Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Silene_20latifolia_20subsp._20alba_20[genbank_20GCA_5F001412135.1_20 2015-10-23] 307,720 sequences; 665,278,925 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq100015 95.1 1e-14 seq33024 86.0 6e-12 >seq100015 Length=1511 Score = 95.1 bits (104), Expect = 1e-14 Identities = 119/161 (74%), Gaps = 2/161 (1%) Strand=Plus/Plus Query 16201 ACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAA 16260 ||| |||||||| || |||| ||| ||||||| || | ||||| || || || | Sbjct 1227 ACAGGCGAAGTCACAGTGTAATCCCTCGTCTCGAGAAATCAACTCGTTCGAGAAGGTAAG 1286 Query 16261 CCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCA-AATGACCCCGAAAAGA 16319 |||||||||| ||||||||||| | ||| |||||||| ||| || || || |||| Sbjct 1287 CCCTGGCATTAACCCTCGTTTCTTGAGCCAAAATATCGC-GCAGAAGCTTCCAGAGAAGA 1345 Query 16320 ATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCG 16360 |||| || |||||| | || ||||||| | ||| || ||| Sbjct 1346 ATATCCCTTCAACACAAGCGAAAGCGACAATTCGCTCAGCG 1386 >seq33024 Length=3557 Score = 86.0 bits (94), Expect = 6e-12 Identities = 117/161 (73%), Gaps = 2/161 (1%) Strand=Plus/Plus Query 16201 ACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAA 16260 ||| ||||| || || |||| || ||||||| || | ||||| || || || | Sbjct 1319 ACAGGCGAAATCACAGTGTAACCCCTCGTCTCGAGAAATCAACTCGTTCGAGAAGGTAAG 1378 Query 16261 CCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCA-AATGACCCCGAAAAGA 16319 ||| |||||| |||||||||||| | ||| |||||||| ||| || || || |||| Sbjct 1379 CCCCGGCATTAATCCTCGTTTCTTGAGCCAAAATATCGC-GCAGAAGCTTCCAGAGAAGA 1437 Query 16320 ATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCG 16360 |||| || |||||| | || ||||||| | ||| || ||| Sbjct 1438 ATATCCCTTCAACACAAGCGAAAGCGACAATTCGCTCAGCG 1478 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 509447244510400