Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Silene_20latifolia_20subsp._20alba_20[genbank_20GCA_5F001412135.1_20 2015-10-23] 307,720 sequences; 665,278,925 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq33024 123 3e-23 seq100015 95.1 1e-14 >seq33024 Length=3557 Score = 123 bits (136), Expect = 3e-23 Identities = 549/854 (64%), Gaps = 24/854 (3%) Strand=Plus/Plus Query 16676 TGGTAATCGCTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCTAGAGATATATTCTCC 16735 || || || | ||| || ||||||||||| ||||| || |||| | ||| || ||| Sbjct 1032 TGATACTCCCCAACCCGCTTTTCGAAAAAATTAGTCTTTCCCTGCAAAGAAATCAATTCC 1091 Query 16736 ATGAAATCAAAAGGATTAGTAGCT--GAAAATATTTTAGAGTACCCCAGTTCGGCGATTA 16793 || ||||||| ||||| | | || | ||| ||| | | ||| | | | | | Sbjct 1092 ATCCAATCAAACGGATTCGAAACTCCGTAAAC-TTTCCCAAT-CCCTAAAGCACCCAACA 1149 Query 16794 ATCTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCATTCCTATAAGAC 16853 | ||||| || |||||||| ||||| || | |||||| || | ||||| || | | || Sbjct 1150 ACCTATCAGCAACAAATTCAATATACTGACTCATTAACTCTCCATTCATCCCAACCA-AC 1208 Query 16854 GTACCGGAAGAGCTTC-CGTCAAAAA-----TCGTTGCTCTATAACAACCGCTTCCTTAA 16907 | || ||| || | ||||| ||| || | ||| || | ||||| || || Sbjct 1209 G---CGCAAG-GCAGCGCGTCACAAACAAACTCCCT-CTCGATTTCCACCGCCTCTGAAA 1263 Query 16908 TAATACTAGCAACTCGTTCCTCGGACGGTGTAT-GTTTAAGATGTTTAAACATCAGACAT 16966 ||| | || || ||||| || ||| ||| || | | ||| || ||| Sbjct 1264 CAATCCCCTTCACGCGCTCCTCACTCGCCTTATTGTTCAACA-GCGAGTACAACAAACAG 1322 Query 16967 GCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCG 17026 |||||||| || ||||| |||||||||| || | ||||| || || || | ||| Sbjct 1323 GCGAAATCACAGTGTAACCCCTCGTCTCGAGAAATCAACTCGTTCGAGAAGGTAAGCCCC 1382 Query 17027 GGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATA 17086 ||||| |||||||||||| | ||||||||||||| ||| ||||| |||||||| Sbjct 1383 GGCATTAATCCTCGTTTCTTGAGCCAAAATATCGCGCAGAAGCTTCCAGAGAAGAATATC 1442 Query 17087 CCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACGAATC 17146 || || || | || || |||| | ||| || ||| | || | | || || ||| Sbjct 1443 CCTTCAACACAAGCGAAAGCGACAATTCGCTCAGCGAAACTCTCCCCGCCGT--CG-ATC 1499 Query 17147 CATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGCCTTAAAT 17206 || | |||| || || || |||| | || || || | || ||| Sbjct 1500 CAGCGCAAGGCCCAATCAGCCTTGCGCTTGACAGCGGGGATAGTCTCAACAGCACGGAAT 1559 Query 17207 AATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGTACATTTCG 17266 || | |||||||| || | || || || || | | || | |||||||||| Sbjct 1560 AAACCCGATTTTTCCTCCGAATCCTTAATGTAAGTCTCCAATAATAAGGAGTACATTTCG 1619 Query 17267 GAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATTTGA 17326 || || || || || || || || ||||| |||||||| || ||||| | | |||| Sbjct 1620 GAATGGATATTTTCGATAGCGATTTGAAACCCGTAAAATGCTCTCGCTTCAGGAAGTTGA 1679 Query 17327 ACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGCGAAA 17386 |||||| ||| || || ||||| || ||| || ||||| |||||||| Sbjct 1680 ACTTCCTTCATGAAACGACAAGCGAGATTCTCCAGCACAATACCGTCAGATGCGGCGAAG 1739 Query 17387 AACGCCAATATATGCTTAATGAAATATTTTTCGTCCGGTGTAAGA---ACGCGCCAGTCC 17443 || || | | || | ||||||| ||| || | || ||| || ||||| Sbjct 1740 AAGGCGAGCACGTGAGTGATGAAATGACGTTCATCGGACGTCAGAGTGTCGGACCAGTGA 1799 Query 17444 TTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCCACTGCCTTTTTA 17503 |||||| |||| ||| |||||||| | ||||| ||| ||| | || ||||| Sbjct 1800 CGTAAATCGGAAGATAAATCGACTTCTTCAGCAGTCCAGAAAGAAGCTTCGGCTTTTTTG 1859 Query 17504 TACATATTCCAAAT 17517 ||||| | ||| || Sbjct 1860 TACATTTCCCAGAT 1873 >seq100015 Length=1511 Score = 95.1 bits (104), Expect = 1e-14 Identities = 121/167 (72%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 16956 ACATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAA 17015 ||| || ||| ||||| || || |||||||||||||||| || | ||||| || | Sbjct 1220 ACAACAAACAGGCGAAGTCACAGTGTAATCCCTCGTCTCGAGAAATCAACTCGTTCGAGA 1279 Query 17016 ATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAG 17075 | || | ||| ||||| ||||||||||| | ||||||||||||| ||| |||| Sbjct 1280 AGGTAAGCCCTGGCATTAACCCTCGTTTCTTGAGCCAAAATATCGCGCAGAAGCTTCCAG 1339 Query 17076 AAAAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCG 17122 | |||||||| || || || | || || |||| | ||| || ||| Sbjct 1340 AGAAGAATATCCCTTCAACACAAGCGAAAGCGACAATTCGCTCAGCG 1386 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515554860849600