Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sesamum_20indicum_20[refseq_20GCF_5F000512975.1_202014-01-06] 16,236 sequences; 275,059,498 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq15 183 4e-41 seq13 161 1e-34 seq9 104 3e-17 >seq15 Length=10047770 Score = 183 bits (202), Expect = 4e-41 Identities = 567/874 (65%), Gaps = 14/874 (2%) Strand=Plus/Plus Query 47849 TTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATT 47908 ||| ||||| || ||||| | |||||| || |||||||| || |||| ||| ||| Sbjct 1769014 TTTCTGATACTCCCCCACTCTTTTCTCAAAGAAATTAGTCTTCCCTTGCAAACTTATTAA 1769073 Query 47909 TTCCATAAAATCAAATGGATTAACTGCATTATAAAtttttttAAATCCTAATTCTGAAAT 47968 ||||| ||||||| || || ||| ||| | || | | || ||| | | Sbjct 1769074 CTCCATCCAATCAAACGGGTTTTGGACATAATACAACTTCCCATACCCCAATGCATTCAG 1769133 Query 47969 CAGTCTATCTGCAACGAATTCTATATATCTTTTCATCATTTCACAATTCATTCCTATAA- 48027 || |||||| || || || | || || |||||| ||| | |||||| || | | Sbjct 1769134 CAATCTATCAGCCACAAACTTAATGTACTGACTCATCAATTCTCCATTCATCCCCACCAA 1769193 Query 48028 -GTTTAACTGGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTGACAGCATCCACTATT 48086 | || || || || || | |||||| ||| || || || ||| | | | Sbjct 1769194 CGCGCAA--GGCAGCGCATCGCACACAAACTCCCTTTCAATGTCCACCGCGTCCGCCACT 1769251 Query 48087 ATCGATGTTACCGTTTCCTC-----ACTTGGTGGATACAACAAATGTTTAAACATTAAAC 48141 |||| | || | ||||| |||| | | ||||||| | || || | | Sbjct 1769252 ATCGCCTTCACTTTCTCCTCGCTCAACTTCATT--TTCAACAAACTATAAAGCA---AGC 1769306 Query 48142 ATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGAC 48201 | |||||||| || || | ||| ||||| | ||||||||||| || || || | || Sbjct 1769307 ACGCAAAATCGCAGTGCAAACCCTCATCCCGTGAGATTAATTCGTTGGAGAAAGTTAAAC 1769366 Query 48202 CGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATA 48261 | ||||| | ||||| || || |||||||||||||| ||| ||| || || |||| Sbjct 1769367 CCGGCATCAAACCACGCTTCTTCAGCCAAAATATTGCACAGAAGCTTCCCGAGAAAAATA 1769426 Query 48262 TGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCGTTGTGTATCC 48321 ||||||| || |||||| || | | || || | || | | | | |||| Sbjct 1769427 TGCCTTCCACACAAGCAAATCCGATTAATCGTTCGGCAAAAGTTTCAGAGCCATCGATCC 1769486 Query 48322 ACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGA 48381 | ||| ||||| | ||||||||||| ||||| || | || || || || ||| | Sbjct 1769487 AGCGTAAAGCCCATTTAGCCTTCTTCTCCACACATGGGACAGTCTCGATTGCGCGAAAAA 1769546 Query 48382 GAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGG 48441 | | ||| || || ||| || | || | || | |||||||||||||| |||| Sbjct 1769547 GCATGTTCTTCTCGGCCGAATCCTTTATATAGGATTCAAGCAAAAGACTATACATCTCGG 1769606 Query 48442 AGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTA 48501 | || || || ||||| || |||||||| || || || | || || | || ||| | Sbjct 1769607 AATGGATGTTCTCAATGGCAATCTGAAACCCATAGAAGGCACGAGCCTCGGAGACCTGAA 1769666 Query 48502 CCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAA 48561 | ||| | || ||| |||| | ||||| || || |||||| || || || | Sbjct 1769667 CTTCCTTCATGAAGCGTCCAGCAAGGTTCTCCAAAACAATGCCATCAGAGGCGGCGAAGA 1769726 Query 48562 ATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTATTCCAGTCATTGA 48621 | || | || ||||| || |||| || |||| ||||| || || | ||||| || Sbjct 1769727 AGGCGAGAACGTGTTTGATGAAATGCTTCTCGTCAGAAGTGAGGTTTTCCCAGTGGCGGA 1769786 Query 48622 TATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTATACA 48681 |||| || | ||| ||||| || || ||||| || || || || ||||| || |||| Sbjct 1769787 GGTCTTGGGACAAATCCACTTCCTCCGCAGTCCAGAAGGACGCTTCGGCTTTCTTGTACA 1769846 Query 48682 TATTCCATATATCACTGTATTGGATTGGGAAAAT 48715 | | ||| || | ||| ||||| ||||| || Sbjct 1769847 TTTCCCAGATTTGTGGGTACTGGATGGGGAACAT 1769880 >seq13 Length=5050363 Score = 161 bits (178), Expect = 1e-34 Identities = 569/877 (65%), Gaps = 20/877 (2%) Strand=Plus/Minus Query 47850 TTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTT 47909 || |||||||| || || | ||||| || || || ||||| |||| ||| || | Sbjct 3176510 TTCTGATATTCCCCAACCCTCTTCTCAAAGAAGTTTGTTTTCCCTTGCAAACTAATCAAT 3176451 Query 47910 TCCATAAAATCAAATGGATTAACTGCA--TTATAAAtttttttAAATCCTAATTCTGAAA 47967 ||||| ||||||||||||| ||||| | || | ||| | | || || | | Sbjct 3176450 TCCATCCAATCAAATGGATT--CTGCACATGGTACAACTTTCCATAGCCCAAAGCATTCA 3176393 Query 47968 TCAGTCTATCTGCAACGAATTCTATATATCTTTTCATCATTTCACAATTCATTCCTATAA 48027 ||||||||| || || ||||| || || |||||| || | |||||| || | | Sbjct 3176392 ACAGTCTATCAGCCACAAATTCAATGTACTGGCTCATCAAATCTCCATTCATCCCCACCA 3176333 Query 48028 GTTTAACTGGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTGACAGCATCCACTATTA 48087 | || || || || | |||||| || ||| | || || ||| | | || Sbjct 3176332 GCGCGCAAGGCAGCGCATCACACACAAACTCCCTCTCTATATTCACTGCGTCCGCCACTA 3176273 Query 48088 TCGATGTTACCGTTTCCTCACTTGG-TGGATA--CAACAAATGTTTAAACATTAAACATG 48144 | | | || | |||||||| | | || ||||||| | || || || | Sbjct 3176272 TTCCTTTCACTTTCTCCTCACTCAGCTTCATTTTCAACAAACTGTAAAGCAGG---CACG 3176216 Query 48145 CAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGG 48204 ||||||||||||| | ||||||||||| ||||||||| || || || || | || | Sbjct 3176215 CAAAATCACAATGCAAACCTTCATCTCGCGAAATTAATTCATTGGAGAAAGTCAAGCCCG 3176156 Query 48205 GCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCA-GAAAAGAATATG 48263 |||| | || || ||||| | ||||||||| || || ||| ||| || || ||||| Sbjct 3176155 GCATCATCCCGCGCTTTTTCAACCAAAATATGGC-GCAGAAGCTCCCCGAGAAAAATATC 3176097 Query 48264 CCTTCTACGGCCGCAAATGCGG-TAAGTCTCTCTCCGTAACTGGCTTCGTTG---TGTAT 48319 || || || ||||| ||| ||| | ||| | || || ||| | | || Sbjct 3176096 CCCTCAACACAAGCAAAGGCGACTAAC---CGCTCAGCAAA-GGATTCAGAGCCATCAAT 3176041 Query 48320 CCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAA 48379 ||| || ||||| | |||||||| | || ||||| | || || || || || Sbjct 3176040 CCAGCGCATGGCCCACTTGGCCTTCTTTTCCACGCAAGGAACGGTCTCAATTGCGCGGAA 3175981 Query 48380 GAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTC 48439 ||| |||||| || ||||| | ||||| || | | |||||| ||||| || Sbjct 3175980 GAGGTGGTTTTTCTCGGCCGAGTCTTTGATGTAAGACTCAAGCAGAAGACTGTACATCTC 3175921 Query 48440 GGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTG 48499 ||| ||||| || ||||| || || || || ||||| || | || || | |||||| Sbjct 3175920 GGAATGAATGTTCTCAATGGCAATTTGGAAGCCGTAGAAGGCACGGGCCTCGGAGATCTG 3175861 Query 48500 TACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGCAAA 48559 ||||| | || ||| |||| | ||| || || || ||||| |||||||| Sbjct 3175860 GACCTCTTTCATGAAGCGTCCAGCGAGATTTTCCAAAACGATACCATCGGAGGCAGCAAA 3175801 Query 48560 AAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTATTCCAGTCATT 48619 || || | || ||||| | |||| || |||| ||| || || | ||| | Sbjct 3175800 GAAGGCGAGGACGTGTTTGACGAAATGCTTCTCGTCGGAGGTGAGGGCTTCCCAATGGCG 3175741 Query 48620 GATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTATA 48679 || || | |||| ||| ||||| || || ||||| || || || ||||||||||| || Sbjct 3175740 GAGGTCCTGAGATAAATCAACTTCCTCGGCGGTCCAGAAGGAAGCTTCTGCTTTTTTGTA 3175681 Query 48680 CATATTCCATATATCACTGTATTGGATTGGGAAAATA 48716 ||| | ||| | | ||| || || ||||| ||| Sbjct 3175680 CATCTCCCAGACCTGTGGGTAGTGAATGGGGAACATA 3175644 >seq9 Length=12411895 Score = 104 bits (114), Expect = 3e-17 Identities = 116/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 77897 CTCTCTTTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCC 77956 |||||| ||||| | ||| |||| ||||||||| || |||||| |||| | || || Sbjct 8674110 CTCTCTCTCATACTTAGTGTATAAAGCTTCAAATTCTTCACCCCAACAATCAGCTAACCC 8674051 Query 77957 AGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAA 78016 ||| ||||| || || | ||||||||| | |||| | ||||| || |||||| Sbjct 8674050 AGGAGCCTCATTCGGACAAAACAATGACCATTGTCCATTAGATTGAACTCTTTGCATAAA 8673991 Query 78017 GAGATCAGGTATCCATAGAGCAATAAATAGATCTC 78051 |||||||||| ||| |||||| ||||||||||| Sbjct 8673990 TAGATCAGGTACCCAAAGAGCATAAAATAGATCTC 8673956 Score = 89.7 bits (98), Expect = 7e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 78399 GTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTG 78458 ||||| ||||| || | || ||||||||||| || |||||| | ||| | |||| Sbjct 8673292 GTTCCAGCATTGAAAAGGGTAGGAGATGCATGAGTGAACCATCGCTGAGACAACAGATGA 8673233 Query 78459 TATGTTTCAATAGCTGATTCTATGTC-CCATTGATGAATTCCTACCGCTACACGCATCAA 78517 ||||||| ||| |||| || || || | ||| || || || || || || | |||||| Sbjct 8673232 TATGTTTTTATAACTGAATCAATATCATCCTTG-TGGATACCAACGGCAACCCTCATCAA 8673174 Query 78518 CATATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAA 78577 ||| || ||||| || ||||| ||| | | || |||| ||| || |||| | Sbjct 8673173 CATGTGTTGAGGCCTCTCAACAACCTTGCCTTGGACCTTTAACAGGTAAGACCTTTCAAG 8673114 Query 78578 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTCTCGTAAATAAT 78625 ||||| || ||||| || | || ||||||||| || || || || Sbjct 8673113 GGTTTTGAATCCAAAGTAATCATAGTCAAAGTCTCTGTCATATATGAT 8673066 Score = 89.7 bits (98), Expect = 7e-13 Identities = 155/223 (70%), Gaps = 2/223 (1%) Strand=Plus/Minus Query 78158 ACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 78217 ||| || ||||| | ||||| || |||| ||| | |||| | |||||||| ||| || Sbjct 8673618 ACCCCCTTGATCCACATATCGAGCTGTGTCATTGAACACTCGAAGCATTGGAACAATGCC 8673559 Query 78218 GTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGA 78277 || || ||||||||||||||| |||||||||||| | || || || ||| | || Sbjct 8673558 ATTGGAAGTTCCATTTGTTCCACGTATATAACTTCCAGTAGCACGGATGTTATGCACAGA 8673499 Query 78278 TATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGAT 78337 | || || ||||| || || || | ||| || || | |||||| || || Sbjct 8673498 GACACCAATCCCTCCAGCTGATTTGCTGATAACAGCACACTCCTTGAGTGTATCATATAT 8673439 Query 78338 ACCCTCTATACTGTCATCCATCATG-TTAAGAAGAAAACAGCT 78379 ||||| ||||| || || ||||| || ||| |||||||| Sbjct 8673438 GCCCTCAATACTATCCTCTTTCATGCATATCAAG-AAACAGCT 8673397 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694527816967040