Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sesamum_20indicum_20[refseq_20GCF_5F000512975.1_202014-01-06] 16,236 sequences; 275,059,498 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq15 185 1e-41 seq13 159 5e-34 seq9 116 5e-21 >seq15 Length=10047770 Score = 185 bits (204), Expect = 1e-41 Identities = 565/872 (65%), Gaps = 10/872 (1%) Strand=Plus/Plus Query 46338 TTTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATT 46397 ||| || || || || || | |||||| || |||||||| || |||| ||| ||| Sbjct 1769014 TTTCTGATACTCCCCCACTCTTTTCTCAAAGAAATTAGTCTTCCCTTGCAAACTTATTAA 1769073 Query 46398 TTCCATAAAATCAAACGGATTAGTAACATTATAAAtttttttAAATCCTAATTCTGAAAT 46457 ||||| |||||||||| || |||| ||| | || | | || ||| | | Sbjct 1769074 CTCCATCCAATCAAACGGGTTTTGGACATAATACAACTTCCCATACCCCAATGCATTCAG 1769133 Query 46458 CAGTCTATCTGCAACGAATTCTATATACGTTTTCATCATTTCACAATTCATTCCTATGAG 46517 || |||||| || || || | || ||| |||||| ||| | |||||| || | | Sbjct 1769134 CAATCTATCAGCCACAAACTTAATGTACTGACTCATCAATTCTCCATTCATCCCCACCAA 1769193 Query 46518 TTTGACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGACAGCATCCGATATTAT 46577 | || || || || | |||||| |||||| || || |||| | ||| Sbjct 1769194 CGCGCAAGGCAGCGCATCGCACACAAACTCCCTTTCAATGTCCACCGCGTCCGCCACTAT 1769253 Query 46578 CGATGTTACTGTTTCCTC-----ACTTGGTGGATGCATCAAATGTTTAAACATTAAACAT 46632 || | ||| | ||||| |||| | | || |||| | || || | || Sbjct 1769254 CGCCTTCACTTTCTCCTCGCTCAACTTCATT--TTCAACAAACTATAAAGCA---AGCAC 1769308 Query 46633 GCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCA 46692 |||||||| || || | || ||||| | ||||||||||| || || || | || Sbjct 1769309 GCAAAATCGCAGTGCAAACCCTCATCCCGTGAGATTAATTCGTTGGAGAAAGTTAAACCC 1769368 Query 46693 GGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATG 46752 ||||| | |||||||| || ||||||||||| || ||| ||| || || |||||| Sbjct 1769369 GGCATCAAACCACGCTTCTTCAGCCAAAATATTGCACAGAAGCTTCCCGAGAAAAATATG 1769428 Query 46753 CCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCATTATGAATCCAC 46812 ||||| ||| || ||| ||| | || || | || | || || ||||| Sbjct 1769429 CCTTCCACACAAGCAAATCCGATTAATCGTTCGGCAAAAGTTTCAGAGCCATCGATCCAG 1769488 Query 46813 CTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGA 46872 | | |||||| | |||||| |||| ||||| || | || || || || ||| || Sbjct 1769489 CGTAAAGCCCATTTAGCCTTCTTCTCCACACATGGGACAGTCTCGATTGCGCGAAAAAGC 1769548 Query 46873 AAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAA 46932 | ||| || || | ||| || | ||| | || | |||||||||||||| || ||| Sbjct 1769549 ATGTTCTTCTCGGCCGAATCCTTTATATAGGATTCAAGCAAAAGACTATACATCTCGGAA 1769608 Query 46933 TGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACC 46992 || ||||| ||||| || |||||||| || || || | || || | | ||| || Sbjct 1769609 TGGATGTTCTCAATGGCAATCTGAAACCCATAGAAGGCACGAGCCTCGGAGACCTGAACT 1769668 Query 46993 TCTGTACAAAATCGTTCAGACAAATTCTCATTCACTATTCCATCACTAGCAGCAAAAAAT 47052 || | || ||| ||| | ||||| || || |||||| || || || || Sbjct 1769669 TCCTTCATGAAGCGTCCAGCAAGGTTCTCCAAAACAATGCCATCAGAGGCGGCGAAGAAG 1769728 Query 47053 GCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCAGTTTATTCCAGTCATTGATA 47112 || | || ||||| || |||| || || || | ||| || || | ||||| || Sbjct 1769729 GCGAGAACGTGTTTGATGAAATGCTTCTCGTCAGAAGTGAGGTTTTCCCAGTGGCGGAGG 1769788 Query 47113 TCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATA 47172 |||| || | ||| ||||| || || |||||||| ||||| || ||||| || ||||| Sbjct 1769789 TCTTGGGACAAATCCACTTCCTCCGCAGTCCAGAAGGACGCTTCGGCTTTCTTGTACATT 1769848 Query 47173 TTCCATATATCACGATATTGGATCGGAAAAAT 47204 | ||| || | | || ||||| || || || Sbjct 1769849 TCCCAGATTTGTGGGTACTGGATGGGGAACAT 1769880 >seq13 Length=5050363 Score = 159 bits (176), Expect = 5e-34 Identities = 547/846 (65%), Gaps = 14/846 (2%) Strand=Plus/Minus Query 46339 TTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTT 46398 || || ||||| || || | ||||| || || || ||||| |||| ||| || | Sbjct 3176510 TTCTGATATTCCCCAACCCTCTTCTCAAAGAAGTTTGTTTTCCCTTGCAAACTAATCAAT 3176451 Query 46399 TCCATAAAATCAAACGGATTAGTAACATTATAAAtttttttAAATCCTAATTCTGAAATC 46458 ||||| ||||||| ||||| |||| || | ||| | | || || | | | Sbjct 3176450 TCCATCCAATCAAATGGATTCTGCACATGGTACAACTTTCCATAGCCCAAAGCATTCAAC 3176391 Query 46459 AGTCTATCTGCAACGAATTCTATATACGTTTTCATCATTTCACAATTCATTCCTATGAGT 46518 |||||||| || || ||||| || ||| |||||| || | |||||| || | || Sbjct 3176390 AGTCTATCAGCCACAAATTCAATGTACTGGCTCATCAAATCTCCATTCATCCCCACCAGC 3176331 Query 46519 TTGACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGACAGCATCCGATATTATC 46578 | || || || || | |||||| || ||| | || || |||| | ||| Sbjct 3176330 GCGCAAGGCAGCGCATCACACACAAACTCCCTCTCTATATTCACTGCGTCCGCCACTATT 3176271 Query 46579 GATGTTACTGTTTCCTCACTTGG-TGGATG--CATCAAATGTTTAAACATTAAACATGCA 46635 | | ||| | |||||||| | | || || |||| | || || || ||| Sbjct 3176270 CCTTTCACTTTCTCCTCACTCAGCTTCATTTTCAACAAACTGTAAAGCAGG---CACGCA 3176214 Query 46636 AAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGC 46695 ||||||||||| | |||||||||| ||||||||| || || || || | || ||| Sbjct 3176213 AAATCACAATGCAAACCTTCATCTCGCGAAATTAATTCATTGGAGAAAGTCAAGCCCGGC 3176154 Query 46696 ATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCA-GAAAAGAATATGCC 46754 || | || |||||||| | ||||||||| || || ||| ||| || || ||||| || Sbjct 3176153 ATCATCCCGCGCTTTTTCAACCAAAATATGGC-GCAGAAGCTCCCCGAGAAAAATATCCC 3176095 Query 46755 TTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCATT---ATGAATCCA 46811 || ||| || || ||||| | | ||| | | || ||| || |||||| Sbjct 3176094 CTCAACACAAGCAAAGGCGACTAACCGCTCAGCAAA---GGATTCAGAGCCATCAATCCA 3176038 Query 46812 CCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAG 46871 | ||||| | ||||| || | || ||||| | || || || || ||||| Sbjct 3176037 GCGCATGGCCCACTTGGCCTTCTTTTCCACGCAAGGAACGGTCTCAATTGCGCGGAAGAG 3175978 Query 46872 AAAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGA 46931 |||||| || | ||||| | || | || | | |||||| ||||| || || Sbjct 3175977 GTGGTTTTTCTCGGCCGAGTCTTTGATGTAAGACTCAAGCAGAAGACTGTACATCTCGGA 3175918 Query 46932 ATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTAC 46991 ||||||||| ||||| || || || || ||||| || | || || | ||||| || Sbjct 3175917 ATGAATGTTCTCAATGGCAATTTGGAAGCCGTAGAAGGCACGGGCCTCGGAGATCTGGAC 3175858 Query 46992 CTCTGTACAAAATCGTTCAGACAAATTCTCATTCACTATTCCATCACTAGCAGCAAAAAA 47051 |||| | || ||| ||| | ||| || || || ||||| |||||||| || Sbjct 3175857 CTCTTTCATGAAGCGTCCAGCGAGATTTTCCAAAACGATACCATCGGAGGCAGCAAAGAA 3175798 Query 47052 TGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCAGTTTATTCCAGTCATTGAT 47111 || | || ||||| | |||| || || |||| || || | ||| | || Sbjct 3175797 GGCGAGGACGTGTTTGACGAAATGCTTCTCGTCGGAGGTGAGGGCTTCCCAATGGCGGAG 3175738 Query 47112 ATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACAT 47171 || | |||| ||| ||||| || || |||||||| || || ||||||||||| ||||| Sbjct 3175737 GTCCTGAGATAAATCAACTTCCTCGGCGGTCCAGAAGGAAGCTTCTGCTTTTTTGTACAT 3175678 Query 47172 ATTCCA 47177 | ||| Sbjct 3175677 CTCCCA 3175672 >seq9 Length=12411895 Score = 116 bits (128), Expect = 5e-21 Identities = 161/223 (72%), Gaps = 2/223 (1%) Strand=Plus/Minus Query 76753 ACCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCC 76812 ||| || ||||| | ||||| || |||| ||| | |||| | |||||||| |||||| Sbjct 8673618 ACCCCCTTGATCCACATATCGAGCTGTGTCATTGAACACTCGAAGCATTGGAACAATGCC 8673559 Query 76813 GTTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGA 76872 || || || |||||||||||| |||||||||||| ||||| || ||| | ||| Sbjct 8673558 ATTGGAAGTTCCATTTGTTCCACGTATATAACTTCCAGTAGCACGGATGTTATGCACAGA 8673499 Query 76873 TAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGAT 76932 | || || ||||| || ||| ||| | |||||| || | ||| ||||| || Sbjct 8673498 GACACCAATCCCTCCAGCTGATTTGCTGATAACAGCACACTCCTTGAGTGTATCATATAT 8673439 Query 76933 GCCCTCTATACTATCATCCATCATG-TTAAGAAGAAAACAGCT 76974 |||||| |||||||| || ||||| || ||| |||||||| Sbjct 8673438 GCCCTCAATACTATCCTCTTTCATGCATATCAAG-AAACAGCT 8673397 Score = 113 bits (124), Expect = 6e-20 Identities = 118/155 (76%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 76492 CTCTCTTTCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACC 76551 |||||| ||||| | || ||||| ||||||||| || |||||| |||| | || || Sbjct 8674110 CTCTCTCTCATACTTAGTGTATAAAGCTTCAAATTCTTCACCCCAACAATCAGCTAACCC 8674051 Query 76552 AGGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAAA 76611 |||| ||||||||||| | ||||||||| | |||| | ||| | || |||||| Sbjct 8674050 AGGAGCCTCATTCGGACAAAACAATGACCATTGTCCATTAGATTGAACTCTTTGCATAAA 8673991 Query 76612 GAGATCAGGTATCCATAGAGCAATAAATAGATCTC 76646 |||||||||| ||| |||||| ||||||||||| Sbjct 8673990 TAGATCAGGTACCCAAAGAGCATAAAATAGATCTC 8673956 Score = 102 bits (112), Expect = 1e-16 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 76994 GTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTG 77053 ||||| ||||| || | |||||||||||||||||||||||| | ||| | |||| Sbjct 8673292 GTTCCAGCATTGAAAAGGGTAGGAGATGCATGAGTGAACCATCGCTGAGACAACAGATGA 8673233 Query 77054 TATGTTTCAATAACTGCTTCTATATC-CCATTGATGAATTCCTACAGCGACACGCATCAA 77112 ||||||| ||||||| || ||||| | ||| || || || || || || | |||||| Sbjct 8673232 TATGTTTTTATAACTGAATCAATATCATCCTTG-TGGATACCAACGGCAACCCTCATCAA 8673174 Query 77113 CATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAA 77172 ||| || ||||| | || ||| ||| | | || |||| ||| || |||| | Sbjct 8673173 CATGTGTTGAGGCCTCTCAACAACCTTGCCTTGGACCTTTAACAGGTAAGACCTTTCAAG 8673114 Query 77173 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 77220 ||||| || ||||| || | || ||||||||| || || || || Sbjct 8673113 GGTTTTGAATCCAAAGTAATCATAGTCAAAGTCTCTGTCATATATGAT 8673066 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712789709963520