGTCTGAG--CTTTC 2599280 Query 101189 -GTTTCGACGGTAATAGTTTTGCCCGTCAATGTTTTAATAAAAATTTGCAT 101238 ||| | |||||||||||| || || | || || | ||| |||||||| Sbjct 2599281 AACTTCCAGGGTAATAGTTTTACCAGTAAGAGTCTTCACAAATATTTGCAT 2599331 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 409579737857124