Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sesamum_20indicum_20[refseq_20GCF_5F000512975.1_202014-01-06] 16,236 sequences; 275,059,498 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq15 147 2e-30 seq13 120 3e-22 seq3 82.4 7e-11 >seq15 Length=10047770 Score = 147 bits (162), Expect = 2e-30 Identities = 412/632 (65%), Gaps = 8/632 (1%) Strand=Plus/Plus Query 4537 CAAACAATAAA-----CACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTC 4591 ||||| ||||| ||||||||||| || |||||||| || || | || | ||| Sbjct 1769290 CAAACTATAAAGCAAGCACGCAAAATCGCAGTGCAAACCCTCATCCCGTGAGATTAATTC 1769349 Query 4592 GTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAA 4651 ||| || || ||||| || ||||| ||||| | ||| || ||||||||||| || || Sbjct 1769350 GTTGGAGAAAGTTAAACCCGGCATCAAACCACGCTTCTTCAGCCAAAATATTGCACAGAA 1769409 Query 4652 TGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGA 4711 || || || ||||||||||| || ||||| | | |||||| | || | Sbjct 1769410 GCTTCCCGAGAAAAATATGCCTTCCACACAAGCAAATCCGATTAATCGTTCGGCAAAAG- 1769468 Query 4712 GCTGGCTTTGTCTTTAATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAAT 4771 | | | | | ||||| ||| ||||| ||||| || |||| || || || | Sbjct 1769469 --TTTCAGAGCCATCGATCCAGCGTAAAGCCCATTTAGCCTTCTTCTCCACACATGGGAC 1769526 Query 4772 TGTGTATATAGCGTTAAATAATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTAT 4831 || | || ||| ||| | | | || || | || | ||||| | || | Sbjct 1769527 AGTCTCGATTGCGCGAAAAAGCATGTTCTTCTCGGCCGAATCCTTTATATAGGATTCAAG 1769586 Query 4832 TAGTAGGCTATACATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCA 4891 | || |||||||| || ||||| || || || || ||||||||||| || || ||| Sbjct 1769587 CAAAAGACTATACATCTCGGAATGGATGTTCTCAATGGCAATCTGAAACCCATAGAAGGC 1769646 Query 4892 TCTAGCTTCTGTTACTTGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTAT 4951 | ||| || | || |||||||| || || | | | | | ||| || || || Sbjct 1769647 ACGAGCCTCGGAGACCTGAACTTCCTTCATGAAGCGTCCAGCAAGGTTCTCCAAAACAAT 1769706 Query 4952 ACCGTCACTGGCTGCAAAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTT 5011 || ||| ||| || || || || | ||| || || || | || ||||||| | Sbjct 1769707 GCCATCAGAGGCGGCGAAGAAGGCGAGAACGTGTTTGATGAAATGCTTCTCGTCAGAAGT 1769766 Query 5012 AAGTTTTTTCCAGTGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGA 5071 || |||| ||||||| | | |||| | ||||| ||||| || ||||||| || || Sbjct 1769767 GAGGTTTTCCCAGTGGCGGAGGTCTTGGGACAAATCCACTTCCTCCGCAGTCCAGAAGGA 1769826 Query 5072 CGCTTCCGCTTTTTTGTACATAGACCAAATATCAGGATACTGAATCGGAAGTATGACAAA 5131 |||||| ||||| |||||||| ||| || | || ||||| || || | ||| || Sbjct 1769827 CGCTTCGGCTTTCTTGTACATTTCCCAGATTTGTGGGTACTGGATGGGGAACATGCAGAA 1769886 Query 5132 TCTGTTGTCGTTAGGTGTAAGAAGCGGTTCTT 5163 | || | ||| || | || || ||||||| Sbjct 1769887 GCGGTCGGGGTTGGGGGCGAGGAGAGGTTCTT 1769918 >seq13 Length=5050363 Score = 120 bits (132), Expect = 3e-22 Identities = 570/896 (64%), Gaps = 21/896 (2%) Strand=Plus/Minus Query 4277 CTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCCATAAAATCAAACGGATT 4336 ||| || ||||| || ||||| |||| || ||| |||||| ||||||| ||||| Sbjct 3176490 CTTCTCAAAGAAGTTTGTTTTCCCTTGCAAACTAATCAATTCCATCCAATCAAATGGATT 3176431 Query 4337 AGTTGCGTTGTAATGTTTTTCACACTTTAGAGC-TACAAGCAATCGGTCAGCTACAAATT 4395 | | ||| ||| || | | ||| | ||| || || ||||| ||||||| Sbjct 3176430 CTGCACATGGTACAACTTTCCATAGCCCAAAGCATTCAA-CAGTCTATCAGCCACAAATT 3176372 Query 4396 CTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAAT-CTCACAGGTAGCGCGTAT 4454 | || ||||||||||| | || | || || || | | | || ||| ||||| | Sbjct 3176371 CAATGTACTGGCTCATCAAATCTCCATTCATCCCCACCAGCGCGCA-AGGCAGCGCATCA 3176313 Query 4455 GTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTATATCTTTTATTTTATCTTTA 4514 || |||||| |||||| | || || || | | ||| |||| | ||| || | | Sbjct 3176312 CACACAAACTCCCTCTCTATATTCACTGCGTCCGCCACTATTCCTTTCACTTTCTCCTCA 3176253 Query 4515 GATGGTTT-ATTTACTAAGTATCCAAACAATAAA-----CACGCAAAATCACAATGCAAA 4568 | || |||| | | ||||| |||| ||||||||||||||||||||| Sbjct 3176252 CTCAGCTTCATTTTCAA------CAAACTGTAAAGCAGGCACGCAAAATCACAATGCAAA 3176199 Query 4569 CCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTT 4628 ||||| |||| ||| | ||| || || || || || || ||||| | || | |||| Sbjct 3176198 CCTTCATCTCGCGAAATTAATTCATTGGAGAAAGTCAAGCCCGGCATCATCCCGCGCTTT 3176139 Query 4629 TTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAAC 4688 || | ||||||||| ||| || ||| || || ||||| || || || ||||| Sbjct 3176138 TTCAACCAAAATATGGCGCAGAAGCTCCCCGAGAAAAATATCCCCTCAACACAAGCAAAG 3176079 Query 4689 GCTACTAATCGGGACCCGAACGAGCTGGCTTTGTCTTTAATCCATTTTAATGCCCAGTTA 4748 || ||||| || | || || | | | | |||||| | ||||| || Sbjct 3176078 GCGACTAACCGCTCAGCAAAGGA---TTCAGAGCCATCAATCCAGCGCATGGCCCACTTG 3176022 Query 4749 GCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAATAATTTACTTTTTTCAAAT 4808 || || || | ||||| |||| || | || ||| || | | |||| || Sbjct 3176021 GCCTTCTTTTCCACGCAAGGAACGGTCTCAATTGCGCGGAAGAGGTGGTTTTTCTCGGCC 3175962 Query 4809 GGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATA 4868 | ||||| || |||| || | || || || ||||| || ||||| || || || || Sbjct 3175961 GAGTCTTTGATGTAAGACTCAAGCAGAAGACTGTACATCTCGGAATGAATGTTCTCAATG 3175902 Query 4869 GCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAATCTT 4928 ||||| || || ||||| ||| | || || | | || || || || || | | Sbjct 3175901 GCAATTTGGAAGCCGTAGAAGGCACGGGCCTCGGAGATCTGGACCTCTTTCATGAAGCGT 3175842 Query 4929 TCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATGAGAT 4988 | | | ||||| || ||||| || ||| ||||| || || | || || Sbjct 3175841 CCAGCGAGATTTTCCAAAACGATACCATCGGAGGCAGCAAAGAAGGCGAGGACGTGTTTG 3175782 Query 4989 ATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAGTTAAATCA 5048 | || | || ||||| | | || || ||| ||| | | || | || ||||||| Sbjct 3175781 ACGAAATGCTTCTCGTCGGAGGTGAGGGCTTCCCAATGGCGGAGGTCCTGAGATAAATCA 3175722 Query 5049 ACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTACATAGACCAAATATCAGGA 5108 ||||| || | ||||| || || ||||| |||||||||||||| ||| | | || Sbjct 3175721 ACTTCCTCGGCGGTCCAGAAGGAAGCTTCTGCTTTTTTGTACATCTCCCAGACCTGTGGG 3175662 Query 5109 TACTGAATCGGAAGTATGACA-AATCTGTTGTCGTTAGGTGTAAGAAGCGGTTCTT 5163 || ||||| || | || ||| || | || | ||| || | || || ||||||| Sbjct 3175661 TAGTGAATGGGGAACAT-ACAGAAGCGGTCGGGGTTGGGAGCGAGGAGAGGTTCTT 3175607 >seq3 Length=24928530 Score = 82.4 bits (90), Expect = 7e-11 Identities = 77/98 (79%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 4548 CACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAAT 4607 || ||||| || ||||||| ||| || ||||| ||| ||||| ||||| || || ||| Sbjct 1320255 CAAGCAAAGTCGCAATGCAGACCCTCATCTCTAGAAATAAGTTCATTAGAGAATGTCAAT 1320196 Query 4608 CCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGC 4645 || ||||| || ||||| || ||||||||||| || || Sbjct 1320195 CCCGGCATCAATCCTCTTTTCTTAAGCCAAAAAATGGC 1320158 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426965097026588