Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Silene_20latifolia_20subsp._20alba_20[genbank_20GCA_5F001412135.1_20
2015-10-23] 307,720 sequences; 665,278,925 total letters
Query= NC_001132.2
Length=161773
Score E
Sequences producing significant alignments: (Bits) Value
seq33024 123 3e-23
seq100015 95.1 1e-14
>seq33024
Length=3557
Score = 123 bits (136), Expect = 3e-23
Identities = 549/854 (64%), Gaps = 24/854 (3%)
Strand=Plus/Plus
Query 16676 TGGTAATCGCTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCTAGAGATATATTCTCC 16735
|| || || | ||| || ||||||||||| ||||| || |||| | ||| || |||
Sbjct 1032 TGATACTCCCCAACCCGCTTTTCGAAAAAATTAGTCTTTCCCTGCAAAGAAATCAATTCC 1091
Query 16736 ATGAAATCAAAAGGATTAGTAGCT--GAAAATATTTTAGAGTACCCCAGTTCGGCGATTA 16793
|| ||||||| ||||| | | || | ||| ||| | | ||| | | | | |
Sbjct 1092 ATCCAATCAAACGGATTCGAAACTCCGTAAAC-TTTCCCAAT-CCCTAAAGCACCCAACA 1149
Query 16794 ATCTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCATTCCTATAAGAC 16853
| ||||| || |||||||| ||||| || | |||||| || | ||||| || | | ||
Sbjct 1150 ACCTATCAGCAACAAATTCAATATACTGACTCATTAACTCTCCATTCATCCCAACCA-AC 1208
Query 16854 GTACCGGAAGAGCTTC-CGTCAAAAA-----TCGTTGCTCTATAACAACCGCTTCCTTAA 16907
| || ||| || | ||||| ||| || | ||| || | ||||| || ||
Sbjct 1209 G---CGCAAG-GCAGCGCGTCACAAACAAACTCCCT-CTCGATTTCCACCGCCTCTGAAA 1263
Query 16908 TAATACTAGCAACTCGTTCCTCGGACGGTGTAT-GTTTAAGATGTTTAAACATCAGACAT 16966
||| | || || ||||| || ||| ||| || | | ||| || |||
Sbjct 1264 CAATCCCCTTCACGCGCTCCTCACTCGCCTTATTGTTCAACA-GCGAGTACAACAAACAG 1322
Query 16967 GCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCG 17026
|||||||| || ||||| |||||||||| || | ||||| || || || | |||
Sbjct 1323 GCGAAATCACAGTGTAACCCCTCGTCTCGAGAAATCAACTCGTTCGAGAAGGTAAGCCCC 1382
Query 17027 GGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATA 17086
||||| |||||||||||| | ||||||||||||| ||| ||||| ||||||||
Sbjct 1383 GGCATTAATCCTCGTTTCTTGAGCCAAAATATCGCGCAGAAGCTTCCAGAGAAGAATATC 1442
Query 17087 CCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACGAATC 17146
|| || || | || || |||| | ||| || ||| | || | | || || |||
Sbjct 1443 CCTTCAACACAAGCGAAAGCGACAATTCGCTCAGCGAAACTCTCCCCGCCGT--CG-ATC 1499
Query 17147 CATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGCCTTAAAT 17206
|| | |||| || || || |||| | || || || | || |||
Sbjct 1500 CAGCGCAAGGCCCAATCAGCCTTGCGCTTGACAGCGGGGATAGTCTCAACAGCACGGAAT 1559
Query 17207 AATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGTACATTTCG 17266
|| | |||||||| || | || || || || | | || | ||||||||||
Sbjct 1560 AAACCCGATTTTTCCTCCGAATCCTTAATGTAAGTCTCCAATAATAAGGAGTACATTTCG 1619
Query 17267 GAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATTTGA 17326
|| || || || || || || || ||||| |||||||| || ||||| | | ||||
Sbjct 1620 GAATGGATATTTTCGATAGCGATTTGAAACCCGTAAAATGCTCTCGCTTCAGGAAGTTGA 1679
Query 17327 ACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGCGAAA 17386
|||||| ||| || || ||||| || ||| || ||||| ||||||||
Sbjct 1680 ACTTCCTTCATGAAACGACAAGCGAGATTCTCCAGCACAATACCGTCAGATGCGGCGAAG 1739
Query 17387 AACGCCAATATATGCTTAATGAAATATTTTTCGTCCGGTGTAAGA---ACGCGCCAGTCC 17443
|| || | | || | ||||||| ||| || | || ||| || |||||
Sbjct 1740 AAGGCGAGCACGTGAGTGATGAAATGACGTTCATCGGACGTCAGAGTGTCGGACCAGTGA 1799
Query 17444 TTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCCACTGCCTTTTTA 17503
|||||| |||| ||| |||||||| | ||||| ||| ||| | || |||||
Sbjct 1800 CGTAAATCGGAAGATAAATCGACTTCTTCAGCAGTCCAGAAAGAAGCTTCGGCTTTTTTG 1859
Query 17504 TACATATTCCAAAT 17517
||||| | ||| ||
Sbjct 1860 TACATTTCCCAGAT 1873
>seq100015
Length=1511
Score = 95.1 bits (104), Expect = 1e-14
Identities = 121/167 (72%), Gaps = 0/167 (0%)
Strand=Plus/Plus
Query 16956 ACATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAA 17015
||| || ||| ||||| || || |||||||||||||||| || | ||||| || |
Sbjct 1220 ACAACAAACAGGCGAAGTCACAGTGTAATCCCTCGTCTCGAGAAATCAACTCGTTCGAGA 1279
Query 17016 ATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAG 17075
| || | ||| ||||| ||||||||||| | ||||||||||||| ||| ||||
Sbjct 1280 AGGTAAGCCCTGGCATTAACCCTCGTTTCTTGAGCCAAAATATCGCGCAGAAGCTTCCAG 1339
Query 17076 AAAAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCG 17122
| |||||||| || || || | || || |||| | ||| || |||
Sbjct 1340 AGAAGAATATCCCTTCAACACAAGCGAAAGCGACAATTCGCTCAGCG 1386
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 515554860849600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |